Wall clock time and date at job start Tue Mar 31 2020 19:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.58508 * 2 1 4 4 C 1.53191 * 109.70285 * 239.64247 * 2 1 3 5 5 C 1.53046 * 109.31122 * 185.50656 * 4 2 1 6 6 H 1.08990 * 109.44914 * 181.38133 * 5 4 2 7 7 N 1.46507 * 109.46194 * 301.34922 * 5 4 2 8 8 C 1.34773 * 119.99739 * 205.06949 * 7 5 4 9 9 O 1.21684 * 119.99949 * 359.72117 * 8 7 5 10 10 C 1.46684 * 119.99545 * 179.97438 * 8 7 5 11 11 C 1.35658 * 126.13266 * 359.41410 * 10 8 7 12 12 N 1.30950 * 114.19246 * 179.78279 * 11 10 8 13 13 C 1.29426 * 117.35859 * 0.52707 * 12 11 10 14 14 C 1.50708 * 124.80010 * 179.68416 * 13 12 11 15 15 C 1.52998 * 117.49704 * 8.77076 * 14 13 12 16 16 C 1.52995 * 117.49797 * 300.11187 * 14 13 12 17 17 S 1.70948 * 110.39518 * 359.70455 * 13 12 11 18 18 C 1.53041 * 109.53569 * 61.36494 * 5 4 2 19 19 C 1.53190 * 109.31860 * 298.63762 * 18 5 4 20 20 N 1.46926 * 108.77702 * 54.62987 * 19 18 5 21 21 C 1.36938 * 120.63004 * 126.37151 * 20 19 18 22 22 H 1.08000 * 119.99609 * 221.18953 * 21 20 19 23 23 C 1.38806 * 119.99732 * 41.18768 * 21 20 19 24 24 N 1.31622 * 119.99976 * 214.83845 * 23 21 20 25 25 Si 1.86795 * 120.00104 * 34.84073 * 23 21 20 26 26 H 1.48497 * 109.47399 * 84.62818 * 25 23 21 27 27 H 1.48508 * 109.47122 * 204.62651 * 25 23 21 28 28 H 1.48501 * 109.47396 * 324.62317 * 25 23 21 29 29 H 1.09002 * 109.47421 * 299.71780 * 1 2 3 30 30 H 1.09001 * 109.47527 * 59.71830 * 1 2 3 31 31 H 1.09002 * 109.47504 * 179.71590 * 1 2 3 32 32 H 1.08998 * 109.49662 * 65.56565 * 4 2 1 33 33 H 1.08997 * 109.50260 * 305.45598 * 4 2 1 34 34 H 0.97000 * 119.99626 * 25.06423 * 7 5 4 35 35 H 1.08004 * 122.90428 * 359.97438 * 11 10 8 36 36 H 1.08993 * 115.54467 * 154.44311 * 14 13 12 37 37 H 1.08995 * 117.49942 * 0.02562 * 15 14 13 38 38 H 1.09000 * 117.49383 * 145.02105 * 15 14 13 39 39 H 1.08998 * 117.49939 * 214.98144 * 16 14 13 40 40 H 1.09003 * 117.49875 * 359.97438 * 16 14 13 41 41 H 1.09002 * 109.49551 * 58.58836 * 18 5 4 42 42 H 1.09002 * 109.49959 * 178.67918 * 18 5 4 43 43 H 1.08991 * 109.58725 * 174.42441 * 19 18 5 44 44 H 1.09006 * 109.58350 * 294.70744 * 19 18 5 45 45 H 0.96999 * 120.00082 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0464 -0.7289 -1.2445 5 6 3.5706 -0.8443 -1.1673 6 1 3.9427 -1.3409 -2.0634 7 7 4.1573 0.4947 -1.0720 8 6 5.4210 0.7079 -1.4892 9 8 6.0763 -0.2128 -1.9404 10 6 6.0082 2.0487 -1.3942 11 6 5.3917 3.1603 -0.9201 12 7 6.1377 4.2363 -0.9373 13 6 7.3400 4.1192 -1.4022 14 6 8.3356 5.2458 -1.5057 15 6 7.9701 6.5749 -0.8417 16 6 7.9520 6.4506 -2.3672 17 16 7.6384 2.5060 -1.8825 18 6 3.9601 -1.6607 0.0671 19 6 3.4653 -0.9425 1.3265 20 7 2.0225 -0.6980 1.1954 21 6 1.1532 -1.1133 2.1686 22 1 0.2064 -1.5547 1.8944 23 6 1.4890 -0.9671 3.5075 24 7 1.1081 -1.8719 4.3842 25 14 2.4815 0.5139 4.0651 26 1 1.5678 1.6591 4.3081 27 1 3.2036 0.1820 5.3196 28 1 3.4621 0.8780 3.0111 29 1 -0.3634 0.5094 0.8925 30 1 -0.3634 0.5182 -0.8874 31 1 -0.3634 -1.0276 -0.0051 32 1 1.7689 -0.1672 -2.1364 33 1 1.6080 -1.7257 -1.2905 34 1 3.6362 1.2277 -0.7086 35 1 4.3746 3.1572 -0.5567 36 1 9.3842 4.9489 -1.4940 37 1 7.0098 6.6343 -0.3296 38 1 8.7785 7.1525 -0.3934 39 1 8.7485 6.9466 -2.9220 40 1 6.9797 6.4282 -2.8595 41 1 3.5036 -2.6488 0.0087 42 1 5.0446 -1.7625 0.1087 43 1 3.6523 -1.5666 2.2003 44 1 3.9903 0.0065 1.4361 45 1 1.3424 -1.7695 5.3199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947949561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:08 Heat of formation + Delta-G solvation = 57.824890 kcal Electronic energy + Delta-G solvation = -26901.335437 eV Core-core repulsion = 23240.142049 eV Total energy + Delta-G solvation = -3661.193388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.46642 -39.62353 -37.85397 -37.14466 -34.45090 -32.42338 -31.87132 -30.92335 -29.62722 -26.87165 -26.48281 -24.86241 -23.27625 -22.75681 -22.47024 -21.89387 -20.67790 -19.58608 -18.96483 -18.36256 -17.24928 -16.57825 -16.05857 -15.58646 -15.24246 -15.09575 -14.80083 -14.56267 -14.47560 -14.28440 -13.81807 -13.65065 -13.31368 -13.09654 -12.60673 -12.46042 -12.01003 -11.93968 -11.87994 -11.67566 -11.52151 -11.28022 -11.22799 -11.03676 -10.96521 -10.67707 -10.48060 -10.34211 -10.27442 -10.02213 -9.79199 -9.68937 -9.63834 -9.45494 -9.07473 -8.81559 -8.37622 -6.74051 -6.11249 -3.41913 0.04302 0.91848 1.47150 2.24272 3.15254 3.32836 3.37786 3.43596 3.48601 3.52282 3.72671 4.35216 4.42245 4.54575 4.56474 4.72180 4.87370 4.93629 5.02717 5.18972 5.22438 5.25268 5.39147 5.43701 5.48563 5.60027 5.77247 5.77963 5.83737 5.92786 6.03215 6.13036 6.24980 6.33383 6.38417 6.40194 6.50319 6.69790 6.82186 6.86472 6.99257 7.05789 7.38251 7.54692 8.00371 8.20245 8.39553 8.97032 9.69222 10.17582 11.04210 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.003364 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.964746 B = 8321.492232 C = 9177.853573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.165 3.835 3 H 0.019 0.981 4 C -0.138 4.138 5 C 0.156 3.844 6 H 0.080 0.920 7 N -0.702 5.702 8 C 0.593 3.407 9 O -0.541 6.541 10 C -0.293 4.293 11 C 0.095 3.905 12 N -0.478 5.478 13 C 0.068 3.932 14 C -0.102 4.102 15 C -0.148 4.148 16 C -0.154 4.154 17 S 0.232 5.768 18 C -0.148 4.148 19 C 0.146 3.854 20 N -0.594 5.594 21 C -0.276 4.276 22 H 0.077 0.923 23 C 0.051 3.949 24 N -0.879 5.879 25 Si 0.842 3.158 26 H -0.288 1.288 27 H -0.298 1.298 28 H -0.262 1.262 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.401 0.599 35 H 0.181 0.819 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.022 0.978 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.262 13.564 -14.545 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.037 0.963 4 C -0.178 4.178 5 C 0.052 3.948 6 H 0.098 0.902 7 N -0.354 5.354 8 C 0.378 3.622 9 O -0.420 6.420 10 C -0.417 4.417 11 C -0.063 4.063 12 N -0.192 5.192 13 C -0.206 4.206 14 C -0.124 4.124 15 C -0.187 4.187 16 C -0.193 4.193 17 S 0.491 5.509 18 C -0.188 4.188 19 C 0.021 3.979 20 N -0.318 5.318 21 C -0.404 4.404 22 H 0.094 0.906 23 C -0.152 4.152 24 N -0.517 5.517 25 Si 0.669 3.331 26 H -0.215 1.215 27 H -0.225 1.225 28 H -0.187 1.187 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.237 0.763 35 H 0.198 0.802 36 H 0.147 0.853 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.040 0.960 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.408 12.747 -14.940 23.779 hybrid contribution -0.655 1.155 1.188 1.782 sum 12.753 13.902 -13.752 23.346 Atomic orbital electron populations 1.21758 0.95050 1.02016 1.00340 1.20515 0.93910 0.92709 0.87031 0.96340 1.22356 0.93395 1.02840 0.99207 1.20980 0.93350 0.81509 0.98990 0.90199 1.45970 1.13274 1.13091 1.63047 1.16668 0.82050 0.85413 0.78117 1.90821 1.60801 1.43708 1.46665 1.25866 1.00090 1.00254 1.15533 1.22162 1.00963 0.85618 0.97564 1.66015 1.03928 1.31235 1.18008 1.26506 0.95274 0.98671 1.00160 1.20555 0.96139 0.86276 1.09404 1.23042 1.04330 0.95968 0.95318 1.23071 1.03622 0.98334 0.94250 1.83957 1.09921 1.01883 1.55094 1.22430 1.00169 0.99790 0.96412 1.21228 0.84672 0.96664 0.95363 1.44375 1.02220 1.65367 1.19854 1.18569 1.02392 1.35116 0.84288 0.90552 1.25584 0.96739 0.96870 0.95960 1.70081 1.47069 1.31282 1.03305 0.87390 0.80633 0.86926 0.78106 1.21525 1.22455 1.18687 0.91696 0.94286 0.92321 0.92217 0.90032 0.76311 0.80216 0.85293 0.87204 0.87929 0.87719 0.88196 0.90720 0.92426 0.91552 0.95979 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.07 37.15 0.30 -2.02 16 2 C 0.16 2.94 3.19 -67.60 -0.22 2.73 16 3 H 0.02 0.33 6.64 -51.93 -0.34 -0.02 16 4 C -0.14 -2.10 5.08 -26.61 -0.14 -2.24 16 5 C 0.16 2.47 2.78 -67.88 -0.19 2.28 16 6 H 0.08 1.27 7.58 -51.93 -0.39 0.87 16 7 N -0.70 -10.53 4.25 -55.07 -0.23 -10.77 16 8 C 0.59 9.37 7.75 -12.85 -0.10 9.28 16 9 O -0.54 -10.02 16.63 5.20 0.09 -9.94 16 10 C -0.29 -4.02 6.48 -37.10 -0.24 -4.26 16 11 C 0.10 1.21 10.93 -18.85 -0.21 1.01 16 12 N -0.48 -6.01 9.98 -11.50 -0.11 -6.13 16 13 C 0.07 0.74 6.96 -13.29 -0.09 0.64 16 14 C -0.10 -0.80 6.28 -91.77 -0.58 -1.38 16 15 C -0.15 -1.06 10.12 -26.70 -0.27 -1.33 16 16 C -0.15 -1.00 10.24 -26.70 -0.27 -1.27 16 17 S 0.23 2.65 23.01 -107.50 -2.47 0.18 16 18 C -0.15 -2.67 5.77 -26.61 -0.15 -2.83 16 19 C 0.15 3.10 4.33 -3.71 -0.02 3.08 16 20 N -0.59 -13.08 2.47 -164.78 -0.41 -13.49 16 21 C -0.28 -7.21 8.42 -15.06 -0.13 -7.34 16 22 H 0.08 2.14 6.83 -52.49 -0.36 1.78 16 23 C 0.05 1.42 4.82 -17.43 -0.08 1.34 16 24 N -0.88 -25.90 13.97 55.49 0.78 -25.12 16 25 Si 0.84 21.03 27.39 -169.99 -4.66 16.38 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 28 H -0.26 -6.27 5.24 56.52 0.30 -5.97 16 29 H 0.06 1.24 7.68 -51.93 -0.40 0.84 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.07 7.42 -51.93 -0.39 0.68 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.40 5.56 5.58 -40.82 -0.23 5.33 16 35 H 0.18 1.99 7.15 -52.48 -0.38 1.62 16 36 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.11 0.97 7.84 -51.93 -0.41 0.56 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.56 7.01 -51.93 -0.36 1.20 16 44 H 0.02 0.48 6.31 -51.93 -0.33 0.15 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -31.47 370.00 -10.45 -41.92 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.63 Total: 3.71 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.38 Total: -2.32 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.02 Total: -55.51 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.66 Total: 16.38 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.47 Total: 0.18 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.47 -10.45 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947949561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.750 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds