Wall clock time and date at job start Tue Mar 31 2020 19:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.46670 * 2 1 4 4 C 1.53349 * 109.41565 * 240.09708 * 2 1 3 5 5 C 1.53194 * 109.14918 * 178.67647 * 4 2 1 6 6 N 1.46934 * 108.89214 * 54.57866 * 5 4 2 7 7 C 1.36935 * 120.62776 * 126.34278 * 6 5 4 8 8 H 1.08003 * 120.00334 * 331.82288 * 7 6 5 9 9 C 1.38816 * 120.00109 * 151.82327 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07479 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07501 * 9 7 6 12 12 H 1.48500 * 109.47341 * 59.99642 * 11 9 7 13 13 H 1.48504 * 109.47235 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46651 * 299.99824 * 11 9 7 15 15 C 1.46917 * 118.73910 * 306.32295 * 6 5 4 16 16 C 1.53042 * 109.45796 * 119.97381 * 2 1 3 17 17 H 1.08999 * 109.52559 * 301.34719 * 16 2 1 18 18 N 1.46498 * 109.50153 * 61.43341 * 16 2 1 19 19 C 1.34781 * 120.00195 * 204.83823 * 18 16 2 20 20 O 1.21625 * 119.99888 * 359.97438 * 19 18 16 21 21 C 1.47269 * 120.00021 * 179.97438 * 19 18 16 22 22 N 1.33558 * 123.13853 * 0.02562 * 21 19 18 23 23 C 1.28655 * 115.76318 * 180.02562 * 22 21 19 24 24 S 1.70770 * 110.56001 * 359.97438 * 23 22 21 25 25 C 1.35198 * 123.13905 * 179.73082 * 21 19 18 26 26 C 1.50705 * 125.59064 * 0.02562 * 25 21 19 27 27 C 1.53000 * 117.50157 * 188.62046 * 26 25 21 28 28 C 1.52998 * 117.49984 * 119.99460 * 26 25 21 29 29 H 1.09000 * 109.46817 * 300.02558 * 1 2 3 30 30 H 1.08991 * 109.47274 * 60.02564 * 1 2 3 31 31 H 1.08995 * 109.47589 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.68610 * 58.71674 * 4 2 1 33 33 H 1.09002 * 109.47692 * 298.51393 * 4 2 1 34 34 H 1.09003 * 109.58905 * 294.72177 * 5 4 2 35 35 H 1.09001 * 109.58865 * 174.43764 * 5 4 2 36 36 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.58812 * 173.39821 * 15 6 5 38 38 H 1.09007 * 109.58397 * 293.82038 * 15 6 5 39 39 H 0.97007 * 119.99694 * 24.83354 * 18 16 2 40 40 H 1.07999 * 124.71803 * 180.02562 * 23 22 21 41 41 H 1.09003 * 115.54521 * 334.32554 * 26 25 21 42 42 H 1.09000 * 117.49206 * 359.97438 * 27 26 25 43 43 H 1.09001 * 117.49633 * 145.01689 * 27 26 25 44 44 H 1.08999 * 117.49778 * 214.97941 * 28 26 25 45 45 H 1.08997 * 117.49889 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7210 -1.2537 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2490 -0.0001 7 6 4.9763 -2.2735 -0.0002 8 1 5.0042 -2.9704 -0.8249 9 6 5.8614 -2.4166 1.0595 10 7 6.0659 -1.4128 1.8861 11 14 6.7622 -4.0332 1.3125 12 1 7.5860 -4.3338 0.1141 13 1 7.6415 -3.9287 2.5047 14 1 5.7747 -5.1228 1.5204 15 6 3.5714 -0.6889 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6572 -0.2215 2.1401 18 7 1.5801 -2.1118 1.2341 19 6 1.4546 -2.7934 2.3900 20 8 1.7235 -2.2539 3.4464 21 6 0.9920 -4.1915 2.3740 22 7 0.6804 -4.8446 1.2515 23 6 0.2912 -6.0616 1.4022 24 16 0.2912 -6.4908 3.0551 25 6 0.8485 -4.9354 3.4938 26 6 1.1297 -4.4687 4.8989 27 6 1.0997 -5.5185 6.0114 28 6 -0.0298 -4.4928 5.8968 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5134 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6592 -0.2217 -2.1447 33 1 1.6979 -1.7560 -1.2421 34 1 3.9143 0.3410 -1.3673 35 1 3.9437 -1.2829 -2.0987 36 1 6.6846 -1.5126 2.6264 37 1 3.9417 -1.2849 2.0983 38 1 3.9143 0.3407 1.3673 39 1 1.3659 -2.5422 0.3915 40 1 0.0052 -6.7203 0.5956 41 1 1.8547 -3.6597 4.9892 42 1 0.8761 -6.5468 5.7270 43 1 1.8052 -5.4005 6.8339 44 1 -0.0674 -3.7001 6.6439 45 1 -0.9962 -4.8459 5.5369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968328253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:58 Heat of formation + Delta-G solvation = 53.523598 kcal Electronic energy + Delta-G solvation = -28049.560836 eV Core-core repulsion = 24388.180931 eV Total energy + Delta-G solvation = -3661.379906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.36846 -38.86463 -37.35049 -37.05788 -34.06856 -32.69274 -30.96880 -30.43666 -29.16907 -27.33117 -25.86599 -24.01372 -22.87166 -22.47555 -22.06351 -21.65709 -21.02574 -19.54795 -18.63706 -18.05730 -16.73617 -16.61710 -15.76549 -15.12853 -15.01192 -14.81136 -14.40288 -14.16286 -13.93606 -13.84442 -13.53905 -13.44540 -13.16018 -12.77429 -12.54749 -12.14309 -11.98780 -11.83792 -11.67810 -11.52576 -11.33717 -11.06959 -11.01687 -10.86363 -10.68489 -10.61724 -10.45439 -10.18642 -9.86805 -9.78618 -9.63539 -9.45177 -9.29653 -9.26803 -8.77772 -8.40150 -8.23218 -6.58108 -5.71365 -3.13588 0.58003 1.22089 1.63826 2.24385 3.41209 3.47435 3.48624 3.66199 3.88104 3.96616 4.25870 4.50464 4.55155 4.77605 4.93637 5.14538 5.24955 5.30088 5.32211 5.40607 5.47974 5.49743 5.58490 5.62445 5.76410 5.94891 5.97615 5.98192 6.01169 6.09115 6.21491 6.30300 6.35782 6.42615 6.50754 6.60895 6.73402 6.81258 6.95306 7.08157 7.40708 7.50687 7.72919 7.86302 8.23259 8.52751 8.83962 9.27635 9.91747 10.47631 11.36616 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009912 B = 0.005268 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.149138 B = 5314.186430 C = 6522.011609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.130 4.130 5 C 0.143 3.857 6 N -0.586 5.586 7 C -0.249 4.249 8 H 0.062 0.938 9 C 0.007 3.993 10 N -0.899 5.899 11 Si 0.896 3.104 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.286 1.286 15 C 0.161 3.839 16 C 0.124 3.876 17 H 0.076 0.924 18 N -0.677 5.677 19 C 0.592 3.408 20 O -0.539 6.539 21 C 0.013 3.987 22 N -0.430 5.430 23 C -0.008 4.008 24 S 0.179 5.821 25 C -0.151 4.151 26 C -0.082 4.082 27 C -0.179 4.179 28 C -0.160 4.160 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.018 0.982 35 H 0.053 0.947 36 H 0.254 0.746 37 H 0.097 0.903 38 H 0.026 0.974 39 H 0.404 0.596 40 H 0.202 0.798 41 H 0.152 0.848 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.624 -7.241 2.191 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.169 4.169 5 C 0.017 3.983 6 N -0.309 5.309 7 C -0.379 4.379 8 H 0.079 0.921 9 C -0.192 4.192 10 N -0.543 5.543 11 Si 0.726 3.274 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.213 1.213 15 C 0.034 3.966 16 C 0.018 3.982 17 H 0.094 0.906 18 N -0.327 5.327 19 C 0.375 3.625 20 O -0.417 6.417 21 C -0.122 4.122 22 N -0.144 5.144 23 C -0.307 4.307 24 S 0.434 5.566 25 C -0.274 4.274 26 C -0.103 4.103 27 C -0.217 4.217 28 C -0.198 4.198 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.044 0.956 39 H 0.240 0.760 40 H 0.219 0.781 41 H 0.169 0.831 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.511 -7.487 2.966 17.477 hybrid contribution 0.792 -0.304 -0.491 0.980 sum -14.719 -7.791 2.475 16.837 Atomic orbital electron populations 1.21848 0.96033 1.01444 1.00857 1.21356 0.94590 0.99796 0.95481 0.90406 1.22143 0.99199 0.99615 0.95989 1.20924 0.90727 0.96458 0.90234 1.43940 1.48175 1.39577 0.99160 1.19028 1.09479 1.02887 1.06512 0.92054 1.24978 0.97222 0.97095 0.99936 1.69991 1.37353 1.28886 1.18042 0.86467 0.79327 0.84288 0.77299 1.20940 1.21614 1.21277 1.21201 0.86578 0.97757 0.91036 1.21857 0.99039 0.80306 0.96976 0.90551 1.45650 1.65026 1.13637 1.08348 1.16855 0.77884 0.83145 0.84613 1.90710 1.51871 1.68431 1.30720 1.20524 1.06818 0.97910 0.86914 1.66958 1.11246 1.06641 1.29557 1.28271 1.05870 0.96470 1.00110 1.82596 1.59010 1.11299 1.03667 1.24742 1.05221 0.97640 0.99828 1.20730 1.03620 1.02566 0.83363 1.23146 1.02460 0.95027 1.01060 1.23039 0.93340 1.01949 1.01514 0.93166 0.93162 0.92985 0.92758 0.92550 0.96450 0.92879 0.93639 0.88521 0.95633 0.75995 0.78095 0.83090 0.88842 0.87681 0.87791 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.05 37.16 0.34 -1.66 16 2 C -0.09 -1.53 2.48 -90.42 -0.22 -1.76 16 3 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 4 C -0.13 -2.18 5.23 -26.45 -0.14 -2.32 16 5 C 0.14 2.96 6.50 -3.71 -0.02 2.93 16 6 N -0.59 -14.62 2.91 -172.31 -0.50 -15.12 16 7 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 8 H 0.06 1.70 7.89 -52.48 -0.41 1.28 16 9 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 10 N -0.90 -26.95 11.20 55.49 0.62 -26.33 16 11 Si 0.90 22.77 29.59 -169.99 -5.03 17.75 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 C 0.16 3.95 4.90 -3.71 -0.02 3.93 16 16 C 0.12 2.46 2.24 -67.81 -0.15 2.31 16 17 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 18 N -0.68 -13.31 4.25 -54.81 -0.23 -13.54 16 19 C 0.59 12.20 7.76 -12.59 -0.10 12.11 16 20 O -0.54 -12.13 13.82 5.26 0.07 -12.05 16 21 C 0.01 0.23 6.70 -84.53 -0.57 -0.34 16 22 N -0.43 -7.01 10.12 -12.36 -0.13 -7.13 16 23 C -0.01 -0.09 12.17 51.43 0.63 0.53 16 24 S 0.18 2.00 21.77 -107.50 -2.34 -0.34 16 25 C -0.15 -2.34 6.04 -35.39 -0.21 -2.56 16 26 C -0.08 -1.22 5.40 -91.77 -0.50 -1.71 16 27 C -0.18 -2.00 10.03 -26.73 -0.27 -2.27 16 28 C -0.16 -1.83 10.23 -26.73 -0.27 -2.10 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.74 7.54 -51.93 -0.39 0.34 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.97 6.41 -51.93 -0.33 0.64 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 36 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.10 2.78 6.06 -51.93 -0.31 2.47 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.40 7.67 6.16 -40.82 -0.25 7.42 16 40 H 0.20 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.15 2.69 6.17 -51.93 -0.32 2.37 16 42 H 0.09 0.93 7.28 -51.93 -0.38 0.55 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -32.52 370.89 -10.26 -42.78 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.57 Total: 8.31 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.74 Total: 0.10 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.24 Total: -62.13 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.03 Total: 17.75 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.34 Total: -0.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.52 -10.26 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968328253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.301 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds