Wall clock time and date at job start Tue Mar 31 2020 19:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.45649 * 2 1 4 4 C 1.53037 * 109.46197 * 119.95866 * 2 1 3 5 5 C 1.53187 * 109.31275 * 181.38694 * 4 2 1 6 6 N 1.46928 * 108.77627 * 305.36344 * 5 4 2 7 7 C 1.36937 * 120.62942 * 233.63324 * 6 5 4 8 8 H 1.08006 * 119.99565 * 152.63038 * 7 6 5 9 9 C 1.38806 * 120.00170 * 332.62363 * 7 6 5 10 10 N 1.31625 * 119.99922 * 159.33969 * 9 7 6 11 11 Si 1.86797 * 120.00169 * 339.34477 * 9 7 6 12 12 H 1.48498 * 109.47377 * 92.96314 * 11 9 7 13 13 H 1.48500 * 109.47337 * 212.96178 * 11 9 7 14 14 H 1.48506 * 109.47162 * 332.95917 * 11 9 7 15 15 C 1.46990 * 118.75357 * 53.60921 * 6 5 4 16 16 C 1.53034 * 109.46093 * 240.02875 * 2 1 3 17 17 H 1.09003 * 109.49665 * 58.62598 * 16 2 1 18 18 N 1.46500 * 109.49747 * 298.56717 * 16 2 1 19 19 C 1.34779 * 120.00314 * 155.06364 * 18 16 2 20 20 O 1.21687 * 119.99757 * 359.97438 * 19 18 16 21 21 C 1.46685 * 120.00054 * 179.97438 * 19 18 16 22 22 S 1.76214 * 126.13162 * 0.13265 * 21 19 18 23 23 C 1.70949 * 90.31511 * 180.20448 * 22 21 19 24 24 N 1.29432 * 110.38860 * 359.81433 * 23 22 21 25 25 C 1.30941 * 117.36486 * 359.97438 * 24 23 22 26 26 C 1.50709 * 122.90132 * 180.02562 * 25 24 23 27 27 C 1.52995 * 117.49943 * 300.02329 * 26 25 24 28 28 C 1.52991 * 117.49951 * 8.65047 * 26 25 24 29 29 H 1.08989 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46748 * 299.97220 * 1 2 3 31 31 H 1.09003 * 109.47085 * 59.96972 * 1 2 3 32 32 H 1.09002 * 109.49620 * 301.34083 * 4 2 1 33 33 H 1.09001 * 109.49788 * 61.43146 * 4 2 1 34 34 H 1.08997 * 109.58869 * 65.15261 * 5 4 2 35 35 H 1.09004 * 109.58458 * 185.43690 * 5 4 2 36 36 H 0.97003 * 119.99807 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.63348 * 186.62011 * 15 6 5 38 38 H 1.09003 * 109.58341 * 66.16948 * 15 6 5 39 39 H 0.96998 * 119.99787 * 335.05845 * 18 16 2 40 40 H 1.07993 * 124.80799 * 179.78550 * 23 22 21 41 41 H 1.09002 * 115.55617 * 154.33870 * 26 25 24 42 42 H 1.09005 * 117.50022 * 0.02562 * 27 26 25 43 43 H 1.08995 * 117.49970 * 214.98318 * 27 26 25 44 44 H 1.09001 * 117.50025 * 145.02420 * 28 26 25 45 45 H 1.09001 * 117.49797 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5714 -0.6883 1.2643 6 7 4.0679 -1.2488 0.0001 7 6 4.9758 -2.2739 0.0003 8 1 5.0120 -2.9632 -0.8304 9 6 5.8496 -2.4270 1.0679 10 7 6.4253 -3.5905 1.2854 11 14 6.2083 -0.9820 2.1959 12 1 5.2798 -1.0158 3.3543 13 1 7.6089 -1.0689 2.6816 14 1 6.0214 0.2877 1.4486 15 6 3.5714 -0.6887 -1.2650 16 6 2.0399 -0.7208 -1.2500 17 1 1.6567 -0.2212 -2.1398 18 7 1.5802 -2.1117 -1.2340 19 6 1.4528 -2.7927 -2.3901 20 8 1.7193 -2.2521 -3.4472 21 6 0.9930 -4.1856 -2.3740 22 16 0.5619 -5.1210 -0.9443 23 6 0.2073 -6.4752 -1.9256 24 7 0.4055 -6.1924 -3.1730 25 6 0.8207 -4.9835 -3.4575 26 6 1.0902 -4.5209 -4.8663 27 6 2.1530 -5.2762 -5.6667 28 6 0.6715 -5.4502 -6.0072 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 1.6572 -0.2204 2.1398 33 1 1.6979 -1.7554 1.2385 34 1 3.9143 0.3412 1.3672 35 1 3.9417 -1.2821 2.1000 36 1 7.0357 -3.6976 2.0317 37 1 3.9412 -1.2846 -2.0995 38 1 3.9142 0.3409 -1.3682 39 1 1.3675 -2.5426 -0.3914 40 1 -0.1334 -7.4313 -1.5569 41 1 1.0026 -3.4474 -5.0335 42 1 2.6570 -6.1081 -5.1746 43 1 2.7646 -4.6997 -6.3606 44 1 0.3086 -4.9880 -6.9253 45 1 0.2015 -6.3963 -5.7390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968399982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:26 Heat of formation + Delta-G solvation = 40.545303 kcal Electronic energy + Delta-G solvation = -27748.758554 eV Core-core repulsion = 24086.815867 eV Total energy + Delta-G solvation = -3661.942687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65021 -40.79957 -39.10164 -37.45214 -36.09708 -34.30998 -33.37921 -32.13492 -30.84449 -29.14130 -27.22012 -25.62703 -24.50917 -23.90052 -23.26928 -23.07962 -22.65118 -20.65725 -20.36105 -19.15947 -18.62448 -18.01168 -17.24242 -17.04405 -16.66725 -16.32300 -15.90839 -15.56037 -15.41032 -15.30824 -15.18834 -15.10617 -14.73758 -14.63016 -14.24487 -13.87310 -13.62332 -13.36498 -13.11523 -12.94993 -12.67430 -12.60335 -12.42308 -12.35764 -12.21796 -11.85186 -11.75975 -11.57597 -11.45158 -11.35878 -11.17648 -11.12340 -10.73523 -10.70278 -10.61540 -10.09644 -9.72138 -8.86790 -8.15082 -5.46830 -0.79118 0.17542 0.55221 1.29651 1.34992 1.43203 1.51798 2.00963 2.21705 2.41907 2.97674 3.07894 3.12680 3.31605 3.61591 3.72408 3.88557 3.90820 3.96510 4.00259 4.10127 4.22849 4.31148 4.45762 4.51558 4.55098 4.67092 4.70960 4.73063 4.84598 4.85719 4.94451 4.98244 5.01801 5.03803 5.11834 5.18206 5.19706 5.28025 5.36254 5.43892 5.57419 5.86557 6.11818 6.41253 6.56159 6.92524 7.11954 7.63088 8.02046 9.05072 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012637 B = 0.004274 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.111370 B = 6549.101864 C = 7113.074284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.096 0.904 4 C -0.123 4.123 5 C 0.116 3.884 6 N -0.611 5.611 7 C -0.239 4.239 8 H 0.034 0.966 9 C -0.033 4.033 10 N -0.958 5.958 11 Si 0.951 3.049 12 H -0.268 1.268 13 H -0.317 1.317 14 H -0.262 1.262 15 C 0.135 3.865 16 C 0.141 3.859 17 H 0.092 0.908 18 N -0.691 5.691 19 C 0.593 3.407 20 O -0.560 6.560 21 C -0.320 4.320 22 S 0.198 5.802 23 C 0.047 3.953 24 N -0.493 5.493 25 C 0.164 3.836 26 C -0.118 4.118 27 C -0.161 4.161 28 C -0.138 4.138 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.037 0.963 35 H 0.051 0.949 36 H 0.260 0.740 37 H 0.034 0.966 38 H 0.047 0.953 39 H 0.400 0.600 40 H 0.249 0.751 41 H 0.126 0.874 42 H 0.083 0.917 43 H 0.108 0.892 44 H 0.118 0.882 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.626 0.588 -3.765 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.115 0.885 4 C -0.162 4.162 5 C -0.009 4.009 6 N -0.336 5.336 7 C -0.369 4.369 8 H 0.052 0.948 9 C -0.228 4.228 10 N -0.604 5.604 11 Si 0.780 3.220 12 H -0.194 1.194 13 H -0.246 1.246 14 H -0.186 1.186 15 C 0.009 3.991 16 C 0.035 3.965 17 H 0.110 0.890 18 N -0.341 5.341 19 C 0.379 3.621 20 O -0.441 6.441 21 C -0.444 4.444 22 S 0.455 5.545 23 C -0.248 4.248 24 N -0.207 5.207 25 C 0.026 3.974 26 C -0.138 4.138 27 C -0.199 4.199 28 C -0.175 4.175 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.237 0.763 40 H 0.265 0.735 41 H 0.144 0.856 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.136 0.864 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.500 0.647 -3.635 18.865 hybrid contribution 1.255 0.129 0.158 1.272 sum -17.245 0.776 -3.477 17.609 Atomic orbital electron populations 1.21770 0.92935 1.01927 1.02791 1.21319 0.97077 0.99788 0.92414 0.88542 1.22015 0.94941 1.00555 0.98702 1.21482 0.94769 0.96641 0.87984 1.44343 1.48388 1.39688 1.01142 1.18634 1.10389 1.02467 1.05363 0.94785 1.25880 0.97637 0.98841 1.00441 1.69984 1.34243 1.24155 1.32021 0.85855 0.75455 0.81480 0.79181 1.19442 1.24636 1.18646 1.21426 0.93142 0.96916 0.87598 1.21519 0.94135 0.80951 0.99916 0.89028 1.45762 1.66355 1.14200 1.07779 1.16865 0.77025 0.83866 0.84330 1.90705 1.52575 1.69568 1.31261 1.25467 1.19590 1.01242 0.98147 1.83920 1.56908 1.04849 1.08862 1.29434 0.99813 1.05118 0.90435 1.66010 1.17204 1.17774 1.19677 1.19892 0.94579 0.87307 0.95636 1.20848 1.07702 0.99222 0.86072 1.22942 0.92806 1.01927 1.02241 1.23025 0.96285 1.00620 0.97593 0.93248 0.90548 0.92151 0.88844 0.92710 0.94522 0.93080 0.93069 0.94695 0.93479 0.76329 0.73488 0.85626 0.89835 0.87367 0.86411 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.05 71.98 0.65 -1.95 16 2 C -0.09 -2.15 2.48 -10.77 -0.03 -2.18 16 3 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.12 -3.48 5.20 30.67 0.16 -3.32 16 5 C 0.12 4.47 4.20 86.36 0.36 4.84 16 6 N -0.61 -27.82 2.69 -698.93 -1.88 -29.70 16 7 C -0.24 -13.55 10.04 84.03 0.84 -12.71 16 8 H 0.03 2.22 8.06 -2.91 -0.02 2.20 16 9 C -0.03 -1.94 5.23 84.86 0.44 -1.49 16 10 N -0.96 -60.05 13.97 21.65 0.30 -59.74 16 11 Si 0.95 45.79 24.35 68.60 1.67 47.46 16 12 H -0.27 -11.86 6.62 99.48 0.66 -11.20 16 13 H -0.32 -15.81 7.11 99.48 0.71 -15.10 16 14 H -0.26 -12.06 6.64 99.48 0.66 -11.40 16 15 C 0.14 5.40 6.12 86.35 0.53 5.93 16 16 C 0.14 4.43 2.24 45.07 0.10 4.53 16 17 H 0.09 2.81 7.58 -2.39 -0.02 2.79 16 18 N -0.69 -22.67 4.25 -446.13 -1.90 -24.56 16 19 C 0.59 21.39 7.75 86.45 0.67 22.06 16 20 O -0.56 -22.62 13.99 -4.31 -0.06 -22.68 16 21 C -0.32 -10.36 6.48 23.88 0.15 -10.20 16 22 S 0.20 4.78 22.35 -56.49 -1.26 3.52 16 23 C 0.05 0.97 12.22 130.60 1.60 2.56 16 24 N -0.49 -13.39 9.80 -190.40 -1.87 -15.26 16 25 C 0.16 5.15 6.42 42.10 0.27 5.42 16 26 C -0.12 -3.54 5.43 -11.54 -0.06 -3.60 16 27 C -0.16 -4.34 10.23 30.59 0.31 -4.02 16 28 C -0.14 -3.18 10.08 30.59 0.31 -2.87 16 29 H 0.05 0.98 7.54 -2.39 -0.02 0.96 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.61 6.40 -2.39 -0.02 1.59 16 34 H 0.04 1.36 7.08 -2.39 -0.02 1.34 16 35 H 0.05 2.21 4.50 -2.38 -0.01 2.20 16 36 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.03 1.61 7.93 -2.39 -0.02 1.59 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.40 12.44 5.82 -92.71 -0.54 11.90 16 40 H 0.25 2.63 8.06 -2.91 -0.02 2.60 16 41 H 0.13 4.16 6.19 -2.39 -0.01 4.15 16 42 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 43 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.10 2.38 7.74 -2.39 -0.02 2.36 16 Total: -1.00 -73.63 365.26 1.70 -71.93 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.38 Total: 26.05 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 6.31 Total: 2.99 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -5.34 Total: -129.26 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.06 Total: -22.68 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.67 Total: 47.46 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.26 Total: 3.52 kcal Total: -73.63 1.70 -71.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968399982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.471 kcal (2) G-P(sol) polarization free energy of solvation -73.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds