Wall clock time and date at job start Tue Mar 31 2020 19:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.70009 * 2 1 4 4 C 1.53187 * 109.58706 * 239.64825 * 2 1 3 5 5 C 1.53034 * 109.31453 * 185.57737 * 4 2 1 6 6 H 1.09005 * 109.44548 * 301.34707 * 5 4 2 7 7 N 1.46506 * 109.46386 * 181.38512 * 5 4 2 8 8 C 1.34777 * 120.00067 * 154.92708 * 7 5 4 9 9 O 1.21685 * 120.00270 * 0.02562 * 8 7 5 10 10 C 1.46680 * 119.99653 * 180.02562 * 8 7 5 11 11 C 1.35665 * 126.13075 * 0.02562 * 10 8 7 12 12 N 1.30947 * 114.18921 * 179.74403 * 11 10 8 13 13 C 1.29430 * 117.36334 * 0.45692 * 12 11 10 14 14 C 1.50704 * 124.80368 * 179.83512 * 13 12 11 15 15 C 1.53000 * 117.49831 * 8.31217 * 14 13 12 16 16 C 1.52998 * 60.00049 * 252.51411 * 15 14 13 17 17 S 1.70945 * 110.39172 * 359.56093 * 13 12 11 18 18 C 1.53041 * 109.54200 * 61.36202 * 5 4 2 19 19 C 1.53190 * 109.31028 * 298.63676 * 18 5 4 20 20 N 1.46929 * 109.58775 * 120.35467 * 2 1 3 21 21 C 1.36926 * 120.63131 * 353.37588 * 20 2 1 22 22 H 1.08006 * 120.00125 * 29.03964 * 21 20 2 23 23 C 1.38815 * 120.00520 * 209.03497 * 21 20 2 24 24 N 1.31625 * 119.99187 * 15.01244 * 23 21 20 25 25 Si 1.86793 * 120.00463 * 195.01444 * 23 21 20 26 26 H 1.48497 * 109.46979 * 60.00216 * 25 23 21 27 27 H 1.48500 * 109.47050 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47109 * 299.99993 * 25 23 21 29 29 H 1.09006 * 109.46798 * 299.63994 * 1 2 3 30 30 H 1.08993 * 109.47243 * 59.63976 * 1 2 3 31 31 H 1.08997 * 109.46804 * 179.64608 * 1 2 3 32 32 H 1.09002 * 109.49968 * 65.62349 * 4 2 1 33 33 H 1.09006 * 109.50002 * 305.52841 * 4 2 1 34 34 H 0.96998 * 119.99735 * 334.92928 * 7 5 4 35 35 H 1.07992 * 122.90759 * 359.97438 * 11 10 8 36 36 H 1.08998 * 115.55062 * 154.02444 * 14 13 12 37 37 H 1.09000 * 117.49853 * 0.02562 * 15 14 13 38 38 H 1.08996 * 117.49962 * 145.02469 * 15 14 13 39 39 H 1.08999 * 117.50179 * 252.51271 * 16 15 14 40 40 H 1.08999 * 117.50115 * 107.48694 * 16 15 14 41 41 H 1.09003 * 109.49298 * 58.58551 * 18 5 4 42 42 H 1.08995 * 109.50038 * 178.65591 * 18 5 4 43 43 H 1.09003 * 109.58721 * 174.41780 * 19 18 5 44 44 H 1.09001 * 109.58864 * 294.70328 * 19 18 5 45 45 H 0.97006 * 119.99556 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 3.5675 -0.8479 -1.1702 6 1 4.0059 0.1476 -1.0993 7 7 4.0652 -1.5156 -2.3755 8 6 5.3290 -1.3008 -2.7917 9 8 6.0568 -0.5527 -2.1661 10 6 5.8271 -1.9689 -3.9987 11 6 5.1270 -2.8227 -4.7871 12 7 5.8007 -3.2811 -5.8122 13 6 7.0255 -2.8842 -5.9447 14 6 7.9513 -3.3074 -7.0560 15 6 7.3503 -4.1177 -8.2062 16 6 8.2635 -4.7996 -7.1856 17 16 7.4419 -1.8062 -4.6851 18 6 3.9570 -1.6656 0.0634 19 6 3.4652 -0.9469 1.3236 20 7 2.0226 -0.6995 1.1945 21 6 1.1539 -1.1127 2.1689 22 1 0.1361 -1.3673 1.9125 23 6 1.5812 -1.2044 3.4865 24 7 2.7046 -0.6262 3.8556 25 14 0.5622 -2.1483 4.7354 26 1 0.4326 -3.5624 4.3011 27 1 1.2313 -2.0973 6.0602 28 1 -0.7869 -1.5361 4.8377 29 1 -0.3633 0.5083 0.8933 30 1 -0.3633 0.5194 -0.8867 31 1 -0.3633 -1.0276 -0.0063 32 1 1.7660 -0.1667 -2.1368 33 1 1.6030 -1.7253 -1.2914 34 1 3.4852 -2.1122 -2.8740 35 1 4.1017 -3.0974 -4.5887 36 1 8.7478 -2.6037 -7.2979 37 1 6.2851 -4.3443 -8.1595 38 1 7.7511 -3.9470 -9.2053 39 1 9.2653 -5.0776 -7.5132 40 1 7.7993 -5.4751 -6.4671 41 1 3.4984 -2.6527 0.0051 42 1 5.0412 -1.7699 0.1033 43 1 3.6519 -1.5717 2.1971 44 1 3.9922 0.0010 1.4330 45 1 3.0031 -0.6900 4.7764 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947949562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:10 Heat of formation + Delta-G solvation = 33.177921 kcal Electronic energy + Delta-G solvation = -26097.125481 eV Core-core repulsion = 22434.863320 eV Total energy + Delta-G solvation = -3662.262160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44590 -40.60193 -39.23016 -37.79631 -36.17756 -34.27360 -33.20333 -31.96066 -30.66774 -28.06865 -27.58286 -26.59223 -24.21480 -23.77428 -23.24781 -22.94124 -21.79717 -21.23815 -20.20865 -19.30659 -18.40962 -18.04015 -17.30963 -16.88299 -16.52717 -16.36898 -15.79731 -15.66203 -15.52895 -15.33425 -15.14663 -14.90774 -14.81179 -14.52364 -14.28993 -13.33542 -13.20558 -12.95409 -12.74508 -12.69488 -12.63974 -12.60597 -12.36573 -12.36361 -12.12580 -11.92480 -11.86475 -11.74549 -11.68026 -11.53053 -11.41663 -11.12121 -10.65460 -10.57854 -10.53691 -10.15440 -9.81947 -8.65121 -7.83109 -5.29557 -0.86771 0.03386 0.60986 1.30032 1.47943 1.50231 1.56440 2.05394 2.11488 2.53209 2.82912 3.02023 3.33036 3.57112 3.66987 3.72587 3.85767 3.88260 4.03791 4.05587 4.11102 4.24747 4.29960 4.37914 4.60558 4.70078 4.74441 4.79962 4.81110 4.87408 4.94773 4.96455 5.05484 5.07254 5.14990 5.15395 5.30288 5.37918 5.42636 5.52657 5.56176 5.71322 5.73382 6.39415 6.43514 6.50177 7.07325 7.17402 7.89287 8.42028 9.24188 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.002256 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.866362 B =12406.786972 C =12570.581729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.159 3.841 3 H 0.012 0.988 4 C -0.118 4.118 5 C 0.164 3.836 6 H 0.059 0.941 7 N -0.695 5.695 8 C 0.592 3.408 9 O -0.582 6.582 10 C -0.325 4.325 11 C 0.112 3.888 12 N -0.497 5.497 13 C 0.084 3.916 14 C -0.120 4.120 15 C -0.142 4.142 16 C -0.146 4.146 17 S 0.228 5.772 18 C -0.131 4.131 19 C 0.183 3.817 20 N -0.603 5.603 21 C -0.247 4.247 22 H 0.081 0.919 23 C -0.059 4.059 24 N -0.942 5.942 25 Si 0.965 3.035 26 H -0.277 1.277 27 H -0.301 1.301 28 H -0.273 1.273 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.415 0.585 35 H 0.207 0.793 36 H 0.151 0.849 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.057 0.943 44 H -0.013 1.013 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.537 -7.388 -26.657 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.029 0.971 4 C -0.157 4.157 5 C 0.059 3.941 6 H 0.077 0.923 7 N -0.346 5.346 8 C 0.378 3.622 9 O -0.463 6.463 10 C -0.450 4.450 11 C -0.047 4.047 12 N -0.212 5.212 13 C -0.189 4.189 14 C -0.141 4.141 15 C -0.181 4.181 16 C -0.185 4.185 17 S 0.489 5.511 18 C -0.171 4.171 19 C 0.057 3.943 20 N -0.326 5.326 21 C -0.377 4.377 22 H 0.099 0.901 23 C -0.254 4.254 24 N -0.589 5.589 25 Si 0.794 3.206 26 H -0.203 1.203 27 H -0.228 1.228 28 H -0.199 1.199 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.252 0.748 35 H 0.224 0.776 36 H 0.169 0.831 37 H 0.113 0.887 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.005 0.995 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.818 -6.596 -26.165 28.388 hybrid contribution -1.302 -0.518 1.622 2.143 sum 7.516 -7.114 -24.543 26.636 Atomic orbital electron populations 1.21710 0.93733 1.01791 1.01172 1.20651 0.94810 0.92899 0.86406 0.97079 1.22202 0.91977 1.02530 0.99016 1.20747 0.95264 0.95236 0.82840 0.92275 1.45762 1.12390 1.48295 1.28139 1.17028 0.82225 0.80293 0.82634 1.90842 1.57426 1.39587 1.58455 1.25590 1.01063 1.12623 1.05704 1.22538 1.01908 0.92132 0.88121 1.66145 1.06141 1.26918 1.21954 1.27087 0.94460 0.97451 0.99949 1.20886 1.00272 0.97479 0.95476 1.23094 1.00190 1.00437 0.94347 1.23154 1.02560 0.90725 1.02085 1.84100 1.09413 1.40322 1.17306 1.22322 0.98992 0.99695 0.96105 1.20446 0.83691 0.95477 0.94736 1.44423 1.02575 1.65581 1.20063 1.19520 0.95335 1.36275 0.86613 0.90111 1.25893 0.99120 1.01273 0.99082 1.70195 1.25307 1.46620 1.16730 0.85370 0.78309 0.79057 0.77905 1.20347 1.22769 1.19902 0.94169 0.90395 0.92484 0.89034 0.90274 0.74763 0.77639 0.83124 0.88712 0.85630 0.85292 0.89475 0.91821 0.93847 0.92503 0.99495 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 7.94 71.98 0.57 -3.72 16 2 C 0.16 6.22 3.50 44.97 0.16 6.38 16 3 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 4 C -0.12 -3.55 4.84 30.67 0.15 -3.40 16 5 C 0.16 5.55 2.42 45.02 0.11 5.66 16 6 H 0.06 2.35 7.58 -2.38 -0.02 2.33 16 7 N -0.70 -18.61 5.06 -446.37 -2.26 -20.87 16 8 C 0.59 18.18 7.75 86.45 0.67 18.85 16 9 O -0.58 -23.23 16.63 -4.30 -0.07 -23.31 16 10 C -0.33 -7.92 6.48 23.88 0.15 -7.77 16 11 C 0.11 2.19 10.93 84.23 0.92 3.11 16 12 N -0.50 -9.94 9.98 -190.30 -1.90 -11.83 16 13 C 0.08 1.50 6.96 88.46 0.62 2.11 16 14 C -0.12 -1.37 6.28 -11.54 -0.07 -1.44 16 15 C -0.14 -1.32 10.12 30.59 0.31 -1.01 16 16 C -0.15 -1.33 10.23 30.59 0.31 -1.02 16 17 S 0.23 4.79 23.01 -56.49 -1.30 3.49 16 18 C -0.13 -5.29 5.65 30.67 0.17 -5.11 16 19 C 0.18 9.25 5.29 86.36 0.46 9.71 16 20 N -0.60 -29.66 2.99 -675.21 -2.02 -31.68 16 21 C -0.25 -13.13 8.60 84.04 0.72 -12.41 16 22 H 0.08 4.05 6.21 -2.91 -0.02 4.03 16 23 C -0.06 -3.31 4.96 84.86 0.42 -2.89 16 24 N -0.94 -56.99 11.14 21.65 0.24 -56.74 16 25 Si 0.97 44.94 29.58 68.60 2.03 46.97 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 27 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 29 H 0.04 1.53 7.62 -2.38 -0.02 1.51 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 1.89 7.45 -2.39 -0.02 1.88 16 32 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.41 7.83 7.31 -92.71 -0.68 7.16 16 35 H 0.21 2.67 7.15 -2.91 -0.02 2.65 16 36 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.21 7.84 -2.39 -0.02 1.19 16 38 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 3.24 6.06 -2.39 -0.01 3.23 16 44 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 45 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 Total: -1.00 -73.17 376.73 0.73 -72.45 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.33 Total: 14.46 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 5.67 Total: 7.06 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -5.94 Total: -121.13 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.07 Total: -23.31 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.30 Total: 3.49 kcal Total: -73.17 0.73 -72.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947949562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.624 kcal (2) G-P(sol) polarization free energy of solvation -73.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds