Wall clock time and date at job start Tue Mar 31 2020 19:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.45064 * 2 1 4 4 C 1.53041 * 109.46023 * 240.03003 * 2 1 3 5 5 C 1.53196 * 109.31028 * 178.61663 * 4 2 1 6 6 N 1.46920 * 108.77724 * 54.63770 * 5 4 2 7 7 C 1.36938 * 120.63137 * 126.38756 * 6 5 4 8 8 H 1.08004 * 119.99974 * 207.68091 * 7 6 5 9 9 C 1.38814 * 119.99919 * 27.67713 * 7 6 5 10 10 N 1.31618 * 120.00137 * 17.36930 * 9 7 6 11 11 Si 1.86797 * 119.99908 * 197.36775 * 9 7 6 12 12 H 1.48505 * 109.47538 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.47073 * 119.99952 * 11 9 7 14 14 H 1.48499 * 109.47511 * 240.00094 * 11 9 7 15 15 C 1.46934 * 118.76718 * 306.41283 * 6 5 4 16 16 C 1.53046 * 109.45587 * 119.96561 * 2 1 3 17 17 H 1.08999 * 109.49610 * 61.40131 * 16 2 1 18 18 N 1.46492 * 109.49802 * 301.33620 * 16 2 1 19 19 C 1.34773 * 120.00206 * 155.06788 * 18 16 2 20 20 O 1.21635 * 119.99853 * 359.97438 * 19 18 16 21 21 C 1.47271 * 120.00502 * 179.97438 * 19 18 16 22 22 N 1.33561 * 123.13502 * 0.28455 * 21 19 18 23 23 C 1.28652 * 115.76077 * 180.23406 * 22 21 19 24 24 S 1.70776 * 110.55920 * 359.52442 * 23 22 21 25 25 C 1.35200 * 123.14189 * 179.97438 * 21 19 18 26 26 C 1.50703 * 125.59077 * 359.97438 * 25 21 19 27 27 C 1.53001 * 117.50024 * 188.74422 * 26 25 21 28 28 C 1.52994 * 117.50126 * 120.08380 * 26 25 21 29 29 H 1.08996 * 109.47029 * 300.03474 * 1 2 3 30 30 H 1.09001 * 109.46265 * 60.03840 * 1 2 3 31 31 H 1.09001 * 109.46778 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.50109 * 298.57035 * 4 2 1 33 33 H 1.09001 * 109.49728 * 58.66482 * 4 2 1 34 34 H 1.09001 * 109.58147 * 174.42604 * 5 4 2 35 35 H 1.09001 * 109.58748 * 294.70291 * 5 4 2 36 36 H 0.96993 * 119.99986 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.55953 * 293.78623 * 15 6 5 38 38 H 1.08996 * 109.62115 * 173.35489 * 15 6 5 39 39 H 0.96997 * 120.00315 * 335.06409 * 18 16 2 40 40 H 1.08001 * 124.71914 * 179.78509 * 23 22 21 41 41 H 1.08999 * 115.54819 * 334.41312 * 26 25 21 42 42 H 1.08998 * 117.49605 * 359.97438 * 27 26 25 43 43 H 1.08998 * 117.49363 * 145.01877 * 27 26 25 44 44 H 1.09002 * 117.49604 * 214.98279 * 28 26 25 45 45 H 1.08997 * 117.50201 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5715 -0.6887 -1.2641 6 7 4.0679 -1.2489 0.0001 7 6 4.9761 -2.2738 0.0001 8 1 5.0090 -2.9661 0.8285 9 6 5.8543 -2.4230 -1.0645 10 7 6.0605 -1.4212 -1.8929 11 14 6.7435 -4.0455 -1.3213 12 1 6.3407 -5.0041 -0.2611 13 1 6.3861 -4.6006 -2.6516 14 1 8.2101 -3.8221 -1.2560 15 6 3.5714 -0.6894 1.2648 16 6 2.0398 -0.7208 1.2502 17 1 1.6972 -1.7555 1.2386 18 7 1.5255 -0.0487 2.4459 19 6 1.3982 -0.7318 3.6007 20 8 1.7099 -1.9065 3.6499 21 6 0.8818 -0.0561 4.8030 22 7 0.5160 1.2283 4.8183 23 6 0.0892 1.6748 5.9468 24 16 0.1080 0.4398 7.1262 25 6 0.7278 -0.6797 5.9927 26 6 1.0497 -2.1249 6.2737 27 6 0.6155 -2.6955 7.6252 28 6 2.0958 -2.4193 7.3506 29 1 -0.3633 0.5144 0.8896 30 1 -0.3632 0.5133 -0.8904 31 1 -0.3633 -1.0277 0.0005 32 1 1.6978 -1.7557 -1.2383 33 1 1.6573 -0.2208 -2.1398 34 1 3.9417 -1.2846 -2.0983 35 1 3.9144 0.3406 -1.3698 36 1 6.6744 -1.5253 -2.6365 37 1 3.9148 0.3400 1.3682 38 1 3.9411 -1.2856 2.0989 39 1 1.2766 0.8879 2.4067 40 1 -0.2396 2.6884 6.1227 41 1 1.0140 -2.7906 5.4114 42 1 0.0974 -2.0256 8.3114 43 1 0.2945 -3.7369 7.6520 44 1 2.7481 -3.2789 7.1969 45 1 2.5516 -1.5677 7.8556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968328254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:00 Heat of formation + Delta-G solvation = 30.340612 kcal Electronic energy + Delta-G solvation = -27043.526600 eV Core-core repulsion = 23381.141404 eV Total energy + Delta-G solvation = -3662.385195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.72865 -40.26889 -38.92405 -38.20099 -36.20467 -34.48606 -33.06555 -31.63493 -30.61213 -29.04188 -27.11570 -25.87340 -24.43274 -23.44009 -23.14344 -22.89293 -22.60410 -21.32036 -20.44923 -19.17878 -18.73075 -17.92263 -17.10149 -16.94127 -16.56216 -16.42528 -15.73572 -15.60866 -15.41534 -15.21737 -15.10521 -14.94355 -14.73158 -14.44048 -14.19659 -13.62332 -13.25688 -13.18964 -13.10472 -13.02042 -12.76585 -12.69668 -12.54225 -12.32315 -12.09370 -12.05853 -11.96553 -11.77773 -11.66168 -11.40211 -11.29397 -10.93369 -10.72532 -10.62703 -10.25532 -10.19726 -9.80105 -8.72808 -7.92658 -5.38398 -0.52394 0.21203 0.61561 0.95788 1.42380 1.43726 1.55753 2.14720 2.28766 2.49390 2.87908 3.12759 3.21385 3.43491 3.67398 3.70756 3.77240 3.96748 3.99673 4.07227 4.09101 4.17249 4.39923 4.47245 4.55582 4.61389 4.65250 4.72456 4.83334 4.88528 4.91139 4.93274 4.99025 5.04560 5.11041 5.12699 5.17377 5.22320 5.39494 5.44065 5.53351 5.60188 5.73896 6.29024 6.34526 6.63728 7.09868 7.18168 7.78678 8.29860 9.13488 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.003246 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.125814 B = 8624.583386 C = 9958.142921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 H 0.076 0.924 4 C -0.121 4.121 5 C 0.173 3.827 6 N -0.605 5.605 7 C -0.269 4.269 8 H 0.053 0.947 9 C -0.043 4.043 10 N -0.929 5.929 11 Si 0.967 3.033 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.287 1.287 15 C 0.147 3.853 16 C 0.151 3.849 17 H 0.060 0.940 18 N -0.692 5.692 19 C 0.584 3.416 20 O -0.566 6.566 21 C -0.027 4.027 22 N -0.462 5.462 23 C -0.006 4.006 24 S 0.282 5.718 25 C -0.167 4.167 26 C -0.118 4.118 27 C -0.149 4.149 28 C -0.161 4.161 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.003 0.997 36 H 0.253 0.747 37 H 0.015 0.985 38 H 0.030 0.970 39 H 0.414 0.586 40 H 0.245 0.755 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.816 7.269 19.775 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.095 0.905 4 C -0.161 4.161 5 C 0.048 3.952 6 N -0.329 5.329 7 C -0.399 4.399 8 H 0.071 0.929 9 C -0.239 4.239 10 N -0.575 5.575 11 Si 0.794 3.206 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.214 1.214 15 C 0.020 3.980 16 C 0.045 3.955 17 H 0.079 0.921 18 N -0.343 5.343 19 C 0.369 3.631 20 O -0.445 6.445 21 C -0.161 4.161 22 N -0.177 5.177 23 C -0.305 4.305 24 S 0.540 5.460 25 C -0.291 4.291 26 C -0.139 4.139 27 C -0.187 4.187 28 C -0.199 4.199 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.021 0.979 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.049 0.951 39 H 0.251 0.749 40 H 0.261 0.739 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.120 0.880 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.755 6.841 20.204 27.753 hybrid contribution 1.374 -0.793 -1.495 2.180 sum -16.380 6.048 18.709 25.591 Atomic orbital electron populations 1.21750 0.92998 1.01704 1.02606 1.21234 0.96927 0.99245 0.92820 0.90539 1.22076 0.96710 0.99880 0.97389 1.20713 0.90628 0.95393 0.88505 1.44221 1.48264 1.39748 1.00667 1.19436 1.10637 1.03585 1.06245 0.92913 1.25730 0.98032 1.00582 0.99522 1.70177 1.38391 1.30586 1.18309 0.85229 0.77771 0.79847 0.77728 1.19859 1.20852 1.21384 1.21178 0.92809 0.95473 0.88574 1.21314 0.93761 0.96353 0.84114 0.92144 1.45748 1.64382 1.15059 1.09078 1.17524 0.77341 0.85549 0.82693 1.90756 1.51977 1.17023 1.84788 1.20097 1.10068 0.90900 0.95056 1.66936 1.12952 1.10430 1.27352 1.29043 1.03401 1.07005 0.91017 1.82361 1.54106 0.97553 1.12016 1.25082 1.04098 1.02035 0.97901 1.20599 1.07807 0.89860 0.95640 1.23284 0.96830 1.03503 0.95042 1.23164 0.92821 1.04113 0.99844 0.92054 0.90598 0.93600 0.93294 0.89693 0.92401 0.97863 0.93795 0.96711 0.95135 0.74916 0.73921 0.86807 0.86628 0.86525 0.87990 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.02 71.98 0.65 -2.83 16 2 C -0.08 -2.76 2.27 -10.76 -0.02 -2.79 16 3 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 4 C -0.12 -4.61 5.36 30.67 0.16 -4.45 16 5 C 0.17 8.60 5.31 86.36 0.46 9.06 16 6 N -0.61 -32.96 3.00 -699.07 -2.09 -35.06 16 7 C -0.27 -16.09 9.58 84.03 0.81 -15.28 16 8 H 0.05 3.22 7.89 -2.91 -0.02 3.20 16 9 C -0.04 -2.50 4.91 84.86 0.42 -2.09 16 10 N -0.93 -56.30 11.19 21.65 0.24 -56.06 16 11 Si 0.97 47.07 29.59 68.60 2.03 49.10 16 12 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 14 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 15 C 0.15 7.03 6.09 86.36 0.53 7.56 16 16 C 0.15 5.89 2.06 45.07 0.09 5.99 16 17 H 0.06 2.71 7.58 -2.39 -0.02 2.69 16 18 N -0.69 -23.22 4.36 -445.57 -1.94 -25.17 16 19 C 0.58 20.92 7.76 86.62 0.67 21.59 16 20 O -0.57 -24.15 13.82 -4.14 -0.06 -24.20 16 21 C -0.03 -0.78 6.70 40.56 0.27 -0.51 16 22 N -0.46 -10.75 10.12 -193.02 -1.95 -12.71 16 23 C -0.01 -0.08 12.17 130.71 1.59 1.51 16 24 S 0.28 3.57 21.77 -56.49 -1.23 2.35 16 25 C -0.17 -3.93 6.04 24.99 0.15 -3.78 16 26 C -0.12 -2.87 5.40 -11.54 -0.06 -2.93 16 27 C -0.15 -2.30 10.03 30.62 0.31 -1.99 16 28 C -0.16 -3.12 10.24 30.62 0.31 -2.81 16 29 H 0.06 1.47 7.36 -2.39 -0.02 1.45 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.06 3.23 6.04 -2.39 -0.01 3.22 16 35 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 38 H 0.03 1.58 7.93 -2.39 -0.02 1.56 16 39 H 0.41 11.97 7.83 -92.71 -0.73 11.24 16 40 H 0.24 1.16 8.06 -2.91 -0.02 1.13 16 41 H 0.11 3.59 6.17 -2.39 -0.01 3.58 16 42 H 0.12 1.25 7.28 -2.39 -0.02 1.23 16 43 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -75.91 373.98 1.61 -74.30 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.28 Total: 21.19 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 6.33 Total: 6.26 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -5.75 Total: -128.99 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.06 Total: -24.20 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.23 Total: 2.35 kcal Total: -75.91 1.61 -74.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968328254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.637 kcal (2) G-P(sol) polarization free energy of solvation -75.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds