Wall clock time and date at job start Tue Mar 31 2020 19:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.44800 * 2 1 4 4 C 1.53039 * 109.46001 * 119.96332 * 2 1 3 5 5 C 1.53191 * 109.31133 * 181.38514 * 4 2 1 6 6 N 1.46929 * 108.77674 * 305.36548 * 5 4 2 7 7 C 1.36936 * 120.63171 * 233.63107 * 6 5 4 8 8 H 1.08001 * 120.00245 * 27.66666 * 7 6 5 9 9 C 1.38810 * 119.99976 * 207.66544 * 7 6 5 10 10 N 1.31622 * 120.00198 * 17.36112 * 9 7 6 11 11 Si 1.86800 * 119.99983 * 197.36125 * 9 7 6 12 12 H 1.48504 * 109.47185 * 59.99875 * 11 9 7 13 13 H 1.48498 * 109.47027 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47228 * 300.00353 * 11 9 7 15 15 C 1.46929 * 118.73674 * 53.60926 * 6 5 4 16 16 C 1.53039 * 109.45767 * 240.03334 * 2 1 3 17 17 H 1.08999 * 109.52830 * 58.65007 * 16 2 1 18 18 N 1.46497 * 109.49953 * 298.56188 * 16 2 1 19 19 C 1.34780 * 120.00231 * 155.43545 * 18 16 2 20 20 O 1.21633 * 119.99652 * 359.73120 * 19 18 16 21 21 C 1.47262 * 120.00046 * 179.72821 * 19 18 16 22 22 N 1.33556 * 123.14240 * 359.70676 * 21 19 18 23 23 C 1.28650 * 115.76460 * 179.82844 * 22 21 19 24 24 S 1.70766 * 110.55966 * 0.42514 * 23 22 21 25 25 C 1.35205 * 123.13825 * 180.02562 * 21 19 18 26 26 C 1.50704 * 125.58986 * 359.96643 * 25 21 19 27 27 C 1.52999 * 117.49920 * 188.62102 * 26 25 21 28 28 C 1.52997 * 117.50099 * 119.99560 * 26 25 21 29 29 H 1.09000 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47300 * 299.97072 * 1 2 3 31 31 H 1.09006 * 109.47160 * 59.96500 * 1 2 3 32 32 H 1.09005 * 109.49586 * 61.43595 * 4 2 1 33 33 H 1.08992 * 109.52564 * 301.35174 * 4 2 1 34 34 H 1.08996 * 109.58768 * 185.57735 * 5 4 2 35 35 H 1.08999 * 109.58750 * 65.15298 * 5 4 2 36 36 H 0.96995 * 120.00184 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.58285 * 186.60266 * 15 6 5 38 38 H 1.08990 * 109.70301 * 66.25204 * 15 6 5 39 39 H 0.96996 * 120.00058 * 335.16849 * 18 16 2 40 40 H 1.08005 * 124.71767 * 180.15483 * 23 22 21 41 41 H 1.09004 * 115.54612 * 334.32937 * 26 25 21 42 42 H 1.08998 * 117.50034 * 359.97438 * 27 26 25 43 43 H 1.09005 * 117.49530 * 145.01626 * 27 26 25 44 44 H 1.08999 * 117.50064 * 214.97608 * 28 26 25 45 45 H 1.09001 * 117.49867 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2488 0.0000 7 6 4.9758 -2.2739 0.0000 8 1 5.0086 -2.9662 0.8283 9 6 5.8539 -2.4233 -1.0646 10 7 6.0602 -1.4216 -1.8931 11 14 6.7428 -4.0461 -1.3214 12 1 5.7473 -5.1294 -1.5228 13 1 7.6169 -3.9477 -2.5179 14 1 7.5713 -4.3510 -0.1274 15 6 3.5713 -0.6885 -1.2643 16 6 2.0398 -0.7208 -1.2501 17 1 1.6572 -0.2213 -2.1401 18 7 1.5802 -2.1117 -1.2342 19 6 1.4600 -2.7950 -2.3897 20 8 1.7284 -2.2552 -3.4462 21 6 1.0036 -4.1950 -2.3732 22 7 0.6979 -4.8502 -1.2503 23 6 0.3110 -6.0678 -1.4009 24 16 0.3162 -6.4986 -3.0534 25 6 0.8610 -4.9392 -3.4930 26 6 1.1370 -4.4706 -4.8986 27 6 0.7236 -5.3951 -6.0454 28 6 2.2035 -5.2224 -5.6973 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5144 -0.8897 32 1 1.6978 -1.7556 1.2383 33 1 1.6573 -0.2212 2.1401 34 1 3.9417 -1.2844 2.0984 35 1 3.9143 0.3410 1.3673 36 1 6.6741 -1.5259 -2.6368 37 1 3.9417 -1.2845 -2.0984 38 1 3.9143 0.3406 -1.3700 39 1 1.3660 -2.5421 -0.3918 40 1 0.0270 -6.7273 -0.5941 41 1 1.0503 -3.3963 -5.0614 42 1 0.2525 -6.3424 -5.7834 43 1 0.3648 -4.9291 -6.9631 44 1 2.8182 -4.6429 -6.3861 45 1 2.7059 -6.0557 -5.2061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968328251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:52 Heat of formation + Delta-G solvation = 53.806577 kcal Electronic energy + Delta-G solvation = -28105.170222 eV Core-core repulsion = 24443.802587 eV Total energy + Delta-G solvation = -3661.367635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.36593 -38.87078 -37.34046 -37.04666 -34.07058 -32.69869 -30.96975 -30.43172 -29.16483 -27.33126 -25.86300 -24.01625 -22.86854 -22.42836 -22.05774 -21.65709 -21.02812 -19.54695 -18.63239 -18.05077 -16.72726 -16.61492 -15.74579 -15.24065 -14.96133 -14.61547 -14.54825 -14.14800 -13.90491 -13.83908 -13.55622 -13.44169 -13.15750 -12.78167 -12.54135 -12.13683 -11.99280 -11.83873 -11.62034 -11.52368 -11.33181 -11.06140 -11.00457 -10.86665 -10.68484 -10.60417 -10.44839 -10.18736 -9.86208 -9.77948 -9.63120 -9.45310 -9.29458 -9.26874 -8.76827 -8.39791 -8.22826 -6.58661 -5.71180 -3.12818 0.58405 1.22610 1.64223 2.24694 3.41043 3.47209 3.48379 3.72226 3.78657 4.02325 4.26811 4.53532 4.55265 4.80469 4.97062 5.14931 5.24678 5.30319 5.32233 5.40545 5.47891 5.52270 5.60259 5.62658 5.84188 5.95005 5.97927 6.00931 6.03705 6.09175 6.21392 6.27756 6.35690 6.42560 6.50740 6.60939 6.73305 6.81339 6.95167 7.08218 7.40851 7.51008 7.73534 7.86517 8.23401 8.52654 8.84121 9.27686 9.92037 10.47612 11.36813 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009817 B = 0.005448 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.462339 B = 5138.597819 C = 6434.938194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.130 4.130 5 C 0.143 3.857 6 N -0.586 5.586 7 C -0.249 4.249 8 H 0.062 0.938 9 C 0.007 3.993 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.283 1.283 15 C 0.160 3.840 16 C 0.124 3.876 17 H 0.076 0.924 18 N -0.677 5.677 19 C 0.592 3.408 20 O -0.539 6.539 21 C 0.012 3.988 22 N -0.430 5.430 23 C -0.008 4.008 24 S 0.179 5.821 25 C -0.151 4.151 26 C -0.082 4.082 27 C -0.180 4.180 28 C -0.159 4.159 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.018 0.982 36 H 0.254 0.746 37 H 0.097 0.903 38 H 0.026 0.974 39 H 0.404 0.596 40 H 0.202 0.798 41 H 0.150 0.850 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.079 -7.393 -2.147 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.170 4.170 5 C 0.017 3.983 6 N -0.309 5.309 7 C -0.379 4.379 8 H 0.080 0.920 9 C -0.192 4.192 10 N -0.542 5.542 11 Si 0.726 3.274 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.210 1.210 15 C 0.034 3.966 16 C 0.018 3.982 17 H 0.094 0.906 18 N -0.327 5.327 19 C 0.375 3.625 20 O -0.417 6.417 21 C -0.122 4.122 22 N -0.144 5.144 23 C -0.308 4.308 24 S 0.435 5.565 25 C -0.274 4.274 26 C -0.103 4.103 27 C -0.218 4.218 28 C -0.197 4.197 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.043 0.957 39 H 0.240 0.760 40 H 0.219 0.781 41 H 0.168 0.832 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.961 -7.641 -2.921 17.051 hybrid contribution 0.795 -0.302 0.495 0.984 sum -14.165 -7.943 -2.426 16.421 Atomic orbital electron populations 1.21851 0.96021 1.01447 1.00861 1.21303 0.94603 0.99802 0.95509 0.90407 1.22089 0.99212 0.99621 0.96028 1.20925 0.90716 0.96451 0.90233 1.43947 1.48209 1.39535 0.99167 1.19027 1.09774 1.03002 1.06092 0.92041 1.24957 0.97255 0.97090 0.99906 1.69988 1.37541 1.28917 1.17786 0.86471 0.79252 0.84400 0.77292 1.21310 1.21616 1.20969 1.21202 0.86592 0.97778 0.91064 1.21853 0.99038 0.80310 0.96971 0.90571 1.45650 1.65065 1.13583 1.08374 1.16857 0.77866 0.83131 0.84624 1.90711 1.51588 1.68758 1.30690 1.20517 1.06943 0.97870 0.86885 1.66952 1.11220 1.06657 1.29553 1.28269 1.05881 0.96495 1.00116 1.82593 1.59359 1.10946 1.03650 1.24753 1.05227 0.97631 0.99811 1.20694 1.04733 1.00422 0.84408 1.23144 0.98433 1.00727 0.99462 1.23060 0.91604 1.02490 1.02559 0.92978 0.93162 0.93159 0.92547 0.92797 0.92858 0.96433 0.93640 0.88449 0.95651 0.75999 0.78100 0.83242 0.88901 0.87784 0.87621 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.05 37.16 0.34 -1.66 16 2 C -0.09 -1.53 2.48 -90.58 -0.22 -1.76 16 3 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 4 C -0.13 -2.19 5.20 -26.61 -0.14 -2.32 16 5 C 0.14 2.96 6.52 -3.71 -0.02 2.94 16 6 N -0.59 -14.63 2.91 -172.32 -0.50 -15.14 16 7 C -0.25 -6.96 9.59 -15.06 -0.14 -7.10 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 9 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 10 N -0.90 -26.96 11.19 55.49 0.62 -26.34 16 11 Si 0.90 22.79 29.59 -169.99 -5.03 17.76 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 15 C 0.16 3.94 4.91 -3.71 -0.02 3.92 16 16 C 0.12 2.46 2.24 -67.81 -0.15 2.31 16 17 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 18 N -0.68 -13.32 4.25 -54.81 -0.23 -13.55 16 19 C 0.59 12.23 7.76 -12.59 -0.10 12.13 16 20 O -0.54 -12.14 13.83 5.25 0.07 -12.07 16 21 C 0.01 0.22 6.70 -84.53 -0.57 -0.35 16 22 N -0.43 -7.03 10.12 -12.36 -0.13 -7.15 16 23 C -0.01 -0.10 12.17 51.43 0.63 0.53 16 24 S 0.18 2.01 21.77 -107.50 -2.34 -0.33 16 25 C -0.15 -2.35 6.04 -35.39 -0.21 -2.56 16 26 C -0.08 -1.22 5.40 -91.77 -0.50 -1.71 16 27 C -0.18 -1.97 10.03 -26.73 -0.27 -2.23 16 28 C -0.16 -2.09 10.23 -26.73 -0.27 -2.36 16 29 H 0.05 0.74 7.54 -51.93 -0.39 0.34 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.98 6.40 -51.93 -0.33 0.64 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.10 2.81 6.03 -51.93 -0.31 2.49 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.40 7.68 6.15 -40.82 -0.25 7.43 16 40 H 0.20 1.64 8.06 -52.48 -0.42 1.21 16 41 H 0.15 2.52 6.17 -51.93 -0.32 2.20 16 42 H 0.09 0.89 7.28 -51.93 -0.38 0.51 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -32.57 370.82 -10.26 -42.83 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.57 Total: 8.53 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.74 Total: -0.12 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -0.24 Total: -62.18 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.76 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.34 Total: -0.33 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.57 -10.26 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968328251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.632 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds