Wall clock time and date at job start Tue Mar 31 2020 19:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.58508 * 2 1 4 4 C 1.53191 * 109.70285 * 239.64247 * 2 1 3 5 5 C 1.53046 * 109.31122 * 185.50656 * 4 2 1 6 6 H 1.08990 * 109.44914 * 181.38133 * 5 4 2 7 7 N 1.46507 * 109.46194 * 301.34922 * 5 4 2 8 8 C 1.34773 * 119.99739 * 205.06949 * 7 5 4 9 9 O 1.21684 * 119.99949 * 359.72117 * 8 7 5 10 10 C 1.46684 * 119.99545 * 179.97438 * 8 7 5 11 11 C 1.35658 * 126.13266 * 359.41410 * 10 8 7 12 12 N 1.30950 * 114.19246 * 179.78279 * 11 10 8 13 13 C 1.29426 * 117.35859 * 0.52707 * 12 11 10 14 14 C 1.50708 * 124.80010 * 179.68416 * 13 12 11 15 15 C 1.52998 * 117.49704 * 8.77076 * 14 13 12 16 16 C 1.52995 * 117.49797 * 300.11187 * 14 13 12 17 17 S 1.70948 * 110.39518 * 359.70455 * 13 12 11 18 18 C 1.53041 * 109.53569 * 61.36494 * 5 4 2 19 19 C 1.53190 * 109.31860 * 298.63762 * 18 5 4 20 20 N 1.46926 * 108.77702 * 54.62987 * 19 18 5 21 21 C 1.36938 * 120.63004 * 126.37151 * 20 19 18 22 22 H 1.08000 * 119.99609 * 221.18953 * 21 20 19 23 23 C 1.38806 * 119.99732 * 41.18768 * 21 20 19 24 24 N 1.31622 * 119.99976 * 214.83845 * 23 21 20 25 25 Si 1.86795 * 120.00104 * 34.84073 * 23 21 20 26 26 H 1.48497 * 109.47399 * 84.62818 * 25 23 21 27 27 H 1.48508 * 109.47122 * 204.62651 * 25 23 21 28 28 H 1.48501 * 109.47396 * 324.62317 * 25 23 21 29 29 H 1.09002 * 109.47421 * 299.71780 * 1 2 3 30 30 H 1.09001 * 109.47527 * 59.71830 * 1 2 3 31 31 H 1.09002 * 109.47504 * 179.71590 * 1 2 3 32 32 H 1.08998 * 109.49662 * 65.56565 * 4 2 1 33 33 H 1.08997 * 109.50260 * 305.45598 * 4 2 1 34 34 H 0.97000 * 119.99626 * 25.06423 * 7 5 4 35 35 H 1.08004 * 122.90428 * 359.97438 * 11 10 8 36 36 H 1.08993 * 115.54467 * 154.44311 * 14 13 12 37 37 H 1.08995 * 117.49942 * 0.02562 * 15 14 13 38 38 H 1.09000 * 117.49383 * 145.02105 * 15 14 13 39 39 H 1.08998 * 117.49939 * 214.98144 * 16 14 13 40 40 H 1.09003 * 117.49875 * 359.97438 * 16 14 13 41 41 H 1.09002 * 109.49551 * 58.58836 * 18 5 4 42 42 H 1.09002 * 109.49959 * 178.67918 * 18 5 4 43 43 H 1.08991 * 109.58725 * 174.42441 * 19 18 5 44 44 H 1.09006 * 109.58350 * 294.70744 * 19 18 5 45 45 H 0.96999 * 120.00082 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0464 -0.7289 -1.2445 5 6 3.5706 -0.8443 -1.1673 6 1 3.9427 -1.3409 -2.0634 7 7 4.1573 0.4947 -1.0720 8 6 5.4210 0.7079 -1.4892 9 8 6.0763 -0.2128 -1.9404 10 6 6.0082 2.0487 -1.3942 11 6 5.3917 3.1603 -0.9201 12 7 6.1377 4.2363 -0.9373 13 6 7.3400 4.1192 -1.4022 14 6 8.3356 5.2458 -1.5057 15 6 7.9701 6.5749 -0.8417 16 6 7.9520 6.4506 -2.3672 17 16 7.6384 2.5060 -1.8825 18 6 3.9601 -1.6607 0.0671 19 6 3.4653 -0.9425 1.3265 20 7 2.0225 -0.6980 1.1954 21 6 1.1532 -1.1133 2.1686 22 1 0.2064 -1.5547 1.8944 23 6 1.4890 -0.9671 3.5075 24 7 1.1081 -1.8719 4.3842 25 14 2.4815 0.5139 4.0651 26 1 1.5678 1.6591 4.3081 27 1 3.2036 0.1820 5.3196 28 1 3.4621 0.8780 3.0111 29 1 -0.3634 0.5094 0.8925 30 1 -0.3634 0.5182 -0.8874 31 1 -0.3634 -1.0276 -0.0051 32 1 1.7689 -0.1672 -2.1364 33 1 1.6080 -1.7257 -1.2905 34 1 3.6362 1.2277 -0.7086 35 1 4.3746 3.1572 -0.5567 36 1 9.3842 4.9489 -1.4940 37 1 7.0098 6.6343 -0.3296 38 1 8.7785 7.1525 -0.3934 39 1 8.7485 6.9466 -2.9220 40 1 6.9797 6.4282 -2.8595 41 1 3.5036 -2.6488 0.0087 42 1 5.0446 -1.7625 0.1087 43 1 3.6523 -1.5666 2.2003 44 1 3.9903 0.0065 1.4361 45 1 1.3424 -1.7695 5.3199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947949561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:07 Heat of formation + Delta-G solvation = 38.623916 kcal Electronic energy + Delta-G solvation = -26902.168054 eV Core-core repulsion = 23240.142049 eV Total energy + Delta-G solvation = -3662.026004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55220 -40.72133 -39.26550 -37.80611 -35.98026 -34.18555 -33.28566 -32.45654 -30.84282 -28.15040 -27.58538 -26.62529 -24.24035 -24.02153 -23.26488 -22.98412 -22.15857 -20.71812 -20.33386 -19.29569 -18.35130 -18.24033 -17.13279 -16.87257 -16.62234 -16.41208 -16.19180 -15.71234 -15.47529 -15.41763 -15.24482 -14.94646 -14.70747 -14.56625 -14.34344 -13.71921 -13.34313 -13.20441 -13.15810 -12.76278 -12.65440 -12.56801 -12.47903 -12.38297 -12.21080 -11.90685 -11.87930 -11.71404 -11.65002 -11.53205 -11.32339 -11.12343 -10.67104 -10.58116 -10.47863 -10.18829 -9.83833 -8.60337 -8.24636 -5.49670 -0.88876 0.02372 0.57241 1.28061 1.35867 1.43451 1.49268 2.03130 2.16649 2.47427 2.80323 2.94753 3.01074 3.41370 3.63291 3.70271 3.86998 3.88262 3.98997 4.03792 4.08198 4.12808 4.27127 4.31610 4.50788 4.57226 4.63921 4.79659 4.83095 4.89519 4.93066 4.94701 4.99614 5.06323 5.08805 5.13546 5.14351 5.24136 5.28688 5.44368 5.52803 5.61759 5.95531 6.30336 6.35772 6.48760 7.01962 7.03775 7.68710 8.18774 8.95337 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.003364 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.964746 B = 8321.492232 C = 9177.853573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.157 3.843 3 H 0.039 0.961 4 C -0.126 4.126 5 C 0.162 3.838 6 H 0.087 0.913 7 N -0.697 5.697 8 C 0.596 3.404 9 O -0.574 6.574 10 C -0.326 4.326 11 C 0.105 3.895 12 N -0.500 5.500 13 C 0.080 3.920 14 C -0.118 4.118 15 C -0.148 4.148 16 C -0.140 4.140 17 S 0.244 5.756 18 C -0.139 4.139 19 C 0.149 3.851 20 N -0.604 5.604 21 C -0.252 4.252 22 H 0.050 0.950 23 C -0.001 4.001 24 N -0.928 5.928 25 Si 0.898 3.102 26 H -0.290 1.290 27 H -0.309 1.309 28 H -0.246 1.246 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.407 0.593 35 H 0.193 0.807 36 H 0.153 0.847 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.034 0.966 44 H 0.024 0.976 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.713 16.194 -16.845 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.052 3.948 3 H 0.056 0.944 4 C -0.165 4.165 5 C 0.058 3.942 6 H 0.105 0.895 7 N -0.349 5.349 8 C 0.382 3.618 9 O -0.455 6.455 10 C -0.450 4.450 11 C -0.054 4.054 12 N -0.215 5.215 13 C -0.193 4.193 14 C -0.140 4.140 15 C -0.187 4.187 16 C -0.179 4.179 17 S 0.505 5.495 18 C -0.179 4.179 19 C 0.024 3.976 20 N -0.329 5.329 21 C -0.382 4.382 22 H 0.068 0.932 23 C -0.200 4.200 24 N -0.571 5.571 25 Si 0.725 3.275 26 H -0.217 1.217 27 H -0.237 1.237 28 H -0.170 1.170 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.245 0.755 35 H 0.210 0.790 36 H 0.171 0.829 37 H 0.108 0.892 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.867 15.413 -17.282 27.518 hybrid contribution -1.088 0.389 1.816 2.152 sum 13.780 15.802 -15.466 26.053 Atomic orbital electron populations 1.21707 0.94561 1.01258 1.01146 1.20795 0.94434 0.93524 0.86042 0.94381 1.22240 0.92463 1.02808 0.98983 1.20858 0.93867 0.81756 0.97759 0.89540 1.45877 1.13281 1.12824 1.62908 1.16874 0.81844 0.85831 0.77221 1.90799 1.61560 1.44916 1.48268 1.25702 1.01578 0.99556 1.18190 1.22401 1.01458 0.85311 0.96278 1.66114 1.04749 1.31230 1.19393 1.27116 0.95163 0.99209 0.97837 1.20895 0.96517 0.85766 1.10813 1.23093 1.04156 0.95533 0.95892 1.23160 1.03910 0.96878 0.93994 1.83884 1.08753 1.02073 1.54840 1.22290 0.99818 0.99653 0.96107 1.21118 0.84349 0.96423 0.95712 1.44487 1.02017 1.66162 1.20239 1.18492 1.01601 1.33032 0.85044 0.93214 1.26063 0.98782 0.98781 0.96376 1.70174 1.50316 1.33122 1.03472 0.86495 0.79558 0.83875 0.77545 1.21743 1.23676 1.16959 0.94058 0.90249 0.93934 0.88713 0.90477 0.75516 0.79009 0.82940 0.89172 0.85701 0.85021 0.89361 0.91231 0.92644 0.94687 0.95774 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 8.07 71.98 0.58 -3.64 16 2 C 0.16 5.25 3.19 44.97 0.14 5.39 16 3 H 0.04 1.18 6.64 -2.39 -0.02 1.16 16 4 C -0.13 -3.44 5.08 30.67 0.16 -3.29 16 5 C 0.16 4.78 2.78 45.02 0.13 4.90 16 6 H 0.09 2.54 7.58 -2.39 -0.02 2.52 16 7 N -0.70 -19.34 4.25 -446.37 -1.90 -21.24 16 8 C 0.60 17.94 7.75 86.45 0.67 18.61 16 9 O -0.57 -20.69 16.63 -4.30 -0.07 -20.76 16 10 C -0.33 -8.44 6.48 23.88 0.15 -8.28 16 11 C 0.10 2.47 10.93 84.23 0.92 3.39 16 12 N -0.50 -11.69 9.98 -190.29 -1.90 -13.58 16 13 C 0.08 1.57 6.96 88.47 0.62 2.19 16 14 C -0.12 -1.52 6.28 -11.54 -0.07 -1.59 16 15 C -0.15 -1.72 10.12 30.62 0.31 -1.41 16 16 C -0.14 -1.40 10.24 30.62 0.31 -1.08 16 17 S 0.24 5.19 23.01 -56.49 -1.30 3.89 16 18 C -0.14 -4.90 5.77 30.67 0.18 -4.72 16 19 C 0.15 6.25 4.33 86.36 0.37 6.62 16 20 N -0.60 -26.22 2.47 -675.24 -1.67 -27.89 16 21 C -0.25 -13.39 8.42 84.03 0.71 -12.68 16 22 H 0.05 2.89 6.83 -2.91 -0.02 2.87 16 23 C 0.00 -0.08 4.82 84.86 0.41 0.33 16 24 N -0.93 -56.68 13.97 21.65 0.30 -56.38 16 25 Si 0.90 44.21 27.39 68.60 1.88 46.09 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.31 -15.72 7.11 99.48 0.71 -15.02 16 28 H -0.25 -11.24 5.24 99.48 0.52 -10.72 16 29 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.04 1.51 7.42 -2.39 -0.02 1.49 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 34 H 0.41 10.13 5.58 -92.71 -0.52 9.62 16 35 H 0.19 3.81 7.15 -2.91 -0.02 3.79 16 36 H 0.15 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.44 7.84 -2.39 -0.02 1.42 16 38 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.13 0.62 8.14 -2.39 -0.02 0.61 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.03 1.67 7.01 -2.39 -0.02 1.65 16 44 H 0.02 1.01 6.31 -2.38 -0.02 1.00 16 45 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -69.79 370.00 1.24 -68.55 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.31 Total: 16.59 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.59 Total: 4.73 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -5.16 Total: -119.09 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.07 Total: -20.76 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.09 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.30 Total: 3.89 kcal Total: -69.79 1.24 -68.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947949561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.173 kcal (2) G-P(sol) polarization free energy of solvation -69.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds