Wall clock time and date at job start Tue Mar 31 2020 19:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.46670 * 2 1 4 4 C 1.53349 * 109.41565 * 240.09708 * 2 1 3 5 5 C 1.53194 * 109.14918 * 178.67647 * 4 2 1 6 6 N 1.46934 * 108.89214 * 54.57866 * 5 4 2 7 7 C 1.36935 * 120.62776 * 126.34278 * 6 5 4 8 8 H 1.08003 * 120.00334 * 331.82288 * 7 6 5 9 9 C 1.38816 * 120.00109 * 151.82327 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07479 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07501 * 9 7 6 12 12 H 1.48500 * 109.47341 * 59.99642 * 11 9 7 13 13 H 1.48504 * 109.47235 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46651 * 299.99824 * 11 9 7 15 15 C 1.46917 * 118.73910 * 306.32295 * 6 5 4 16 16 C 1.53042 * 109.45796 * 119.97381 * 2 1 3 17 17 H 1.08999 * 109.52559 * 301.34719 * 16 2 1 18 18 N 1.46498 * 109.50153 * 61.43341 * 16 2 1 19 19 C 1.34781 * 120.00195 * 204.83823 * 18 16 2 20 20 O 1.21625 * 119.99888 * 359.97438 * 19 18 16 21 21 C 1.47269 * 120.00021 * 179.97438 * 19 18 16 22 22 N 1.33558 * 123.13853 * 0.02562 * 21 19 18 23 23 C 1.28655 * 115.76318 * 180.02562 * 22 21 19 24 24 S 1.70770 * 110.56001 * 359.97438 * 23 22 21 25 25 C 1.35198 * 123.13905 * 179.73082 * 21 19 18 26 26 C 1.50705 * 125.59064 * 0.02562 * 25 21 19 27 27 C 1.53000 * 117.50157 * 188.62046 * 26 25 21 28 28 C 1.52998 * 117.49984 * 119.99460 * 26 25 21 29 29 H 1.09000 * 109.46817 * 300.02558 * 1 2 3 30 30 H 1.08991 * 109.47274 * 60.02564 * 1 2 3 31 31 H 1.08995 * 109.47589 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.68610 * 58.71674 * 4 2 1 33 33 H 1.09002 * 109.47692 * 298.51393 * 4 2 1 34 34 H 1.09003 * 109.58905 * 294.72177 * 5 4 2 35 35 H 1.09001 * 109.58865 * 174.43764 * 5 4 2 36 36 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.58812 * 173.39821 * 15 6 5 38 38 H 1.09007 * 109.58397 * 293.82038 * 15 6 5 39 39 H 0.97007 * 119.99694 * 24.83354 * 18 16 2 40 40 H 1.07999 * 124.71803 * 180.02562 * 23 22 21 41 41 H 1.09003 * 115.54521 * 334.32554 * 26 25 21 42 42 H 1.09000 * 117.49206 * 359.97438 * 27 26 25 43 43 H 1.09001 * 117.49633 * 145.01689 * 27 26 25 44 44 H 1.08999 * 117.49778 * 214.97941 * 28 26 25 45 45 H 1.08997 * 117.49889 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7210 -1.2537 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2490 -0.0001 7 6 4.9763 -2.2735 -0.0002 8 1 5.0042 -2.9704 -0.8249 9 6 5.8614 -2.4166 1.0595 10 7 6.0659 -1.4128 1.8861 11 14 6.7622 -4.0332 1.3125 12 1 7.5860 -4.3338 0.1141 13 1 7.6415 -3.9287 2.5047 14 1 5.7747 -5.1228 1.5204 15 6 3.5714 -0.6889 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6572 -0.2215 2.1401 18 7 1.5801 -2.1118 1.2341 19 6 1.4546 -2.7934 2.3900 20 8 1.7235 -2.2539 3.4464 21 6 0.9920 -4.1915 2.3740 22 7 0.6804 -4.8446 1.2515 23 6 0.2912 -6.0616 1.4022 24 16 0.2912 -6.4908 3.0551 25 6 0.8485 -4.9354 3.4938 26 6 1.1297 -4.4687 4.8989 27 6 1.0997 -5.5185 6.0114 28 6 -0.0298 -4.4928 5.8968 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5134 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6592 -0.2217 -2.1447 33 1 1.6979 -1.7560 -1.2421 34 1 3.9143 0.3410 -1.3673 35 1 3.9437 -1.2829 -2.0987 36 1 6.6846 -1.5126 2.6264 37 1 3.9417 -1.2849 2.0983 38 1 3.9143 0.3407 1.3673 39 1 1.3659 -2.5422 0.3915 40 1 0.0052 -6.7203 0.5956 41 1 1.8547 -3.6597 4.9892 42 1 0.8761 -6.5468 5.7270 43 1 1.8052 -5.4005 6.8339 44 1 -0.0674 -3.7001 6.6439 45 1 -0.9962 -4.8459 5.5369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968328253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:57 Heat of formation + Delta-G solvation = 32.678022 kcal Electronic energy + Delta-G solvation = -28050.464769 eV Core-core repulsion = 24388.180931 eV Total energy + Delta-G solvation = -3662.283838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.68252 -40.30459 -38.79261 -38.18986 -35.93628 -34.30212 -32.85378 -31.63701 -30.78246 -28.98831 -27.11459 -25.81464 -24.28618 -23.49076 -23.26512 -22.94276 -22.74342 -20.89633 -20.29800 -19.22621 -18.59290 -17.91345 -17.03499 -16.85616 -16.48561 -16.32097 -15.75537 -15.59349 -15.32007 -15.15108 -15.10055 -14.87022 -14.71666 -14.38570 -14.13600 -13.62662 -13.18837 -13.14081 -13.05270 -13.02205 -12.73074 -12.64808 -12.54408 -12.51366 -12.30155 -12.09081 -11.97730 -11.69257 -11.59638 -11.31751 -11.09567 -10.90754 -10.69896 -10.55417 -10.24573 -10.06943 -9.71907 -8.65506 -7.88741 -5.33057 -0.50305 0.22319 0.60723 1.02557 1.34314 1.38547 1.43674 2.26735 2.44460 2.50119 2.88654 3.18089 3.26328 3.44486 3.66912 3.74782 3.85033 3.96447 4.01797 4.10125 4.11474 4.18708 4.49347 4.55508 4.63130 4.64532 4.68778 4.74705 4.85353 4.88994 4.92693 4.94395 5.06249 5.11611 5.13397 5.16194 5.21393 5.24629 5.43350 5.50346 5.57096 5.68438 5.72511 6.36581 6.37233 6.73829 7.12163 7.30869 7.85559 8.36280 9.15956 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009912 B = 0.005268 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.149138 B = 5314.186430 C = 6522.011609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.082 0.918 4 C -0.116 4.116 5 C 0.137 3.863 6 N -0.600 5.600 7 C -0.249 4.249 8 H 0.064 0.936 9 C -0.050 4.050 10 N -0.931 5.931 11 Si 0.953 3.047 12 H -0.267 1.267 13 H -0.296 1.296 14 H -0.289 1.289 15 C 0.173 3.827 16 C 0.134 3.866 17 H 0.066 0.934 18 N -0.673 5.673 19 C 0.580 3.420 20 O -0.573 6.573 21 C -0.027 4.027 22 N -0.463 5.463 23 C -0.009 4.009 24 S 0.277 5.723 25 C -0.170 4.170 26 C -0.123 4.123 27 C -0.157 4.157 28 C -0.144 4.144 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.018 0.982 35 H 0.055 0.945 36 H 0.245 0.755 37 H 0.048 0.952 38 H 0.001 0.999 39 H 0.407 0.593 40 H 0.244 0.756 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.253 -9.759 0.957 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.100 0.900 4 C -0.155 4.155 5 C 0.012 3.988 6 N -0.323 5.323 7 C -0.380 4.380 8 H 0.082 0.918 9 C -0.245 4.245 10 N -0.578 5.578 11 Si 0.782 3.218 12 H -0.193 1.193 13 H -0.222 1.222 14 H -0.216 1.216 15 C 0.046 3.954 16 C 0.028 3.972 17 H 0.084 0.916 18 N -0.322 5.322 19 C 0.365 3.635 20 O -0.454 6.454 21 C -0.161 4.161 22 N -0.178 5.178 23 C -0.308 4.308 24 S 0.533 5.467 25 C -0.294 4.294 26 C -0.144 4.144 27 C -0.195 4.195 28 C -0.182 4.182 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.019 0.981 39 H 0.245 0.755 40 H 0.260 0.740 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.167 -10.018 1.684 20.814 hybrid contribution 1.590 0.417 -0.082 1.646 sum -16.576 -9.601 1.602 19.223 Atomic orbital electron populations 1.21742 0.93217 1.01734 1.02396 1.21328 0.96785 0.99238 0.93237 0.89978 1.22013 0.95802 1.00096 0.97604 1.21136 0.93538 0.96035 0.88111 1.44125 1.48021 1.39453 1.00683 1.19335 1.09071 1.03445 1.06135 0.91846 1.25683 0.98755 0.99793 1.00270 1.70159 1.38395 1.30656 1.18567 0.85547 0.78178 0.80738 0.77352 1.19275 1.22196 1.21569 1.20870 0.89821 0.95139 0.89619 1.21582 0.95506 0.81344 0.98809 0.91558 1.45583 1.64822 1.13360 1.08466 1.17459 0.77254 0.84615 0.84202 1.90682 1.53288 1.69703 1.31772 1.20249 1.10016 0.97093 0.88727 1.66920 1.13165 1.08415 1.29256 1.29036 1.03690 0.95666 1.02388 1.82144 1.56332 1.06654 1.01534 1.25088 1.04547 1.00268 0.99508 1.20566 1.05351 1.03813 0.84662 1.23278 1.01948 0.95207 0.99036 1.23150 0.93330 1.02043 0.99706 0.92976 0.90279 0.93302 0.88837 0.92779 0.96439 0.92679 0.94551 0.93388 0.98069 0.75533 0.73984 0.87519 0.86820 0.86864 0.87346 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 9.05 71.98 0.65 -2.73 16 2 C -0.09 -2.78 2.48 -10.66 -0.03 -2.80 16 3 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 4 C -0.12 -3.68 5.23 30.78 0.16 -3.51 16 5 C 0.14 5.60 6.50 86.36 0.56 6.17 16 6 N -0.60 -30.86 2.91 -699.07 -2.04 -32.90 16 7 C -0.25 -14.28 9.58 84.03 0.81 -13.48 16 8 H 0.06 3.54 7.89 -2.91 -0.02 3.52 16 9 C -0.05 -2.95 4.92 84.86 0.42 -2.54 16 10 N -0.93 -59.03 11.20 21.65 0.24 -58.79 16 11 Si 0.95 48.28 29.59 68.60 2.03 50.31 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 13 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 14 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 15 C 0.17 9.00 4.90 86.37 0.42 9.42 16 16 C 0.13 5.54 2.24 45.07 0.10 5.64 16 17 H 0.07 2.85 7.58 -2.39 -0.02 2.83 16 18 N -0.67 -27.47 4.25 -445.57 -1.89 -29.36 16 19 C 0.58 25.32 7.76 86.62 0.67 25.99 16 20 O -0.57 -28.09 13.82 -4.11 -0.06 -28.15 16 21 C -0.03 -1.00 6.70 40.56 0.27 -0.73 16 22 N -0.46 -14.68 10.12 -193.03 -1.95 -16.63 16 23 C -0.01 -0.19 12.17 130.71 1.59 1.40 16 24 S 0.28 5.31 21.77 -56.49 -1.23 4.08 16 25 C -0.17 -5.23 6.04 24.99 0.15 -5.08 16 26 C -0.12 -3.73 5.40 -11.54 -0.06 -3.79 16 27 C -0.16 -3.25 10.03 30.60 0.31 -2.94 16 28 C -0.14 -3.12 10.23 30.60 0.31 -2.81 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.28 7.54 -2.39 -0.02 1.26 16 32 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.05 1.77 6.41 -2.39 -0.02 1.75 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 35 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 36 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.05 2.98 6.06 -2.39 -0.01 2.96 16 38 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 39 H 0.41 15.71 6.16 -92.70 -0.57 15.14 16 40 H 0.24 2.82 8.06 -2.91 -0.02 2.80 16 41 H 0.11 4.19 6.17 -2.39 -0.01 4.18 16 42 H 0.11 1.86 7.28 -2.39 -0.02 1.84 16 43 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -77.66 370.89 1.88 -75.78 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.44 Total: 27.45 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 6.34 Total: 8.21 kcal Atomic # 7 Polarization: -132.04 SS G_CDS: -5.64 Total: -137.68 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.06 Total: -28.15 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.23 Total: 4.08 kcal Total: -77.66 1.88 -75.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968328253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.458 kcal (2) G-P(sol) polarization free energy of solvation -77.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds