Wall clock time and date at job start Tue Mar 31 2020 19:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.70816 * 2 1 4 4 C 1.53194 * 109.58669 * 120.35936 * 2 1 3 5 5 C 1.53035 * 109.31316 * 174.41689 * 4 2 1 6 6 H 1.09000 * 109.46238 * 178.62895 * 5 4 2 7 7 N 1.46499 * 109.46187 * 58.65294 * 5 4 2 8 8 C 1.34779 * 120.00315 * 154.99708 * 7 5 4 9 9 O 1.21633 * 119.99887 * 0.02562 * 8 7 5 10 10 C 1.47266 * 120.00053 * 180.02562 * 8 7 5 11 11 C 1.35210 * 123.13856 * 180.02562 * 10 8 7 12 12 S 1.70939 * 108.82497 * 179.97438 * 11 10 8 13 13 C 1.70774 * 91.13065 * 359.97438 * 12 11 10 14 14 C 1.50696 * 124.72201 * 179.97438 * 13 12 11 15 15 C 1.53001 * 117.49698 * 8.64811 * 14 13 12 16 16 C 1.52999 * 60.00166 * 252.50911 * 15 14 13 17 17 N 1.28650 * 110.55629 * 0.02562 * 13 12 11 18 18 C 1.53042 * 109.54010 * 298.63376 * 5 4 2 19 19 C 1.53191 * 109.31156 * 61.36323 * 18 5 4 20 20 N 1.46921 * 108.77613 * 305.36661 * 19 18 5 21 21 C 1.36936 * 120.62988 * 233.62457 * 20 19 18 22 22 H 1.08003 * 119.99793 * 150.14429 * 21 20 19 23 23 C 1.38807 * 120.00393 * 330.14885 * 21 20 19 24 24 N 1.31621 * 120.00054 * 344.49938 * 23 21 20 25 25 Si 1.86804 * 120.00250 * 164.49679 * 23 21 20 26 26 H 1.48501 * 109.47016 * 89.99923 * 25 23 21 27 27 H 1.48500 * 109.47406 * 209.99938 * 25 23 21 28 28 H 1.48498 * 109.46984 * 329.99981 * 25 23 21 29 29 H 1.09006 * 109.46540 * 299.64317 * 1 2 3 30 30 H 1.09003 * 109.46961 * 59.63668 * 1 2 3 31 31 H 1.08994 * 109.47679 * 179.64178 * 1 2 3 32 32 H 1.08997 * 109.49731 * 54.46704 * 4 2 1 33 33 H 1.09000 * 109.52264 * 294.38785 * 4 2 1 34 34 H 0.96996 * 119.99950 * 335.00289 * 7 5 4 35 35 H 1.07995 * 125.58714 * 0.24412 * 11 10 8 36 36 H 1.09000 * 115.54971 * 154.35482 * 14 13 12 37 37 H 1.09003 * 117.50050 * 359.97438 * 15 14 13 38 38 H 1.09000 * 117.50200 * 145.02101 * 15 14 13 39 39 H 1.08997 * 117.50404 * 252.51146 * 16 15 14 40 40 H 1.08995 * 117.49702 * 107.48846 * 16 15 14 41 41 H 1.08997 * 109.49808 * 181.31463 * 18 5 4 42 42 H 1.09002 * 109.49568 * 301.41462 * 18 5 4 43 43 H 1.09006 * 109.58813 * 185.57534 * 19 18 5 44 44 H 1.09001 * 109.70545 * 65.22701 * 19 18 5 45 45 H 0.96996 * 120.00270 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0436 -0.7295 1.2454 5 6 3.5674 -0.8482 1.1700 6 1 3.9378 -1.3453 2.0666 7 7 4.1571 0.4895 1.0748 8 6 5.4213 0.7001 1.4922 9 8 6.0727 -0.2207 1.9474 10 6 6.0138 2.0449 1.3969 11 6 7.2745 2.3271 1.7957 12 16 7.5816 3.9861 1.5213 13 6 6.0104 4.2071 0.8896 14 6 5.4655 5.5175 0.3828 15 6 6.4449 6.6854 0.2492 16 6 5.4026 6.6854 1.3693 17 7 5.3563 3.0995 0.9077 18 6 3.9568 -1.6659 -0.0636 19 6 3.4649 -0.9471 -1.3238 20 7 2.0225 -0.6996 -1.1945 21 6 1.1535 -1.1134 -2.1686 22 1 0.1397 -1.3808 -1.9097 23 6 1.5757 -1.1893 -3.4887 24 7 2.6862 -0.5883 -3.8601 25 14 0.5678 -2.1445 -4.7383 26 1 -0.4263 -1.2390 -5.3685 27 1 1.4678 -2.6954 -5.7832 28 1 -0.1393 -3.2582 -4.0566 29 1 -0.3632 0.5083 0.8932 30 1 -0.3633 0.5195 -0.8867 31 1 -0.3634 -1.0276 -0.0064 32 1 1.6029 -1.7254 1.2913 33 1 1.7660 -0.1674 2.1371 34 1 3.6377 1.2237 0.7115 35 1 7.9744 1.6193 2.2146 36 1 4.6694 5.4407 -0.3577 37 1 7.4832 6.5061 0.5284 38 1 6.2932 7.3773 -0.5793 39 1 4.5652 7.3770 1.2776 40 1 5.7552 6.5058 2.3849 41 1 5.0411 -1.7698 -0.1038 42 1 3.4981 -2.6530 -0.0054 43 1 3.6517 -1.5719 -2.1973 44 1 3.9900 0.0017 -1.4344 45 1 2.9811 -0.6410 -4.7827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948089833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:25 Heat of formation + Delta-G solvation = 53.421087 kcal Electronic energy + Delta-G solvation = -27064.363914 eV Core-core repulsion = 23402.979563 eV Total energy + Delta-G solvation = -3661.384351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50865 -39.11226 -37.69696 -37.09285 -34.25807 -32.29661 -31.27171 -30.54456 -29.58153 -26.49099 -26.07290 -24.95456 -23.81675 -22.80899 -21.94457 -21.07384 -20.57525 -19.88604 -18.77561 -18.32607 -16.65077 -16.41433 -16.17613 -15.41183 -15.30234 -15.04752 -14.64993 -14.21097 -14.10585 -13.82052 -13.70101 -13.53631 -13.05831 -12.72968 -12.55944 -12.42124 -12.16626 -11.86456 -11.77019 -11.38633 -11.18462 -11.14994 -10.97599 -10.91732 -10.64414 -10.60167 -10.38017 -10.11649 -10.03906 -9.96949 -9.78469 -9.69565 -9.63261 -9.25464 -8.94836 -8.52225 -8.41789 -6.57794 -5.73789 -3.18020 0.41551 1.06567 1.47752 1.96936 3.35433 3.38975 3.46421 3.48185 3.53146 3.60713 3.78734 4.41227 4.51828 4.56492 4.65902 4.94371 5.12372 5.22857 5.24848 5.36783 5.39714 5.43894 5.48106 5.65878 5.67475 5.69388 5.72069 5.84910 6.03478 6.17024 6.28830 6.35352 6.41576 6.48936 6.61328 6.66291 6.80727 6.99299 7.06084 7.10655 7.36963 7.42717 7.73217 7.85708 7.93863 8.49846 8.50454 9.25944 9.89769 10.47342 11.34444 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.003305 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.384852 B = 8471.240563 C = 9216.543831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.167 3.833 3 H 0.022 0.978 4 C -0.138 4.138 5 C 0.152 3.848 6 H 0.074 0.926 7 N -0.691 5.691 8 C 0.590 3.410 9 O -0.545 6.545 10 C 0.022 3.978 11 C -0.231 4.231 12 S 0.195 5.805 13 C 0.061 3.939 14 C -0.085 4.085 15 C -0.169 4.169 16 C -0.160 4.160 17 N -0.435 5.435 18 C -0.153 4.153 19 C 0.176 3.824 20 N -0.586 5.586 21 C -0.250 4.250 22 H 0.069 0.931 23 C 0.004 3.996 24 N -0.902 5.902 25 Si 0.899 3.101 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.411 0.589 35 H 0.189 0.811 36 H 0.138 0.862 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.018 0.982 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.123 13.527 12.222 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.039 0.961 4 C -0.178 4.178 5 C 0.048 3.952 6 H 0.092 0.908 7 N -0.341 5.341 8 C 0.373 3.627 9 O -0.424 6.424 10 C -0.113 4.113 11 C -0.373 4.373 12 S 0.453 5.547 13 C -0.219 4.219 14 C -0.106 4.106 15 C -0.207 4.207 16 C -0.198 4.198 17 N -0.150 5.150 18 C -0.193 4.193 19 C 0.050 3.950 20 N -0.310 5.310 21 C -0.380 4.380 22 H 0.087 0.913 23 C -0.195 4.195 24 N -0.546 5.546 25 Si 0.729 3.271 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.205 1.205 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.248 0.752 35 H 0.206 0.794 36 H 0.155 0.845 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.037 0.963 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.901 13.438 12.320 20.288 hybrid contribution -1.021 -1.146 -0.955 1.808 sum 7.880 12.293 11.365 18.503 Atomic orbital electron populations 1.21792 0.95842 1.01483 1.00211 1.20393 0.93152 0.93249 0.87186 0.96073 1.22361 0.93759 1.02344 0.99330 1.20964 0.93199 0.82105 0.98891 0.90838 1.46001 1.13383 1.13023 1.61739 1.17030 0.82150 0.85273 0.78241 1.90776 1.61491 1.42823 1.47305 1.20539 0.92102 0.94728 1.03949 1.26582 1.01295 1.01602 1.07810 1.82604 1.15533 1.01688 1.54895 1.26179 0.94818 0.97255 1.03612 1.20437 1.03202 0.83352 1.03633 1.23154 0.95825 0.99889 1.01859 1.23147 1.01911 0.99343 0.95449 1.66830 1.34807 0.97783 1.15543 1.22560 0.99898 0.99416 0.97471 1.20687 0.83235 0.97117 0.93922 1.44113 1.02937 1.64965 1.18936 1.19145 0.95167 1.37603 0.86092 0.91348 1.25089 0.97849 0.99595 0.96972 1.70031 1.24105 1.43895 1.16571 0.86360 0.79401 0.80021 0.81348 1.21483 1.21689 1.20518 0.94344 0.91972 0.92685 0.90565 0.92590 0.75177 0.79371 0.84474 0.88384 0.87100 0.87344 0.88282 0.92820 0.91665 0.89805 0.96346 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.95 37.16 0.30 -2.23 16 2 C 0.17 3.41 3.20 -67.60 -0.22 3.19 16 3 H 0.02 0.46 6.64 -51.93 -0.34 0.11 16 4 C -0.14 -2.42 5.07 -26.61 -0.13 -2.56 16 5 C 0.15 2.81 2.78 -67.89 -0.19 2.62 16 6 H 0.07 1.33 7.58 -51.93 -0.39 0.94 16 7 N -0.69 -12.64 4.27 -54.89 -0.23 -12.88 16 8 C 0.59 10.88 7.76 -12.59 -0.10 10.78 16 9 O -0.55 -11.08 16.38 5.25 0.09 -10.99 16 10 C 0.02 0.35 6.70 -84.53 -0.57 -0.22 16 11 C -0.23 -3.00 10.62 29.65 0.31 -2.69 16 12 S 0.20 1.90 21.65 -107.50 -2.33 -0.43 16 13 C 0.06 0.74 6.99 -13.61 -0.10 0.64 16 14 C -0.08 -0.80 6.33 -91.77 -0.58 -1.38 16 15 C -0.17 -1.11 10.01 -26.73 -0.27 -1.38 16 16 C -0.16 -1.09 10.23 -26.73 -0.27 -1.36 16 17 N -0.44 -6.72 10.12 -8.51 -0.09 -6.80 16 18 C -0.15 -3.17 5.77 -26.61 -0.15 -3.33 16 19 C 0.18 4.30 5.02 -3.71 -0.02 4.28 16 20 N -0.59 -14.37 2.99 -164.77 -0.49 -14.86 16 21 C -0.25 -6.70 8.58 -15.06 -0.13 -6.83 16 22 H 0.07 1.78 6.23 -52.48 -0.33 1.46 16 23 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 24 N -0.90 -26.32 11.23 55.49 0.62 -25.69 16 25 Si 0.90 21.71 29.58 -169.99 -5.03 16.69 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.25 7.67 -51.93 -0.40 0.85 16 31 H 0.05 1.03 7.40 -51.93 -0.38 0.65 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.41 7.62 6.39 -40.82 -0.26 7.36 16 35 H 0.19 2.20 8.03 -52.49 -0.42 1.78 16 36 H 0.14 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.10 0.58 7.21 -51.93 -0.37 0.21 16 38 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.08 2.31 6.15 -51.93 -0.32 1.99 16 44 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -31.78 372.10 -10.62 -42.39 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.56 Total: 7.40 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -2.20 Total: -0.44 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.19 Total: -60.23 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.69 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.33 Total: -0.43 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.78 -10.62 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948089833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.813 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds