Wall clock time and date at job start Tue Mar 31 2020 19:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58428 * 2 1 4 4 C 1.53189 * 109.70281 * 120.35791 * 2 1 3 5 5 C 1.53037 * 109.31141 * 65.22651 * 4 2 1 6 6 H 1.09004 * 109.44765 * 301.34750 * 5 4 2 7 7 N 1.46496 * 109.46185 * 181.38563 * 5 4 2 8 8 C 1.34773 * 120.00543 * 154.93005 * 7 5 4 9 9 O 1.21691 * 119.99896 * 0.27241 * 8 7 5 10 10 C 1.46680 * 120.00282 * 180.02562 * 8 7 5 11 11 C 1.35662 * 126.13169 * 0.02562 * 10 8 7 12 12 N 1.30941 * 114.19003 * 180.02562 * 11 10 8 13 13 C 1.29423 * 117.36988 * 0.02562 * 12 11 10 14 14 C 1.50699 * 124.80981 * 180.02562 * 13 12 11 15 15 C 1.53006 * 117.49595 * 8.60199 * 14 13 12 16 16 C 1.53006 * 117.50026 * 299.97916 * 14 13 12 17 17 S 1.70961 * 110.38754 * 359.72487 * 13 12 11 18 18 C 1.53039 * 109.54255 * 61.36155 * 5 4 2 19 19 C 1.53193 * 109.31099 * 298.63802 * 18 5 4 20 20 N 1.46921 * 108.77881 * 54.63427 * 19 18 5 21 21 C 1.36932 * 120.63333 * 126.40959 * 20 19 18 22 22 H 1.08000 * 120.00239 * 207.67136 * 21 20 19 23 23 C 1.38813 * 119.99865 * 27.68174 * 21 20 19 24 24 N 1.31621 * 120.00112 * 17.35144 * 23 21 20 25 25 Si 1.86801 * 119.99869 * 197.35346 * 23 21 20 26 26 H 1.48496 * 109.47151 * 89.99851 * 25 23 21 27 27 H 1.48505 * 109.46925 * 209.99743 * 25 23 21 28 28 H 1.48500 * 109.47268 * 329.99451 * 25 23 21 29 29 H 1.09000 * 109.47201 * 180.28002 * 1 2 3 30 30 H 1.08996 * 109.46958 * 300.28343 * 1 2 3 31 31 H 1.09007 * 109.47188 * 60.27884 * 1 2 3 32 32 H 1.08994 * 109.50126 * 305.27070 * 4 2 1 33 33 H 1.09007 * 109.49395 * 185.17317 * 4 2 1 34 34 H 0.97009 * 119.99942 * 334.92635 * 7 5 4 35 35 H 1.07998 * 122.90460 * 359.97438 * 11 10 8 36 36 H 1.08997 * 115.55334 * 154.30468 * 14 13 12 37 37 H 1.08996 * 117.49975 * 359.97438 * 15 14 13 38 38 H 1.08993 * 117.49878 * 145.02106 * 15 14 13 39 39 H 1.08995 * 117.50071 * 214.97323 * 16 14 13 40 40 H 1.09001 * 117.49652 * 359.97438 * 16 14 13 41 41 H 1.09003 * 109.49737 * 58.58554 * 18 5 4 42 42 H 1.08998 * 109.49799 * 178.68626 * 18 5 4 43 43 H 1.08999 * 109.58888 * 174.42351 * 19 18 5 44 44 H 1.08999 * 109.58801 * 294.84263 * 19 18 5 45 45 H 0.96998 * 120.00152 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 1.2445 5 6 1.6473 -2.2044 1.1689 6 1 0.5624 -2.2837 1.0992 7 7 2.1110 -2.8977 2.3732 8 6 1.4857 -4.0166 2.7896 9 8 0.5389 -4.4538 2.1624 10 6 1.9496 -4.7105 3.9958 11 6 2.9894 -4.3375 4.7832 12 7 3.2004 -5.1296 5.8043 13 6 2.4140 -6.1486 5.9393 14 6 2.5046 -7.1641 7.0490 15 6 3.4703 -6.8699 8.1987 16 6 3.8068 -7.9573 7.1762 17 16 1.2525 -6.1748 4.6850 18 6 2.2857 -2.8448 -0.0658 19 6 1.7719 -2.1398 -1.3251 20 7 2.0226 -0.6979 -1.1955 21 6 2.7019 -0.0174 -2.1704 22 1 3.2655 0.8685 -1.9177 23 6 2.6660 -0.4662 -3.4835 24 7 1.7346 -1.3149 -3.8637 25 14 3.9396 0.1344 -4.7109 26 1 5.1122 -0.7766 -4.6932 27 1 3.3461 0.1508 -6.0720 28 1 4.3730 1.5063 -4.3433 29 1 -0.3633 -1.0276 0.0050 30 1 -0.3633 0.5182 0.8874 31 1 -0.3634 0.5095 -0.8925 32 1 1.6106 -0.2793 2.1366 33 1 3.1326 -0.6476 1.2891 34 1 2.8682 -2.5515 2.8710 35 1 3.5917 -3.4633 4.5845 36 1 1.5754 -7.6799 7.2913 37 1 4.0404 -5.9421 8.1522 38 1 3.1765 -7.1920 9.1976 39 1 3.7343 -8.9947 7.5026 40 1 4.5978 -7.7449 6.4570 41 1 3.3696 -2.7436 -0.0088 42 1 2.0200 -3.9011 -0.1062 43 1 2.2969 -2.5248 -2.1993 44 1 0.7017 -2.3165 -1.4319 45 1 1.7093 -1.6282 -4.7813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947949559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:02 Heat of formation + Delta-G solvation = 52.719673 kcal Electronic energy + Delta-G solvation = -26207.052901 eV Core-core repulsion = 22545.638134 eV Total energy + Delta-G solvation = -3661.414766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.45037 -39.50544 -37.77274 -37.17960 -34.55559 -32.62191 -31.35764 -30.40545 -29.24675 -27.09154 -26.62405 -24.34444 -23.28629 -22.79600 -22.32820 -21.88374 -20.96300 -19.56010 -18.62014 -18.22957 -17.27958 -16.71089 -16.19367 -15.67761 -15.28158 -14.90475 -14.73805 -14.45189 -14.22497 -13.93802 -13.76309 -13.71279 -13.08846 -12.70768 -12.61132 -12.50242 -12.23311 -11.95152 -11.76628 -11.42851 -11.28466 -11.09342 -11.06989 -10.94685 -10.82094 -10.65454 -10.38058 -10.32011 -10.18789 -10.00210 -9.74175 -9.72262 -9.66923 -9.38793 -9.09415 -8.75945 -8.42140 -6.70437 -5.78956 -3.21557 0.00503 0.88178 1.44247 2.19629 3.15766 3.30663 3.38190 3.39637 3.44691 3.45759 3.67348 4.30390 4.37887 4.48168 4.52215 4.69835 4.88021 4.98024 5.21883 5.26248 5.34484 5.36657 5.39373 5.55424 5.57179 5.71787 5.75906 5.78737 5.99277 6.04717 6.23597 6.27133 6.38844 6.44006 6.56698 6.63008 6.77471 6.83715 6.93079 7.14553 7.32520 7.37357 7.55760 7.69179 7.79741 8.22798 8.44847 9.20654 9.84052 10.40563 11.29277 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024628 B = 0.002295 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.630644 B =12197.950256 C =12414.393366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.151 3.849 6 H 0.088 0.912 7 N -0.710 5.710 8 C 0.589 3.411 9 O -0.534 6.534 10 C -0.291 4.291 11 C 0.091 3.909 12 N -0.479 5.479 13 C 0.065 3.935 14 C -0.102 4.102 15 C -0.148 4.148 16 C -0.154 4.154 17 S 0.236 5.764 18 C -0.147 4.147 19 C 0.174 3.826 20 N -0.585 5.585 21 C -0.253 4.253 22 H 0.066 0.934 23 C 0.003 3.997 24 N -0.900 5.900 25 Si 0.902 3.098 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.395 0.605 35 H 0.181 0.819 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.090 0.910 44 H 0.022 0.978 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.043 -10.404 23.256 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.048 3.952 6 H 0.106 0.894 7 N -0.360 5.360 8 C 0.373 3.627 9 O -0.412 6.412 10 C -0.416 4.416 11 C -0.067 4.067 12 N -0.193 5.193 13 C -0.208 4.208 14 C -0.124 4.124 15 C -0.187 4.187 16 C -0.193 4.193 17 S 0.496 5.504 18 C -0.188 4.188 19 C 0.047 3.953 20 N -0.306 5.306 21 C -0.382 4.382 22 H 0.084 0.916 23 C -0.196 4.196 24 N -0.544 5.544 25 Si 0.732 3.268 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.229 0.771 35 H 0.198 0.802 36 H 0.147 0.853 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.108 0.892 44 H 0.040 0.960 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.849 -11.374 22.701 25.405 hybrid contribution 1.516 1.231 -0.695 2.073 sum 2.365 -10.143 22.006 24.346 Atomic orbital electron populations 1.22308 0.98657 1.01130 1.00137 1.20437 0.91810 0.95138 0.86438 0.91559 1.22313 1.01281 0.93909 0.99748 1.21194 0.99978 0.91337 0.82697 0.89398 1.46125 1.34292 1.26294 1.29285 1.16711 0.82846 0.80777 0.82335 1.90864 1.27982 1.65659 1.56662 1.25935 1.05741 1.04360 1.05536 1.22115 0.95599 0.99626 0.89397 1.66000 1.27614 1.04126 1.21606 1.26491 0.96372 0.97521 1.00437 1.20556 0.96906 0.99060 0.95862 1.23025 1.00996 1.01170 0.93491 1.23071 0.96396 0.97180 1.02659 1.84073 1.29358 1.19998 1.16966 1.22588 1.00229 0.99226 0.96732 1.20752 0.97786 0.82884 0.93844 1.44174 1.63897 1.03408 1.19151 1.19168 1.22201 1.10156 0.86720 0.91609 1.25053 0.97707 1.00011 0.96815 1.70035 1.31708 1.35679 1.16964 0.86300 0.81336 0.78469 0.80700 1.21498 1.21814 1.20462 0.93205 0.94473 0.92539 0.92476 0.91758 0.77122 0.80221 0.85285 0.87264 0.87953 0.87686 0.88166 0.92579 0.92860 0.89204 0.95996 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.03 37.16 0.34 -2.76 16 2 C 0.17 3.38 3.28 -67.60 -0.22 3.16 16 3 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 4 C -0.13 -2.15 5.03 -26.61 -0.13 -2.29 16 5 C 0.15 2.58 2.21 -67.89 -0.15 2.43 16 6 H 0.09 1.69 5.94 -51.93 -0.31 1.38 16 7 N -0.71 -10.03 5.06 -55.08 -0.28 -10.30 16 8 C 0.59 9.13 7.75 -12.85 -0.10 9.03 16 9 O -0.53 -10.32 16.63 5.20 0.09 -10.23 16 10 C -0.29 -3.69 6.48 -37.10 -0.24 -3.93 16 11 C 0.09 0.99 10.93 -18.85 -0.21 0.78 16 12 N -0.48 -5.30 9.98 -11.50 -0.11 -5.42 16 13 C 0.07 0.65 6.96 -13.29 -0.09 0.55 16 14 C -0.10 -0.72 6.28 -91.77 -0.58 -1.29 16 15 C -0.15 -0.90 10.12 -26.72 -0.27 -1.17 16 16 C -0.15 -0.92 10.23 -26.72 -0.27 -1.19 16 17 S 0.24 2.56 23.01 -107.50 -2.47 0.09 16 18 C -0.15 -2.91 5.65 -26.61 -0.15 -3.07 16 19 C 0.17 4.15 4.90 -3.71 -0.02 4.13 16 20 N -0.58 -14.10 2.70 -164.78 -0.45 -14.54 16 21 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 22 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 23 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 24 N -0.90 -25.95 11.19 55.49 0.62 -25.33 16 25 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H 0.05 0.98 5.74 -51.93 -0.30 0.69 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.39 4.32 7.31 -40.82 -0.30 4.03 16 35 H 0.18 1.47 7.15 -52.49 -0.38 1.10 16 36 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.11 0.82 7.84 -51.93 -0.41 0.41 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 44 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -31.86 375.90 -10.88 -42.74 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.58 Total: 3.35 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.33 Total: -2.51 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.22 Total: -55.59 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.47 Total: 0.09 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.86 -10.88 -42.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947949559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.455 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds