Wall clock time and date at job start Tue Mar 31 2020 19:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58428 * 2 1 4 4 C 1.53189 * 109.70281 * 120.35791 * 2 1 3 5 5 C 1.53037 * 109.31141 * 65.22651 * 4 2 1 6 6 H 1.09004 * 109.44765 * 301.34750 * 5 4 2 7 7 N 1.46496 * 109.46185 * 181.38563 * 5 4 2 8 8 C 1.34773 * 120.00543 * 154.93005 * 7 5 4 9 9 O 1.21691 * 119.99896 * 0.27241 * 8 7 5 10 10 C 1.46680 * 120.00282 * 180.02562 * 8 7 5 11 11 C 1.35662 * 126.13169 * 0.02562 * 10 8 7 12 12 N 1.30941 * 114.19003 * 180.02562 * 11 10 8 13 13 C 1.29423 * 117.36988 * 0.02562 * 12 11 10 14 14 C 1.50699 * 124.80981 * 180.02562 * 13 12 11 15 15 C 1.53006 * 117.49595 * 8.60199 * 14 13 12 16 16 C 1.53006 * 117.50026 * 299.97916 * 14 13 12 17 17 S 1.70961 * 110.38754 * 359.72487 * 13 12 11 18 18 C 1.53039 * 109.54255 * 61.36155 * 5 4 2 19 19 C 1.53193 * 109.31099 * 298.63802 * 18 5 4 20 20 N 1.46921 * 108.77881 * 54.63427 * 19 18 5 21 21 C 1.36932 * 120.63333 * 126.40959 * 20 19 18 22 22 H 1.08000 * 120.00239 * 207.67136 * 21 20 19 23 23 C 1.38813 * 119.99865 * 27.68174 * 21 20 19 24 24 N 1.31621 * 120.00112 * 17.35144 * 23 21 20 25 25 Si 1.86801 * 119.99869 * 197.35346 * 23 21 20 26 26 H 1.48496 * 109.47151 * 89.99851 * 25 23 21 27 27 H 1.48505 * 109.46925 * 209.99743 * 25 23 21 28 28 H 1.48500 * 109.47268 * 329.99451 * 25 23 21 29 29 H 1.09000 * 109.47201 * 180.28002 * 1 2 3 30 30 H 1.08996 * 109.46958 * 300.28343 * 1 2 3 31 31 H 1.09007 * 109.47188 * 60.27884 * 1 2 3 32 32 H 1.08994 * 109.50126 * 305.27070 * 4 2 1 33 33 H 1.09007 * 109.49395 * 185.17317 * 4 2 1 34 34 H 0.97009 * 119.99942 * 334.92635 * 7 5 4 35 35 H 1.07998 * 122.90460 * 359.97438 * 11 10 8 36 36 H 1.08997 * 115.55334 * 154.30468 * 14 13 12 37 37 H 1.08996 * 117.49975 * 359.97438 * 15 14 13 38 38 H 1.08993 * 117.49878 * 145.02106 * 15 14 13 39 39 H 1.08995 * 117.50071 * 214.97323 * 16 14 13 40 40 H 1.09001 * 117.49652 * 359.97438 * 16 14 13 41 41 H 1.09003 * 109.49737 * 58.58554 * 18 5 4 42 42 H 1.08998 * 109.49799 * 178.68626 * 18 5 4 43 43 H 1.08999 * 109.58888 * 174.42351 * 19 18 5 44 44 H 1.08999 * 109.58801 * 294.84263 * 19 18 5 45 45 H 0.96998 * 120.00152 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 1.2445 5 6 1.6473 -2.2044 1.1689 6 1 0.5624 -2.2837 1.0992 7 7 2.1110 -2.8977 2.3732 8 6 1.4857 -4.0166 2.7896 9 8 0.5389 -4.4538 2.1624 10 6 1.9496 -4.7105 3.9958 11 6 2.9894 -4.3375 4.7832 12 7 3.2004 -5.1296 5.8043 13 6 2.4140 -6.1486 5.9393 14 6 2.5046 -7.1641 7.0490 15 6 3.4703 -6.8699 8.1987 16 6 3.8068 -7.9573 7.1762 17 16 1.2525 -6.1748 4.6850 18 6 2.2857 -2.8448 -0.0658 19 6 1.7719 -2.1398 -1.3251 20 7 2.0226 -0.6979 -1.1955 21 6 2.7019 -0.0174 -2.1704 22 1 3.2655 0.8685 -1.9177 23 6 2.6660 -0.4662 -3.4835 24 7 1.7346 -1.3149 -3.8637 25 14 3.9396 0.1344 -4.7109 26 1 5.1122 -0.7766 -4.6932 27 1 3.3461 0.1508 -6.0720 28 1 4.3730 1.5063 -4.3433 29 1 -0.3633 -1.0276 0.0050 30 1 -0.3633 0.5182 0.8874 31 1 -0.3634 0.5095 -0.8925 32 1 1.6106 -0.2793 2.1366 33 1 3.1326 -0.6476 1.2891 34 1 2.8682 -2.5515 2.8710 35 1 3.5917 -3.4633 4.5845 36 1 1.5754 -7.6799 7.2913 37 1 4.0404 -5.9421 8.1522 38 1 3.1765 -7.1920 9.1976 39 1 3.7343 -8.9947 7.5026 40 1 4.5978 -7.7449 6.4570 41 1 3.3696 -2.7436 -0.0088 42 1 2.0200 -3.9011 -0.1062 43 1 2.2969 -2.5248 -2.1993 44 1 0.7017 -2.3165 -1.4319 45 1 1.7093 -1.6282 -4.7813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947949559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:01 Heat of formation + Delta-G solvation = 32.963784 kcal Electronic energy + Delta-G solvation = -26207.909580 eV Core-core repulsion = 22545.638134 eV Total energy + Delta-G solvation = -3662.271446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45473 -40.63033 -39.28404 -37.79229 -36.09179 -34.37626 -32.75643 -31.95344 -30.70435 -28.55976 -27.58071 -26.16805 -24.24541 -23.76328 -23.39907 -23.24602 -22.16699 -20.74566 -19.83690 -19.35550 -18.72604 -18.02141 -17.39736 -16.67089 -16.55437 -16.36160 -15.80530 -15.54392 -15.52090 -15.31120 -15.12960 -14.97526 -14.61110 -14.28000 -14.15903 -13.90519 -13.20502 -13.16354 -12.93623 -12.67528 -12.64040 -12.54995 -12.36414 -12.31922 -12.06214 -12.00795 -11.89071 -11.82189 -11.64882 -11.51747 -11.34027 -11.03451 -10.64927 -10.58131 -10.54517 -10.13493 -9.81102 -8.69342 -7.85519 -5.30332 -0.86234 0.03961 0.61401 1.30679 1.47429 1.48937 1.57409 2.06100 2.13702 2.51999 2.83228 3.02278 3.30010 3.59491 3.67070 3.72861 3.84964 3.88442 4.05657 4.06091 4.12253 4.26623 4.30532 4.43290 4.50938 4.70158 4.73379 4.81176 4.83953 4.86402 4.88673 4.96199 5.06965 5.10712 5.15284 5.16139 5.30377 5.32870 5.43548 5.44169 5.54901 5.68883 5.75386 6.40307 6.41464 6.50757 7.08524 7.15861 7.87858 8.39971 9.21122 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024628 B = 0.002295 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.630644 B =12197.950256 C =12414.393366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.072 0.928 4 C -0.118 4.118 5 C 0.163 3.837 6 H 0.067 0.933 7 N -0.696 5.696 8 C 0.592 3.408 9 O -0.581 6.581 10 C -0.325 4.325 11 C 0.112 3.888 12 N -0.497 5.497 13 C 0.083 3.917 14 C -0.119 4.119 15 C -0.142 4.142 16 C -0.146 4.146 17 S 0.227 5.773 18 C -0.133 4.133 19 C 0.185 3.815 20 N -0.599 5.599 21 C -0.255 4.255 22 H 0.073 0.927 23 C -0.054 4.054 24 N -0.937 5.937 25 Si 0.965 3.035 26 H -0.288 1.288 27 H -0.300 1.300 28 H -0.265 1.265 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.028 0.972 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.414 0.586 35 H 0.207 0.793 36 H 0.151 0.849 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.053 0.947 44 H -0.009 1.009 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -10.131 26.676 28.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.090 0.910 4 C -0.157 4.157 5 C 0.059 3.941 6 H 0.085 0.915 7 N -0.347 5.347 8 C 0.378 3.622 9 O -0.463 6.463 10 C -0.449 4.449 11 C -0.047 4.047 12 N -0.212 5.212 13 C -0.190 4.190 14 C -0.141 4.141 15 C -0.181 4.181 16 C -0.185 4.185 17 S 0.488 5.512 18 C -0.173 4.173 19 C 0.058 3.942 20 N -0.321 5.321 21 C -0.385 4.385 22 H 0.091 0.909 23 C -0.249 4.249 24 N -0.583 5.583 25 Si 0.794 3.206 26 H -0.215 1.215 27 H -0.227 1.227 28 H -0.190 1.190 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.252 0.748 35 H 0.223 0.777 36 H 0.169 0.831 37 H 0.113 0.887 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.009 0.991 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.517 -11.073 26.178 28.535 hybrid contribution 1.010 1.097 -1.624 2.205 sum 3.527 -9.976 24.553 26.736 Atomic orbital electron populations 1.22197 0.98216 1.00301 1.00624 1.20716 0.92182 0.95605 0.86185 0.90959 1.22148 1.02136 0.92404 0.99038 1.20806 0.98499 0.92177 0.82648 0.91539 1.45785 1.34742 1.25883 1.28258 1.17019 0.82005 0.80526 0.82636 1.90842 1.30153 1.66917 1.58352 1.25599 1.07755 1.05873 1.05708 1.22534 0.94386 0.99650 0.88175 1.66134 1.28249 1.04839 1.21956 1.27082 0.94760 0.97136 0.99988 1.20885 0.98551 0.99144 0.95515 1.23096 0.99970 1.00659 0.94344 1.23154 0.94873 0.98432 1.02083 1.84100 1.29964 1.19660 1.17446 1.22339 1.00415 0.98250 0.96295 1.20414 0.95503 0.83724 0.94559 1.44381 1.64241 1.03502 1.20006 1.19540 1.21752 1.09933 0.87296 0.90916 1.25812 0.99539 1.00841 0.98733 1.70206 1.33682 1.37569 1.16831 0.85290 0.78813 0.78500 0.77994 1.21463 1.22686 1.18968 0.94737 0.90652 0.95228 0.88840 0.90487 0.74823 0.77656 0.83123 0.88721 0.85627 0.85304 0.89486 0.91975 0.93919 0.92821 0.99064 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 9.03 71.98 0.65 -5.14 16 2 C 0.16 6.16 3.28 44.97 0.15 6.30 16 3 H 0.07 2.70 7.93 -2.39 -0.02 2.68 16 4 C -0.12 -3.50 5.03 30.67 0.15 -3.34 16 5 C 0.16 5.43 2.21 45.02 0.10 5.53 16 6 H 0.07 2.57 5.94 -2.38 -0.01 2.56 16 7 N -0.70 -18.44 5.06 -446.39 -2.26 -20.70 16 8 C 0.59 18.02 7.75 86.45 0.67 18.69 16 9 O -0.58 -22.99 16.63 -4.32 -0.07 -23.06 16 10 C -0.32 -7.87 6.48 23.88 0.15 -7.71 16 11 C 0.11 2.17 10.93 84.23 0.92 3.09 16 12 N -0.50 -9.93 9.98 -190.30 -1.90 -11.82 16 13 C 0.08 1.49 6.96 88.46 0.62 2.11 16 14 C -0.12 -1.36 6.28 -11.54 -0.07 -1.43 16 15 C -0.14 -1.32 10.12 30.60 0.31 -1.01 16 16 C -0.15 -1.34 10.23 30.60 0.31 -1.02 16 17 S 0.23 4.76 23.01 -56.49 -1.30 3.46 16 18 C -0.13 -5.33 5.65 30.67 0.17 -5.15 16 19 C 0.18 9.22 4.90 86.36 0.42 9.64 16 20 N -0.60 -29.23 2.70 -675.24 -1.82 -31.06 16 21 C -0.25 -13.70 9.58 84.03 0.81 -12.89 16 22 H 0.07 3.75 7.89 -2.91 -0.02 3.72 16 23 C -0.05 -3.02 4.91 84.86 0.42 -2.61 16 24 N -0.94 -56.39 11.19 21.65 0.24 -56.14 16 25 Si 0.97 44.99 29.59 68.60 2.03 47.02 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 27 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H 0.03 1.38 5.74 -2.39 -0.01 1.37 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.41 7.75 7.31 -92.70 -0.68 7.08 16 35 H 0.21 2.66 7.15 -2.91 -0.02 2.64 16 36 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.20 7.84 -2.39 -0.02 1.19 16 38 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 3.05 6.04 -2.39 -0.01 3.04 16 44 H -0.01 -0.48 7.50 -2.39 -0.02 -0.50 16 45 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -72.70 375.90 1.04 -71.66 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.34 Total: 15.59 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.78 Total: 5.04 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -5.74 Total: -119.72 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.07 Total: -23.06 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.30 Total: 3.46 kcal Total: -72.70 1.04 -71.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947949559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.627 kcal (2) G-P(sol) polarization free energy of solvation -72.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds