Wall clock time and date at job start Tue Mar 31 2020 19:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.44601 * 2 1 4 4 C 1.53037 * 109.45928 * 119.97037 * 2 1 3 5 5 C 1.53194 * 109.31345 * 181.38805 * 4 2 1 6 6 N 1.46929 * 108.77194 * 305.36255 * 5 4 2 7 7 C 1.36936 * 120.62970 * 233.58377 * 6 5 4 8 8 H 1.08003 * 119.99758 * 151.84884 * 7 6 5 9 9 C 1.38816 * 120.00184 * 331.85156 * 7 6 5 10 10 N 1.31612 * 119.99500 * 343.06988 * 9 7 6 11 11 Si 1.86794 * 120.00031 * 163.07164 * 9 7 6 12 12 H 1.48502 * 109.47344 * 89.99648 * 11 9 7 13 13 H 1.48498 * 109.47326 * 210.00064 * 11 9 7 14 14 H 1.48506 * 109.47469 * 329.99946 * 11 9 7 15 15 C 1.46927 * 118.73935 * 53.60629 * 6 5 4 16 16 C 1.53041 * 109.45874 * 240.03638 * 2 1 3 17 17 H 1.08996 * 109.50054 * 298.56294 * 16 2 1 18 18 N 1.46503 * 109.52396 * 58.64730 * 16 2 1 19 19 C 1.34777 * 119.99770 * 204.85415 * 18 16 2 20 20 O 1.21690 * 119.99865 * 359.97438 * 19 18 16 21 21 C 1.46679 * 119.99815 * 180.02562 * 19 18 16 22 22 S 1.76213 * 126.13020 * 0.02562 * 21 19 18 23 23 C 1.70959 * 90.31271 * 179.97438 * 22 21 19 24 24 N 1.29432 * 110.39019 * 0.02562 * 23 22 21 25 25 C 1.30939 * 117.36180 * 359.72845 * 24 23 22 26 26 C 1.50699 * 122.89961 * 180.31151 * 25 24 23 27 27 C 1.53003 * 117.50348 * 8.94050 * 26 25 24 28 28 C 1.53001 * 117.50030 * 300.27641 * 26 25 24 29 29 H 1.08995 * 109.46949 * 300.03253 * 1 2 3 30 30 H 1.09000 * 109.46888 * 60.03523 * 1 2 3 31 31 H 1.09004 * 109.47015 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.50004 * 61.43421 * 4 2 1 33 33 H 1.09003 * 109.49949 * 301.33341 * 4 2 1 34 34 H 1.09000 * 109.58764 * 65.14648 * 5 4 2 35 35 H 1.08994 * 109.59162 * 185.43253 * 5 4 2 36 36 H 0.97002 * 119.99590 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.58501 * 66.17955 * 15 6 5 38 38 H 1.09006 * 109.58721 * 186.45972 * 15 6 5 39 39 H 0.96993 * 120.00075 * 24.85005 * 18 16 2 40 40 H 1.07998 * 124.80205 * 179.97438 * 23 22 21 41 41 H 1.09008 * 115.55164 * 154.60924 * 26 25 24 42 42 H 1.08998 * 117.49326 * 359.97438 * 27 26 25 43 43 H 1.08992 * 117.50280 * 145.01979 * 27 26 25 44 44 H 1.09000 * 117.49989 * 214.98236 * 28 26 25 45 45 H 1.08998 * 117.49927 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6886 1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9765 -2.2733 -0.0001 8 1 5.0044 -2.9702 -0.8247 9 6 5.8615 -2.4162 1.0597 10 7 6.0659 -1.4125 1.8862 11 14 6.7623 -4.0329 1.3128 12 1 8.0467 -4.0059 0.5680 13 1 7.0332 -4.2274 2.7599 14 1 5.9231 -5.1510 0.8118 15 6 3.5713 -0.6885 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6979 -1.7556 -1.2384 18 7 1.5256 -0.0492 -2.4464 19 6 1.4002 -0.7326 -3.6013 20 8 1.7146 -1.9071 -3.6505 21 6 0.8858 -0.0602 -4.7991 22 16 0.3868 1.6262 -4.9105 23 6 -0.0040 1.4113 -6.5609 24 7 0.2345 0.1926 -6.9258 25 6 0.7137 -0.6237 -6.0210 26 6 1.0425 -2.0655 -6.3113 27 6 0.9978 -2.5202 -7.7715 28 6 -0.0954 -2.9657 -6.7969 29 1 -0.3633 0.5143 0.8897 30 1 -0.3633 0.5133 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6978 -1.7557 1.2382 33 1 1.6573 -0.2208 2.1398 34 1 3.9143 0.3409 1.3674 35 1 3.9417 -1.2825 2.0998 36 1 6.6846 -1.5123 2.6266 37 1 3.9143 0.3410 -1.3674 38 1 3.9438 -1.2830 -2.0987 39 1 1.2753 0.8870 -2.4072 40 1 -0.3953 2.1830 -7.2072 41 1 1.7993 -2.5139 -5.6676 42 1 0.7300 -1.7766 -8.5222 43 1 1.7247 -3.2679 -8.0883 44 1 -0.0870 -4.0064 -6.4729 45 1 -1.0819 -2.5152 -6.9059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968399983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:28 Heat of formation + Delta-G solvation = 34.235224 kcal Electronic energy + Delta-G solvation = -26991.635284 eV Core-core repulsion = 23329.418972 eV Total energy + Delta-G solvation = -3662.216312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.64670 -40.67797 -39.07461 -37.45701 -36.21862 -34.56595 -33.05700 -32.03451 -30.41656 -28.98508 -27.17161 -25.89335 -24.45683 -23.68855 -23.26636 -22.76394 -22.27394 -21.36074 -20.20825 -19.09821 -18.71404 -18.00529 -17.18563 -16.88591 -16.57131 -16.33975 -15.82388 -15.54179 -15.46561 -15.30279 -15.20378 -14.86695 -14.78408 -14.50543 -14.18139 -13.61261 -13.35533 -13.23283 -13.15005 -12.75732 -12.69184 -12.62319 -12.42652 -12.34316 -12.05251 -11.96407 -11.77658 -11.69690 -11.51203 -11.33778 -11.29362 -11.11665 -10.69467 -10.65661 -10.59574 -10.18247 -9.71982 -8.70779 -7.92193 -5.37825 -0.80419 0.16306 0.53612 1.34715 1.43277 1.44395 1.55266 1.96028 2.04846 2.49334 2.95525 3.13961 3.22481 3.55768 3.68788 3.70459 3.89307 3.96080 3.98410 4.08482 4.10606 4.22372 4.41800 4.45147 4.50306 4.63117 4.72000 4.74401 4.84598 4.89728 4.92850 5.01220 5.03245 5.05870 5.12815 5.19074 5.21538 5.28237 5.40506 5.43729 5.52489 5.61502 5.75810 6.34889 6.38330 6.56936 7.08621 7.12429 7.80317 8.30671 9.13665 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014039 B = 0.003316 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.930352 B = 8442.928258 C = 9669.775500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 H 0.081 0.919 4 C -0.122 4.122 5 C 0.173 3.827 6 N -0.605 5.605 7 C -0.270 4.270 8 H 0.052 0.948 9 C -0.041 4.041 10 N -0.928 5.928 11 Si 0.964 3.036 12 H -0.284 1.284 13 H -0.284 1.284 14 H -0.276 1.276 15 C 0.145 3.855 16 C 0.152 3.848 17 H 0.061 0.939 18 N -0.701 5.701 19 C 0.591 3.409 20 O -0.559 6.559 21 C -0.324 4.324 22 S 0.224 5.776 23 C 0.050 3.950 24 N -0.496 5.496 25 C 0.170 3.830 26 C -0.126 4.126 27 C -0.147 4.147 28 C -0.149 4.149 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.005 0.995 35 H 0.055 0.945 36 H 0.253 0.747 37 H 0.019 0.981 38 H 0.030 0.970 39 H 0.408 0.592 40 H 0.251 0.749 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.860 9.912 -14.665 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.103 4.103 3 H 0.099 0.901 4 C -0.161 4.161 5 C 0.047 3.953 6 N -0.329 5.329 7 C -0.400 4.400 8 H 0.070 0.930 9 C -0.237 4.237 10 N -0.573 5.573 11 Si 0.792 3.208 12 H -0.210 1.210 13 H -0.210 1.210 14 H -0.201 1.201 15 C 0.017 3.983 16 C 0.046 3.954 17 H 0.079 0.921 18 N -0.352 5.352 19 C 0.377 3.623 20 O -0.439 6.439 21 C -0.448 4.448 22 S 0.480 5.520 23 C -0.245 4.245 24 N -0.210 5.210 25 C 0.032 3.968 26 C -0.147 4.147 27 C -0.184 4.184 28 C -0.187 4.187 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.049 0.951 39 H 0.245 0.755 40 H 0.267 0.733 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.711 9.894 -14.403 24.880 hybrid contribution 1.234 -1.372 0.188 1.855 sum -16.477 8.522 -14.214 23.370 Atomic orbital electron populations 1.21781 0.92855 1.01810 1.02840 1.21254 0.97020 0.99409 0.92603 0.90059 1.22077 0.96653 0.99875 0.97527 1.20711 0.90663 0.95419 0.88457 1.44197 1.48222 1.39745 1.00743 1.19378 1.10411 1.03580 1.06630 0.93006 1.25703 0.98017 1.00408 0.99575 1.70158 1.38105 1.30547 1.18536 0.85338 0.78416 0.80109 0.76965 1.21049 1.20973 1.20120 1.21206 0.92770 0.95735 0.88545 1.21322 0.93769 0.96476 0.83853 0.92060 1.45763 1.65588 1.14549 1.09307 1.17029 0.77251 0.85748 0.82230 1.90796 1.51565 1.17178 1.84396 1.25338 1.19376 1.00849 0.99223 1.83625 1.55049 1.03444 1.09864 1.29501 0.99592 0.97043 0.98333 1.66023 1.16733 1.03323 1.34904 1.19785 0.94104 0.96139 0.86817 1.20845 1.04559 0.88914 1.00345 1.23030 1.01438 1.03118 0.90821 1.22957 0.93822 0.99329 1.02552 0.90549 0.91587 0.93701 0.93446 0.89674 0.97703 0.92629 0.93813 0.96269 0.95143 0.75540 0.73331 0.86757 0.87431 0.87400 0.87663 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.02 71.98 0.65 -2.41 16 2 C -0.08 -2.51 2.27 -10.77 -0.02 -2.53 16 3 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 4 C -0.12 -4.37 5.36 30.67 0.16 -4.21 16 5 C 0.17 8.27 5.30 86.36 0.46 8.72 16 6 N -0.61 -31.84 2.99 -699.08 -2.09 -33.93 16 7 C -0.27 -15.81 9.58 84.03 0.81 -15.01 16 8 H 0.05 3.11 7.89 -2.91 -0.02 3.08 16 9 C -0.04 -2.36 4.92 84.86 0.42 -1.94 16 10 N -0.93 -55.25 11.19 21.65 0.24 -55.01 16 11 Si 0.96 46.47 29.59 68.60 2.03 48.50 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 13 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 15 C 0.14 6.54 6.09 86.36 0.53 7.06 16 16 C 0.15 5.45 2.06 45.07 0.09 5.55 16 17 H 0.06 2.59 7.58 -2.39 -0.02 2.57 16 18 N -0.70 -20.26 4.37 -446.13 -1.95 -22.21 16 19 C 0.59 19.21 7.75 86.45 0.67 19.88 16 20 O -0.56 -22.97 13.99 -4.32 -0.06 -23.04 16 21 C -0.32 -8.35 6.48 23.88 0.15 -8.19 16 22 S 0.22 3.23 22.35 -56.49 -1.26 1.96 16 23 C 0.05 0.65 12.22 130.60 1.60 2.24 16 24 N -0.50 -10.45 9.81 -190.40 -1.87 -12.32 16 25 C 0.17 4.45 6.41 42.09 0.27 4.72 16 26 C -0.13 -3.48 5.44 -11.54 -0.06 -3.54 16 27 C -0.15 -3.14 10.09 30.62 0.31 -2.83 16 28 C -0.15 -3.33 10.24 30.62 0.31 -3.02 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.25 7.35 -2.39 -0.02 1.23 16 31 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.06 3.02 6.06 -2.39 -0.01 3.01 16 36 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.03 1.51 7.93 -2.38 -0.02 1.49 16 39 H 0.41 8.92 7.49 -92.71 -0.69 8.23 16 40 H 0.25 0.73 8.06 -2.91 -0.02 0.70 16 41 H 0.11 3.86 6.17 -2.38 -0.01 3.85 16 42 H 0.11 2.20 7.74 -2.39 -0.02 2.18 16 43 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -74.64 374.84 1.69 -72.94 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.31 Total: 18.62 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 6.34 Total: 4.48 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -5.67 Total: -123.47 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.06 Total: -23.04 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -1.26 Total: 1.96 kcal Total: -74.64 1.69 -72.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968399983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.179 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds