Wall clock time and date at job start Tue Mar 31 2020 19:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.44601 * 2 1 4 4 C 1.53037 * 109.45928 * 119.97037 * 2 1 3 5 5 C 1.53194 * 109.31345 * 181.38805 * 4 2 1 6 6 N 1.46929 * 108.77194 * 305.36255 * 5 4 2 7 7 C 1.36936 * 120.62970 * 233.58377 * 6 5 4 8 8 H 1.08003 * 119.99758 * 151.84884 * 7 6 5 9 9 C 1.38816 * 120.00184 * 331.85156 * 7 6 5 10 10 N 1.31612 * 119.99500 * 343.06988 * 9 7 6 11 11 Si 1.86794 * 120.00031 * 163.07164 * 9 7 6 12 12 H 1.48502 * 109.47344 * 89.99648 * 11 9 7 13 13 H 1.48498 * 109.47326 * 210.00064 * 11 9 7 14 14 H 1.48506 * 109.47469 * 329.99946 * 11 9 7 15 15 C 1.46927 * 118.73935 * 53.60629 * 6 5 4 16 16 C 1.53041 * 109.45874 * 240.03638 * 2 1 3 17 17 H 1.08996 * 109.50054 * 298.56294 * 16 2 1 18 18 N 1.46503 * 109.52396 * 58.64730 * 16 2 1 19 19 C 1.34777 * 119.99770 * 204.85415 * 18 16 2 20 20 O 1.21690 * 119.99865 * 359.97438 * 19 18 16 21 21 C 1.46679 * 119.99815 * 180.02562 * 19 18 16 22 22 S 1.76213 * 126.13020 * 0.02562 * 21 19 18 23 23 C 1.70959 * 90.31271 * 179.97438 * 22 21 19 24 24 N 1.29432 * 110.39019 * 0.02562 * 23 22 21 25 25 C 1.30939 * 117.36180 * 359.72845 * 24 23 22 26 26 C 1.50699 * 122.89961 * 180.31151 * 25 24 23 27 27 C 1.53003 * 117.50348 * 8.94050 * 26 25 24 28 28 C 1.53001 * 117.50030 * 300.27641 * 26 25 24 29 29 H 1.08995 * 109.46949 * 300.03253 * 1 2 3 30 30 H 1.09000 * 109.46888 * 60.03523 * 1 2 3 31 31 H 1.09004 * 109.47015 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.50004 * 61.43421 * 4 2 1 33 33 H 1.09003 * 109.49949 * 301.33341 * 4 2 1 34 34 H 1.09000 * 109.58764 * 65.14648 * 5 4 2 35 35 H 1.08994 * 109.59162 * 185.43253 * 5 4 2 36 36 H 0.97002 * 119.99590 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.58501 * 66.17955 * 15 6 5 38 38 H 1.09006 * 109.58721 * 186.45972 * 15 6 5 39 39 H 0.96993 * 120.00075 * 24.85005 * 18 16 2 40 40 H 1.07998 * 124.80205 * 179.97438 * 23 22 21 41 41 H 1.09008 * 115.55164 * 154.60924 * 26 25 24 42 42 H 1.08998 * 117.49326 * 359.97438 * 27 26 25 43 43 H 1.08992 * 117.50280 * 145.01979 * 27 26 25 44 44 H 1.09000 * 117.49989 * 214.98236 * 28 26 25 45 45 H 1.08998 * 117.49927 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6886 1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9765 -2.2733 -0.0001 8 1 5.0044 -2.9702 -0.8247 9 6 5.8615 -2.4162 1.0597 10 7 6.0659 -1.4125 1.8862 11 14 6.7623 -4.0329 1.3128 12 1 8.0467 -4.0059 0.5680 13 1 7.0332 -4.2274 2.7599 14 1 5.9231 -5.1510 0.8118 15 6 3.5713 -0.6885 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6979 -1.7556 -1.2384 18 7 1.5256 -0.0492 -2.4464 19 6 1.4002 -0.7326 -3.6013 20 8 1.7146 -1.9071 -3.6505 21 6 0.8858 -0.0602 -4.7991 22 16 0.3868 1.6262 -4.9105 23 6 -0.0040 1.4113 -6.5609 24 7 0.2345 0.1926 -6.9258 25 6 0.7137 -0.6237 -6.0210 26 6 1.0425 -2.0655 -6.3113 27 6 0.9978 -2.5202 -7.7715 28 6 -0.0954 -2.9657 -6.7969 29 1 -0.3633 0.5143 0.8897 30 1 -0.3633 0.5133 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6978 -1.7557 1.2382 33 1 1.6573 -0.2208 2.1398 34 1 3.9143 0.3409 1.3674 35 1 3.9417 -1.2825 2.0998 36 1 6.6846 -1.5123 2.6266 37 1 3.9143 0.3410 -1.3674 38 1 3.9438 -1.2830 -2.0987 39 1 1.2753 0.8870 -2.4072 40 1 -0.3953 2.1830 -7.2072 41 1 1.7993 -2.5139 -5.6676 42 1 0.7300 -1.7766 -8.5222 43 1 1.7247 -3.2679 -8.0883 44 1 -0.0870 -4.0064 -6.4729 45 1 -1.0819 -2.5152 -6.9059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968399983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:29 Heat of formation + Delta-G solvation = 54.215215 kcal Electronic energy + Delta-G solvation = -26990.768887 eV Core-core repulsion = 23329.418972 eV Total energy + Delta-G solvation = -3661.349915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.64349 -39.44519 -37.58035 -36.55702 -34.51644 -33.07931 -31.19320 -30.90581 -28.95057 -27.39853 -26.17631 -24.12541 -23.28216 -22.50996 -22.37134 -21.24922 -20.89205 -19.91643 -18.97686 -18.17534 -17.04227 -16.71454 -15.99308 -15.50286 -15.33554 -14.83685 -14.58565 -14.48659 -14.24581 -13.84452 -13.73243 -13.46200 -13.36885 -13.18023 -12.50139 -12.46363 -12.07241 -11.75512 -11.64780 -11.57774 -11.51906 -11.05679 -10.88606 -10.77925 -10.69500 -10.47914 -10.28111 -10.20416 -10.17394 -9.91168 -9.84861 -9.76261 -9.66022 -9.50525 -8.96986 -8.81551 -8.40367 -6.66897 -5.78205 -3.20500 0.04549 0.95301 1.32035 2.23857 3.16266 3.22545 3.40118 3.46792 3.51157 3.80148 3.98265 4.50694 4.53583 4.72754 4.86524 4.96939 5.07017 5.10818 5.26071 5.32021 5.37059 5.45974 5.58892 5.59426 5.71637 5.86760 5.91502 5.93726 6.02776 6.08743 6.13330 6.19547 6.23519 6.27683 6.52443 6.60373 6.63846 6.70794 6.81121 6.96723 7.33402 7.35331 7.61670 7.64435 7.83726 8.27712 8.46509 9.22537 9.84598 10.40346 11.30638 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014039 B = 0.003316 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.930352 B = 8442.928258 C = 9669.775500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.133 4.133 5 C 0.168 3.832 6 N -0.586 5.586 7 C -0.251 4.251 8 H 0.066 0.934 9 C 0.003 3.997 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.142 3.858 16 C 0.134 3.866 17 H 0.090 0.910 18 N -0.713 5.713 19 C 0.592 3.408 20 O -0.514 6.514 21 C -0.278 4.278 22 S 0.157 5.843 23 C 0.032 3.968 24 N -0.471 5.471 25 C 0.170 3.830 26 C -0.097 4.097 27 C -0.164 4.164 28 C -0.157 4.157 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.089 0.911 36 H 0.253 0.747 37 H 0.017 0.983 38 H 0.059 0.941 39 H 0.391 0.609 40 H 0.205 0.795 41 H 0.146 0.854 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.525 7.777 -13.585 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.042 3.958 6 N -0.309 5.309 7 C -0.381 4.381 8 H 0.084 0.916 9 C -0.195 4.195 10 N -0.548 5.548 11 Si 0.732 3.268 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.204 1.204 15 C 0.014 3.986 16 C 0.029 3.971 17 H 0.108 0.892 18 N -0.363 5.363 19 C 0.377 3.623 20 O -0.391 6.391 21 C -0.402 4.402 22 S 0.412 5.588 23 C -0.264 4.264 24 N -0.184 5.184 25 C 0.033 3.967 26 C -0.117 4.117 27 C -0.201 4.201 28 C -0.195 4.195 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.225 0.775 40 H 0.222 0.778 41 H 0.163 0.837 42 H 0.121 0.879 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.341 7.701 -13.314 21.724 hybrid contribution 0.497 -0.804 -0.046 0.947 sum -14.844 6.896 -13.361 21.128 Atomic orbital electron populations 1.21861 0.95974 1.01651 1.00715 1.21316 0.94592 0.99705 0.95447 0.91445 1.22248 1.00686 0.99577 0.94756 1.20839 0.87279 0.97324 0.90372 1.43981 1.48069 1.39808 0.99045 1.19208 1.09498 1.02716 1.06632 0.91586 1.25021 0.97155 0.97487 0.99842 1.70033 1.37523 1.29037 1.18240 0.86300 0.79691 0.83815 0.77033 1.21381 1.21557 1.20374 1.21188 0.89893 0.96715 0.90823 1.21846 0.96854 0.97011 0.81430 0.89213 1.46038 1.65932 1.13917 1.10411 1.16622 0.78163 0.86141 0.81421 1.90817 1.49738 1.15021 1.83552 1.25587 1.16645 0.97561 1.00405 1.83928 1.56667 1.07872 1.10300 1.28635 1.02620 0.97344 0.97782 1.65965 1.15100 1.02253 1.35128 1.19733 0.94522 0.96040 0.86375 1.20939 1.03847 0.87793 0.99157 1.22993 1.01737 1.03292 0.92084 1.22918 0.93988 0.99486 1.03080 0.92836 0.93547 0.92829 0.92342 0.92646 0.96335 0.89242 0.93668 0.96523 0.92262 0.77509 0.77830 0.83669 0.87932 0.88395 0.88093 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.02 37.16 0.34 -1.52 16 2 C -0.09 -1.44 2.27 -90.58 -0.21 -1.64 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.13 -2.42 5.36 -26.61 -0.14 -2.57 16 5 C 0.17 3.90 5.30 -3.71 -0.02 3.88 16 6 N -0.59 -14.77 2.99 -172.32 -0.52 -15.28 16 7 C -0.25 -7.02 9.58 -15.06 -0.14 -7.17 16 8 H 0.07 1.86 7.89 -52.48 -0.41 1.45 16 9 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 10 N -0.90 -26.15 11.19 55.49 0.62 -25.53 16 11 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.14 3.06 6.09 -3.71 -0.02 3.04 16 16 C 0.13 2.36 2.06 -67.81 -0.14 2.22 16 17 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 18 N -0.71 -10.43 4.37 -55.00 -0.24 -10.67 16 19 C 0.59 9.40 7.75 -12.85 -0.10 9.30 16 20 O -0.51 -9.87 13.99 5.20 0.07 -9.80 16 21 C -0.28 -3.67 6.48 -37.10 -0.24 -3.91 16 22 S 0.16 1.39 22.35 -107.50 -2.40 -1.01 16 23 C 0.03 0.27 12.22 51.75 0.63 0.90 16 24 N -0.47 -5.49 9.81 -11.53 -0.11 -5.60 16 25 C 0.17 2.27 6.41 -83.90 -0.54 1.73 16 26 C -0.10 -1.29 5.44 -91.77 -0.50 -1.79 16 27 C -0.16 -1.78 10.09 -26.69 -0.27 -2.05 16 28 C -0.16 -1.76 10.24 -26.69 -0.27 -2.03 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.53 7.35 -51.93 -0.38 0.15 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 1.38 7.93 -51.93 -0.41 0.96 16 39 H 0.39 4.68 7.49 -40.82 -0.31 4.37 16 40 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.15 2.24 6.17 -51.92 -0.32 1.92 16 42 H 0.10 1.11 7.74 -51.93 -0.40 0.71 16 43 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -31.89 374.84 -10.40 -42.29 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.73 Total: 4.61 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.71 Total: -1.61 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.25 Total: -57.08 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.40 Total: -1.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.89 -10.40 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968399983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.502 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds