Wall clock time and date at job start Tue Mar 31 2020 19:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.45600 * 2 1 4 4 C 1.53043 * 109.45753 * 119.97062 * 2 1 3 5 5 C 1.53192 * 109.31131 * 181.38377 * 4 2 1 6 6 N 1.46926 * 108.77661 * 305.36877 * 5 4 2 7 7 C 1.36937 * 120.62735 * 233.62660 * 6 5 4 8 8 H 1.08001 * 119.99496 * 152.62489 * 7 6 5 9 9 C 1.38807 * 120.00362 * 332.62217 * 7 6 5 10 10 N 1.31621 * 119.99997 * 159.34012 * 9 7 6 11 11 Si 1.86799 * 119.99917 * 339.34676 * 9 7 6 12 12 H 1.48500 * 109.47336 * 92.96220 * 11 9 7 13 13 H 1.48501 * 109.47170 * 212.96067 * 11 9 7 14 14 H 1.48500 * 109.47394 * 332.95853 * 11 9 7 15 15 C 1.46925 * 118.74063 * 53.60898 * 6 5 4 16 16 C 1.53037 * 109.46234 * 240.02686 * 2 1 3 17 17 H 1.09005 * 109.49827 * 298.56847 * 16 2 1 18 18 N 1.46499 * 109.49884 * 58.66270 * 16 2 1 19 19 C 1.34780 * 120.00189 * 205.00279 * 18 16 2 20 20 O 1.21631 * 120.00175 * 0.02562 * 19 18 16 21 21 C 1.47265 * 119.99761 * 180.02562 * 19 18 16 22 22 N 1.33555 * 123.14559 * 0.02562 * 21 19 18 23 23 C 1.28650 * 115.76741 * 179.97438 * 22 21 19 24 24 S 1.70763 * 110.56248 * 359.97438 * 23 22 21 25 25 C 1.35212 * 123.13985 * 179.72917 * 21 19 18 26 26 C 1.50706 * 125.58520 * 0.02600 * 25 21 19 27 27 C 1.52991 * 117.49894 * 188.62326 * 26 25 21 28 28 C 1.52995 * 60.00086 * 252.50867 * 27 26 25 29 29 H 1.08994 * 109.47379 * 300.00166 * 1 2 3 30 30 H 1.09001 * 109.46663 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46462 * 60.00268 * 1 2 3 32 32 H 1.08993 * 109.50015 * 301.34089 * 4 2 1 33 33 H 1.08999 * 109.49258 * 61.43604 * 4 2 1 34 34 H 1.09007 * 109.58424 * 65.15631 * 5 4 2 35 35 H 1.08998 * 109.58768 * 185.43380 * 5 4 2 36 36 H 0.97001 * 119.99409 * 180.02562 * 10 9 7 37 37 H 1.08995 * 109.58947 * 66.17398 * 15 6 5 38 38 H 1.08999 * 109.58561 * 186.46315 * 15 6 5 39 39 H 0.97005 * 120.00260 * 24.99862 * 18 16 2 40 40 H 1.08005 * 124.71628 * 179.97438 * 23 22 21 41 41 H 1.08999 * 115.54707 * 334.32567 * 26 25 21 42 42 H 1.09002 * 117.50146 * 359.97438 * 27 26 25 43 43 H 1.09000 * 117.50163 * 145.01505 * 27 26 25 44 44 H 1.09000 * 117.49920 * 252.51434 * 28 27 26 45 45 H 1.08996 * 117.50063 * 107.48879 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 1.2501 5 6 3.5714 -0.6887 1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9758 -2.2740 -0.0001 8 1 5.0120 -2.9631 -0.8309 9 6 5.8496 -2.4273 1.0674 10 7 6.4254 -3.5908 1.2847 11 14 6.2083 -0.9825 2.1958 12 1 5.2798 -1.0166 3.3542 13 1 7.6089 -1.0694 2.6814 14 1 6.0213 0.2873 1.4488 15 6 3.5715 -0.6884 -1.2643 16 6 2.0400 -0.7209 -1.2500 17 1 1.6979 -1.7558 -1.2381 18 7 1.5257 -0.0490 -2.4459 19 6 1.3973 -0.7327 -3.6003 20 8 1.7078 -1.9077 -3.6491 21 6 0.8808 -0.0571 -4.8026 22 7 0.5220 1.2292 -4.8201 23 6 0.0902 1.6741 -5.9473 24 16 0.1077 0.4388 -7.1261 25 6 0.7312 -0.6796 -5.9935 26 6 1.0583 -2.1234 -6.2756 27 6 1.0103 -2.5870 -7.7328 28 6 -0.0810 -3.0255 -6.7542 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 -0.8901 32 1 1.6572 -0.2210 2.1398 33 1 1.6978 -1.7557 1.2381 34 1 3.9143 0.3408 1.3675 35 1 3.9416 -1.2827 2.0999 36 1 7.0358 -3.6979 2.0310 37 1 3.9143 0.3411 -1.3673 38 1 3.9439 -1.2828 -2.0986 39 1 1.2776 0.8880 -2.4070 40 1 -0.2377 2.6880 -6.1236 41 1 1.8156 -2.5686 -5.6303 42 1 0.7416 -1.8478 -8.4875 43 1 1.7361 -3.3372 -8.0466 44 1 -0.0731 -4.0642 -6.4240 45 1 -1.0671 -2.5747 -6.8650 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968328252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:54 Heat of formation + Delta-G solvation = 33.562605 kcal Electronic energy + Delta-G solvation = -27103.234415 eV Core-core repulsion = 23440.988935 eV Total energy + Delta-G solvation = -3662.245479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.75123 -40.36148 -39.04223 -38.22126 -36.29941 -34.56775 -33.44178 -31.70230 -30.86510 -29.25842 -27.21590 -25.66084 -24.61353 -23.47762 -23.19035 -22.95342 -22.84757 -21.38534 -20.52453 -19.19115 -18.80175 -17.97542 -17.25751 -17.05481 -16.63609 -16.60436 -15.88994 -15.64247 -15.38388 -15.28247 -15.12253 -15.07204 -14.80877 -14.57641 -14.40533 -13.82018 -13.62598 -13.34980 -13.12677 -13.03809 -12.74457 -12.64734 -12.54695 -12.52792 -12.24371 -12.09764 -11.83565 -11.74523 -11.61137 -11.39713 -11.31071 -10.99129 -10.82068 -10.71280 -10.26670 -10.23798 -9.81768 -8.96190 -8.19911 -5.54116 -0.52832 0.20442 0.61580 0.95081 1.28182 1.40176 1.50661 2.11594 2.28103 2.39204 2.87382 3.01839 3.11452 3.32873 3.43424 3.66723 3.74654 3.87443 3.97040 3.99705 4.07348 4.16482 4.27676 4.35803 4.47354 4.53526 4.54891 4.64082 4.78265 4.80075 4.82985 4.90871 4.91849 4.94952 5.00903 5.07356 5.11376 5.12132 5.16351 5.33147 5.38329 5.53428 5.81224 6.07792 6.28054 6.62622 6.85956 7.17641 7.56313 7.94858 9.00487 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.003171 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.605219 B = 8828.819606 C = 9659.359037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.090 0.910 4 C -0.119 4.119 5 C 0.114 3.886 6 N -0.615 5.615 7 C -0.258 4.258 8 H 0.036 0.964 9 C -0.034 4.034 10 N -0.958 5.958 11 Si 0.957 3.043 12 H -0.265 1.265 13 H -0.309 1.309 14 H -0.259 1.259 15 C 0.147 3.853 16 C 0.147 3.853 17 H 0.056 0.944 18 N -0.691 5.691 19 C 0.583 3.417 20 O -0.567 6.567 21 C -0.027 4.027 22 N -0.460 5.460 23 C -0.005 4.005 24 S 0.282 5.718 25 C -0.167 4.167 26 C -0.121 4.121 27 C -0.154 4.154 28 C -0.154 4.154 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.264 0.736 37 H 0.038 0.962 38 H 0.030 0.970 39 H 0.416 0.584 40 H 0.246 0.754 41 H 0.109 0.891 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.147 14.678 -17.810 30.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.108 0.892 4 C -0.158 4.158 5 C -0.010 4.010 6 N -0.340 5.340 7 C -0.387 4.387 8 H 0.054 0.946 9 C -0.229 4.229 10 N -0.604 5.604 11 Si 0.785 3.215 12 H -0.191 1.191 13 H -0.238 1.238 14 H -0.184 1.184 15 C 0.020 3.980 16 C 0.041 3.959 17 H 0.075 0.925 18 N -0.342 5.342 19 C 0.368 3.632 20 O -0.446 6.446 21 C -0.161 4.161 22 N -0.174 5.174 23 C -0.304 4.304 24 S 0.539 5.461 25 C -0.292 4.292 26 C -0.141 4.141 27 C -0.192 4.192 28 C -0.192 4.192 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.254 0.746 40 H 0.262 0.738 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.121 0.879 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -20.083 14.167 -18.296 30.640 hybrid contribution 1.294 -0.259 1.607 2.080 sum -18.789 13.908 -16.689 28.722 Atomic orbital electron populations 1.21754 0.92923 1.01658 1.02860 1.21270 0.97117 0.99696 0.92210 0.89203 1.21993 0.94911 1.00624 0.98297 1.21549 0.94779 0.96838 0.87844 1.44338 1.48426 1.39972 1.01269 1.18771 1.10946 1.02910 1.06080 0.94633 1.25963 0.97264 0.99262 1.00373 1.69995 1.34037 1.24260 1.32092 0.85757 0.75834 0.80950 0.78993 1.19098 1.23760 1.18377 1.21239 0.92854 0.96335 0.87542 1.21327 0.93628 0.96510 0.84475 0.92523 1.45695 1.64525 1.15082 1.08891 1.17538 0.77287 0.85504 0.82829 1.90782 1.52075 1.17164 1.84587 1.20086 1.10143 0.90958 0.94897 1.66929 1.12981 1.10249 1.27272 1.29048 1.03295 1.06987 0.91058 1.82390 1.53981 0.97702 1.12020 1.25071 1.04236 1.02041 0.97822 1.20578 1.04685 0.88568 1.00310 1.23272 1.01884 1.03883 0.90129 1.23154 0.94099 0.99910 1.02071 0.90201 0.93932 0.91971 0.88294 0.93157 0.93926 0.92883 0.92739 0.94444 0.95093 0.74646 0.73830 0.87271 0.86573 0.86913 0.87899 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.02 71.98 0.65 -2.46 16 2 C -0.08 -2.44 2.27 -10.76 -0.02 -2.47 16 3 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.12 -3.97 5.36 30.67 0.16 -3.80 16 5 C 0.11 4.89 4.20 86.36 0.36 5.26 16 6 N -0.62 -31.29 2.77 -699.10 -1.94 -33.23 16 7 C -0.26 -15.90 10.03 84.03 0.84 -15.06 16 8 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 9 C -0.03 -2.08 5.23 84.86 0.44 -1.64 16 10 N -0.96 -62.98 13.97 21.65 0.30 -62.68 16 11 Si 0.96 47.78 24.35 68.60 1.67 49.45 16 12 H -0.26 -12.16 6.62 99.48 0.66 -11.50 16 13 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 14 H -0.26 -12.33 6.63 99.48 0.66 -11.67 16 15 C 0.15 6.54 6.09 86.36 0.53 7.07 16 16 C 0.15 5.37 2.06 45.07 0.09 5.47 16 17 H 0.06 2.48 7.58 -2.38 -0.02 2.46 16 18 N -0.69 -21.68 4.36 -445.57 -1.94 -23.62 16 19 C 0.58 20.36 7.76 86.62 0.67 21.03 16 20 O -0.57 -24.26 13.82 -4.13 -0.06 -24.31 16 21 C -0.03 -0.74 6.70 40.56 0.27 -0.47 16 22 N -0.46 -10.09 10.12 -193.03 -1.95 -12.04 16 23 C 0.00 -0.06 12.17 130.71 1.59 1.53 16 24 S 0.28 3.43 21.77 -56.49 -1.23 2.20 16 25 C -0.17 -3.89 6.04 24.99 0.15 -3.74 16 26 C -0.12 -2.97 5.40 -11.54 -0.06 -3.03 16 27 C -0.15 -2.48 10.03 30.59 0.31 -2.18 16 28 C -0.15 -2.85 10.23 30.59 0.31 -2.54 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.32 7.36 -2.39 -0.02 1.30 16 32 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.70 7.08 -2.38 -0.02 1.69 16 35 H 0.05 2.50 4.50 -2.39 -0.01 2.49 16 36 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.03 1.56 7.93 -2.39 -0.02 1.54 16 39 H 0.42 10.81 7.83 -92.70 -0.73 10.09 16 40 H 0.25 0.89 8.06 -2.91 -0.02 0.86 16 41 H 0.11 3.62 6.17 -2.39 -0.01 3.60 16 42 H 0.12 1.32 7.28 -2.39 -0.02 1.30 16 43 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -81.38 367.56 1.35 -80.04 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.19 Total: 21.22 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 6.30 Total: 2.97 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -5.53 Total: -131.57 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.06 Total: -24.31 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.67 Total: 49.45 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.23 Total: 2.20 kcal Total: -81.38 1.35 -80.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968328252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.599 kcal (2) G-P(sol) polarization free energy of solvation -81.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds