Wall clock time and date at job start Tue Mar 31 2020 19:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.70009 * 2 1 4 4 C 1.53187 * 109.58706 * 239.64825 * 2 1 3 5 5 C 1.53034 * 109.31453 * 185.57737 * 4 2 1 6 6 H 1.09005 * 109.44548 * 301.34707 * 5 4 2 7 7 N 1.46506 * 109.46386 * 181.38512 * 5 4 2 8 8 C 1.34777 * 120.00067 * 154.92708 * 7 5 4 9 9 O 1.21685 * 120.00270 * 0.02562 * 8 7 5 10 10 C 1.46680 * 119.99653 * 180.02562 * 8 7 5 11 11 C 1.35665 * 126.13075 * 0.02562 * 10 8 7 12 12 N 1.30947 * 114.18921 * 179.74403 * 11 10 8 13 13 C 1.29430 * 117.36334 * 0.45692 * 12 11 10 14 14 C 1.50704 * 124.80368 * 179.83512 * 13 12 11 15 15 C 1.53000 * 117.49831 * 8.31217 * 14 13 12 16 16 C 1.52998 * 60.00049 * 252.51411 * 15 14 13 17 17 S 1.70945 * 110.39172 * 359.56093 * 13 12 11 18 18 C 1.53041 * 109.54200 * 61.36202 * 5 4 2 19 19 C 1.53190 * 109.31028 * 298.63676 * 18 5 4 20 20 N 1.46929 * 109.58775 * 120.35467 * 2 1 3 21 21 C 1.36926 * 120.63131 * 353.37588 * 20 2 1 22 22 H 1.08006 * 120.00125 * 29.03964 * 21 20 2 23 23 C 1.38815 * 120.00520 * 209.03497 * 21 20 2 24 24 N 1.31625 * 119.99187 * 15.01244 * 23 21 20 25 25 Si 1.86793 * 120.00463 * 195.01444 * 23 21 20 26 26 H 1.48497 * 109.46979 * 60.00216 * 25 23 21 27 27 H 1.48500 * 109.47050 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47109 * 299.99993 * 25 23 21 29 29 H 1.09006 * 109.46798 * 299.63994 * 1 2 3 30 30 H 1.08993 * 109.47243 * 59.63976 * 1 2 3 31 31 H 1.08997 * 109.46804 * 179.64608 * 1 2 3 32 32 H 1.09002 * 109.49968 * 65.62349 * 4 2 1 33 33 H 1.09006 * 109.50002 * 305.52841 * 4 2 1 34 34 H 0.96998 * 119.99735 * 334.92928 * 7 5 4 35 35 H 1.07992 * 122.90759 * 359.97438 * 11 10 8 36 36 H 1.08998 * 115.55062 * 154.02444 * 14 13 12 37 37 H 1.09000 * 117.49853 * 0.02562 * 15 14 13 38 38 H 1.08996 * 117.49962 * 145.02469 * 15 14 13 39 39 H 1.08999 * 117.50179 * 252.51271 * 16 15 14 40 40 H 1.08999 * 117.50115 * 107.48694 * 16 15 14 41 41 H 1.09003 * 109.49298 * 58.58551 * 18 5 4 42 42 H 1.08995 * 109.50038 * 178.65591 * 18 5 4 43 43 H 1.09003 * 109.58721 * 174.41780 * 19 18 5 44 44 H 1.09001 * 109.58864 * 294.70328 * 19 18 5 45 45 H 0.97006 * 119.99556 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 3.5675 -0.8479 -1.1702 6 1 4.0059 0.1476 -1.0993 7 7 4.0652 -1.5156 -2.3755 8 6 5.3290 -1.3008 -2.7917 9 8 6.0568 -0.5527 -2.1661 10 6 5.8271 -1.9689 -3.9987 11 6 5.1270 -2.8227 -4.7871 12 7 5.8007 -3.2811 -5.8122 13 6 7.0255 -2.8842 -5.9447 14 6 7.9513 -3.3074 -7.0560 15 6 7.3503 -4.1177 -8.2062 16 6 8.2635 -4.7996 -7.1856 17 16 7.4419 -1.8062 -4.6851 18 6 3.9570 -1.6656 0.0634 19 6 3.4652 -0.9469 1.3236 20 7 2.0226 -0.6995 1.1945 21 6 1.1539 -1.1127 2.1689 22 1 0.1361 -1.3673 1.9125 23 6 1.5812 -1.2044 3.4865 24 7 2.7046 -0.6262 3.8556 25 14 0.5622 -2.1483 4.7354 26 1 0.4326 -3.5624 4.3011 27 1 1.2313 -2.0973 6.0602 28 1 -0.7869 -1.5361 4.8377 29 1 -0.3633 0.5083 0.8933 30 1 -0.3633 0.5194 -0.8867 31 1 -0.3633 -1.0276 -0.0063 32 1 1.7660 -0.1667 -2.1368 33 1 1.6030 -1.7253 -1.2914 34 1 3.4852 -2.1122 -2.8740 35 1 4.1017 -3.0974 -4.5887 36 1 8.7478 -2.6037 -7.2979 37 1 6.2851 -4.3443 -8.1595 38 1 7.7511 -3.9470 -9.2053 39 1 9.2653 -5.0776 -7.5132 40 1 7.7993 -5.4751 -6.4671 41 1 3.4984 -2.6527 0.0051 42 1 5.0412 -1.7699 0.1033 43 1 3.6519 -1.5717 2.1971 44 1 3.9922 0.0010 1.4330 45 1 3.0031 -0.6900 4.7764 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947949562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:10 Heat of formation + Delta-G solvation = 53.157005 kcal Electronic energy + Delta-G solvation = -26096.259122 eV Core-core repulsion = 22434.863320 eV Total energy + Delta-G solvation = -3661.395802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.44449 -39.47185 -37.68931 -37.17743 -34.64538 -32.49707 -31.72953 -30.53255 -29.22419 -26.89106 -26.32588 -24.77857 -23.27679 -22.79568 -22.30507 -21.63478 -20.41455 -19.76238 -18.93901 -18.50364 -17.22503 -16.36352 -16.22003 -15.57549 -15.28468 -15.09466 -14.82330 -14.51174 -14.22000 -13.92706 -13.81820 -13.61388 -13.30051 -12.82861 -12.70680 -12.62663 -11.95270 -11.76997 -11.61358 -11.29128 -11.23667 -11.14139 -11.06286 -10.94116 -10.91111 -10.66031 -10.36382 -10.33810 -10.13903 -10.04997 -9.77145 -9.74691 -9.67001 -9.41057 -9.09468 -8.75279 -8.42444 -6.65059 -5.76805 -3.20918 0.00478 0.88126 1.44253 2.19574 3.15816 3.29994 3.38778 3.39597 3.44702 3.44957 3.67341 4.30405 4.37898 4.49098 4.52231 4.69807 4.87996 4.98099 5.21843 5.25046 5.34296 5.35738 5.42197 5.55434 5.55708 5.71936 5.74852 5.78208 5.96711 6.13711 6.20560 6.29993 6.37486 6.40804 6.48532 6.61641 6.77764 6.84059 7.01373 7.08492 7.32448 7.37594 7.55759 7.70242 7.82120 8.22607 8.47052 9.22470 9.86015 10.42858 11.31805 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.002256 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.866362 B =12406.786972 C =12570.581729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.152 3.848 6 H 0.084 0.916 7 N -0.710 5.710 8 C 0.589 3.411 9 O -0.533 6.533 10 C -0.291 4.291 11 C 0.091 3.909 12 N -0.479 5.479 13 C 0.065 3.935 14 C -0.102 4.102 15 C -0.148 4.148 16 C -0.154 4.154 17 S 0.236 5.764 18 C -0.147 4.147 19 C 0.175 3.825 20 N -0.587 5.587 21 C -0.251 4.251 22 H 0.070 0.930 23 C 0.002 3.998 24 N -0.903 5.903 25 Si 0.902 3.098 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.395 0.605 35 H 0.181 0.819 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.091 0.909 44 H 0.021 0.979 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 -5.723 -23.195 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.049 3.951 6 H 0.102 0.898 7 N -0.360 5.360 8 C 0.373 3.627 9 O -0.411 6.411 10 C -0.416 4.416 11 C -0.067 4.067 12 N -0.193 5.193 13 C -0.208 4.208 14 C -0.124 4.124 15 C -0.187 4.187 16 C -0.193 4.193 17 S 0.497 5.503 18 C -0.187 4.187 19 C 0.048 3.952 20 N -0.311 5.311 21 C -0.381 4.381 22 H 0.087 0.913 23 C -0.197 4.197 24 N -0.547 5.547 25 Si 0.732 3.268 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.209 1.209 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.229 0.771 35 H 0.198 0.802 36 H 0.147 0.853 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.109 0.891 44 H 0.039 0.961 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.895 -4.911 -22.646 25.197 hybrid contribution -1.681 -1.030 0.688 2.088 sum 8.214 -5.941 -21.958 24.185 Atomic orbital electron populations 1.21792 0.95696 1.01398 1.00403 1.20358 0.93113 0.93586 0.86579 0.95492 1.22398 0.93419 1.01772 0.99831 1.21136 0.94396 0.96813 0.82752 0.89784 1.46115 1.12301 1.48351 1.29205 1.16712 0.82536 0.81093 0.82320 1.90864 1.56190 1.37350 1.56740 1.25936 0.99719 1.10381 1.05552 1.22116 1.01131 0.94139 0.89351 1.66009 1.05587 1.26120 1.21627 1.26493 0.94522 0.99427 1.00401 1.20555 0.99838 0.96164 0.95829 1.23022 1.00825 1.01337 0.93497 1.23069 1.01401 0.92168 1.02668 1.84069 1.09826 1.39643 1.16810 1.22590 0.99812 0.99623 0.96719 1.20758 0.83199 0.97370 0.93844 1.44164 1.02987 1.64869 1.19042 1.19121 0.94800 1.37927 0.86238 0.91255 1.25107 0.97837 0.99735 0.97007 1.70009 1.23283 1.44444 1.16971 0.86386 0.79620 0.80113 0.80708 1.21111 1.21697 1.20914 0.91802 0.94285 0.92768 0.92578 0.91695 0.77100 0.80227 0.85283 0.87261 0.87955 0.87680 0.88170 0.92582 0.92841 0.89077 0.96128 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.94 37.16 0.30 -2.15 16 2 C 0.17 3.43 3.50 -67.60 -0.24 3.20 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.20 4.84 -26.62 -0.13 -2.33 16 5 C 0.15 2.62 2.42 -67.89 -0.16 2.46 16 6 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 7 N -0.71 -10.06 5.06 -55.07 -0.28 -10.34 16 8 C 0.59 9.16 7.75 -12.85 -0.10 9.06 16 9 O -0.53 -10.35 16.63 5.20 0.09 -10.27 16 10 C -0.29 -3.70 6.48 -37.10 -0.24 -3.94 16 11 C 0.09 0.99 10.93 -18.85 -0.21 0.78 16 12 N -0.48 -5.31 9.98 -11.50 -0.11 -5.43 16 13 C 0.07 0.65 6.96 -13.29 -0.09 0.55 16 14 C -0.10 -0.72 6.28 -91.77 -0.58 -1.30 16 15 C -0.15 -0.91 10.12 -26.73 -0.27 -1.18 16 16 C -0.15 -0.92 10.23 -26.73 -0.27 -1.19 16 17 S 0.24 2.57 23.01 -107.50 -2.47 0.10 16 18 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 19 C 0.17 4.20 5.29 -3.71 -0.02 4.18 16 20 N -0.59 -14.23 2.99 -164.77 -0.49 -14.73 16 21 C -0.25 -6.63 8.60 -15.06 -0.13 -6.76 16 22 H 0.07 1.77 6.21 -52.48 -0.33 1.45 16 23 C 0.00 0.05 4.96 -17.43 -0.09 -0.04 16 24 N -0.90 -26.10 11.14 55.49 0.62 -25.49 16 25 Si 0.90 21.50 29.58 -169.99 -5.03 16.48 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.98 7.45 -51.93 -0.39 0.59 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.40 4.35 7.31 -40.82 -0.30 4.06 16 35 H 0.18 1.48 7.15 -52.49 -0.38 1.11 16 36 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.11 0.82 7.84 -51.93 -0.41 0.41 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -31.89 376.73 -11.07 -42.96 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.68 Total: 2.73 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.38 Total: -1.70 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.27 Total: -55.98 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.47 Total: 0.10 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.89 -11.07 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947949562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.118 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds