Wall clock time and date at job start Tue Mar 31 2020 19:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45907 * 2 1 4 4 C 1.53348 * 109.42186 * 240.09131 * 2 1 3 5 5 C 1.53188 * 109.14862 * 178.67600 * 4 2 1 6 6 N 1.46927 * 108.89428 * 54.57993 * 5 4 2 7 7 C 1.36933 * 120.63022 * 126.33925 * 6 5 4 8 8 H 1.08000 * 120.00191 * 331.82823 * 7 6 5 9 9 C 1.38816 * 120.00216 * 151.82741 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07025 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07047 * 9 7 6 12 12 H 1.48493 * 109.47484 * 90.00085 * 11 9 7 13 13 H 1.48503 * 109.47169 * 210.00310 * 11 9 7 14 14 H 1.48506 * 109.47138 * 329.99723 * 11 9 7 15 15 C 1.46927 * 118.73625 * 306.32307 * 6 5 4 16 16 C 1.53047 * 109.45598 * 119.96396 * 2 1 3 17 17 H 1.08998 * 109.49511 * 61.43649 * 16 2 1 18 18 N 1.46500 * 109.52372 * 301.35896 * 16 2 1 19 19 C 1.34775 * 119.99842 * 155.15123 * 18 16 2 20 20 O 1.21688 * 120.00246 * 359.97438 * 19 18 16 21 21 C 1.46681 * 119.99871 * 179.97438 * 19 18 16 22 22 S 1.76212 * 126.13322 * 359.68277 * 21 19 18 23 23 C 1.70949 * 90.31808 * 179.97438 * 22 21 19 24 24 N 1.29433 * 110.38548 * 0.35097 * 23 22 21 25 25 C 1.30940 * 117.36625 * 359.71874 * 24 23 22 26 26 C 1.50703 * 122.90365 * 179.97438 * 25 24 23 27 27 C 1.53000 * 117.49793 * 8.79612 * 26 25 24 28 28 C 1.52995 * 117.50257 * 300.13574 * 26 25 24 29 29 H 1.08999 * 109.47631 * 300.03785 * 1 2 3 30 30 H 1.09003 * 109.46594 * 60.03773 * 1 2 3 31 31 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.68200 * 58.71226 * 4 2 1 33 33 H 1.08993 * 109.47490 * 298.51759 * 4 2 1 34 34 H 1.09007 * 109.58820 * 294.72168 * 5 4 2 35 35 H 1.09000 * 109.58865 * 174.43884 * 5 4 2 36 36 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.58424 * 173.39841 * 15 6 5 38 38 H 1.08997 * 109.58254 * 293.81449 * 15 6 5 39 39 H 0.97001 * 120.00100 * 335.14305 * 18 16 2 40 40 H 1.07998 * 124.80996 * 180.02562 * 23 22 21 41 41 H 1.08999 * 115.54654 * 154.45514 * 26 25 24 42 42 H 1.09002 * 117.49726 * 359.97438 * 27 26 25 43 43 H 1.09004 * 117.50192 * 145.01740 * 27 26 25 44 44 H 1.09000 * 117.50234 * 214.98096 * 28 26 25 45 45 H 1.09007 * 117.49497 * 359.97131 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2536 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2488 0.0002 7 6 4.9764 -2.2733 0.0003 8 1 5.0044 -2.9703 -0.8243 9 6 5.8614 -2.4163 1.0601 10 7 6.0658 -1.4124 1.8866 11 14 6.7621 -4.0329 1.3134 12 1 8.0466 -4.0060 0.5688 13 1 7.0329 -4.2273 2.7606 14 1 5.9228 -5.1510 0.8124 15 6 3.5712 -0.6886 1.2644 16 6 2.0398 -0.7208 1.2502 17 1 1.6977 -1.7556 1.2384 18 7 1.5254 -0.0494 2.4464 19 6 1.4000 -0.7327 3.6013 20 8 1.7137 -1.9074 3.6503 21 6 0.8854 -0.0604 4.7991 22 16 0.3929 1.6277 4.9124 23 6 -0.0041 1.4111 6.5610 24 7 0.2357 0.1928 6.9262 25 6 0.7100 -0.6249 6.0201 26 6 1.0338 -2.0681 6.3089 27 6 0.5999 -2.6320 7.6634 28 6 2.0799 -2.3553 7.3877 29 1 -0.3634 0.5144 0.8896 30 1 -0.3632 0.5133 -0.8904 31 1 -0.3634 -1.0277 0.0005 32 1 1.6593 -0.2219 -2.1447 33 1 1.6981 -1.7560 -1.2419 34 1 3.9144 0.3410 -1.3671 35 1 3.9439 -1.2830 -2.0984 36 1 6.6845 -1.5121 2.6270 37 1 3.9415 -1.2845 2.0986 38 1 3.9142 0.3409 1.3675 39 1 1.2751 0.8870 2.4072 40 1 -0.3943 2.1830 7.2077 41 1 0.9991 -2.7386 5.4502 42 1 0.0807 -1.9590 8.3458 43 1 0.2803 -3.6737 7.6960 44 1 2.7335 -3.2148 7.2390 45 1 2.5344 -1.5002 7.8883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968399985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:35 Heat of formation + Delta-G solvation = 54.935612 kcal Electronic energy + Delta-G solvation = -27385.889177 eV Core-core repulsion = 23724.570501 eV Total energy + Delta-G solvation = -3661.318676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.49375 -39.28778 -37.49662 -36.41945 -34.37348 -33.15436 -31.06750 -30.79695 -28.85059 -27.39381 -26.08244 -24.08998 -23.21236 -22.41478 -22.23477 -21.20539 -20.76842 -19.79764 -18.90887 -18.03884 -16.91261 -16.73562 -15.83889 -15.41137 -15.17514 -14.75051 -14.60821 -14.34067 -13.94343 -13.75380 -13.72964 -13.51919 -13.34663 -13.01575 -12.43477 -12.33337 -12.07382 -11.69007 -11.61710 -11.56582 -11.43596 -10.90443 -10.76011 -10.68722 -10.66102 -10.47356 -10.33541 -10.17118 -10.05364 -9.97051 -9.88485 -9.63037 -9.52197 -9.41733 -8.80862 -8.55931 -8.42361 -6.65132 -5.75245 -3.18645 0.18608 1.08267 1.44922 2.37790 3.32203 3.42240 3.44405 3.50144 3.52673 3.93948 4.10694 4.54563 4.66668 4.85552 5.01199 5.11353 5.16646 5.20832 5.23804 5.37918 5.44890 5.51733 5.59116 5.73455 5.86131 5.88680 5.98041 6.00473 6.05009 6.09837 6.21917 6.23560 6.34634 6.36500 6.44310 6.50491 6.70699 6.73989 6.88122 6.95863 7.26482 7.47547 7.71809 7.78984 7.85651 8.46387 8.50900 9.23308 9.87289 10.42170 11.32885 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.004454 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.850517 B = 6284.425113 C = 8149.295008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.257 4.257 8 H 0.066 0.934 9 C 0.008 3.992 10 N -0.899 5.899 11 Si 0.901 3.099 12 H -0.287 1.287 13 H -0.289 1.289 14 H -0.278 1.278 15 C 0.167 3.833 16 C 0.125 3.875 17 H 0.085 0.915 18 N -0.711 5.711 19 C 0.592 3.408 20 O -0.510 6.510 21 C -0.273 4.273 22 S 0.155 5.845 23 C 0.029 3.971 24 N -0.470 5.470 25 C 0.168 3.832 26 C -0.096 4.096 27 C -0.165 4.165 28 C -0.155 4.155 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.056 0.944 36 H 0.254 0.746 37 H 0.096 0.904 38 H 0.017 0.983 39 H 0.389 0.611 40 H 0.204 0.796 41 H 0.145 0.855 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.926 7.825 6.410 18.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.085 0.915 4 C -0.164 4.164 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.387 4.387 8 H 0.084 0.916 9 C -0.191 4.191 10 N -0.542 5.542 11 Si 0.731 3.269 12 H -0.214 1.214 13 H -0.215 1.215 14 H -0.204 1.204 15 C 0.039 3.961 16 C 0.020 3.980 17 H 0.103 0.897 18 N -0.361 5.361 19 C 0.375 3.625 20 O -0.387 6.387 21 C -0.397 4.397 22 S 0.409 5.591 23 C -0.267 4.267 24 N -0.184 5.184 25 C 0.031 3.969 26 C -0.116 4.116 27 C -0.203 4.203 28 C -0.193 4.193 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.035 0.965 39 H 0.222 0.778 40 H 0.221 0.779 41 H 0.162 0.838 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.731 7.746 6.427 17.841 hybrid contribution 0.529 -0.807 0.467 1.072 sum -14.202 6.939 6.894 17.245 Atomic orbital electron populations 1.21857 0.95986 1.01635 1.00720 1.21370 0.94587 0.99705 0.95534 0.91469 1.22119 0.98956 1.00054 0.95308 1.20964 0.90809 0.96494 0.90208 1.43942 1.48057 1.39877 0.99105 1.19127 1.09570 1.03128 1.06861 0.91632 1.25032 0.97092 0.97362 0.99639 1.70010 1.37178 1.29073 1.17967 0.86321 0.79482 0.83903 0.77209 1.21436 1.21497 1.20368 1.21097 0.86273 0.97533 0.91154 1.22072 0.98506 0.96419 0.81002 0.89657 1.45970 1.65939 1.13687 1.10492 1.16592 0.78265 0.86236 0.81365 1.90826 1.49171 1.15106 1.83591 1.25627 1.16194 0.97251 1.00594 1.83865 1.56723 1.07973 1.10507 1.28598 1.02926 0.97346 0.97819 1.65952 1.15092 1.02231 1.35113 1.19718 0.94798 0.95978 0.86383 1.20912 1.05621 0.89854 0.95245 1.22985 0.97696 1.01589 0.97992 1.22923 0.92087 1.03419 1.00873 0.93370 0.93014 0.92842 0.92509 0.92047 0.96438 0.92589 0.93649 0.88600 0.96510 0.77772 0.77917 0.83772 0.88006 0.88554 0.88011 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.02 37.16 0.34 -1.52 16 2 C -0.09 -1.46 2.27 -90.41 -0.21 -1.67 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.12 -2.07 5.39 -26.45 -0.14 -2.21 16 5 C 0.14 2.90 6.50 -3.71 -0.02 2.87 16 6 N -0.59 -14.78 2.99 -172.32 -0.52 -15.30 16 7 C -0.26 -7.19 9.58 -15.06 -0.14 -7.34 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 C 0.01 0.23 4.92 -17.43 -0.09 0.14 16 10 N -0.90 -26.78 11.20 55.49 0.62 -26.16 16 11 Si 0.90 22.49 29.59 -169.99 -5.03 17.46 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.17 4.03 4.88 -3.71 -0.02 4.01 16 16 C 0.12 2.40 2.06 -67.81 -0.14 2.26 16 17 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 18 N -0.71 -11.78 4.37 -55.00 -0.24 -12.02 16 19 C 0.59 10.71 7.75 -12.85 -0.10 10.61 16 20 O -0.51 -11.11 13.98 5.20 0.07 -11.04 16 21 C -0.27 -4.12 6.48 -37.10 -0.24 -4.36 16 22 S 0.15 1.60 22.35 -107.50 -2.40 -0.81 16 23 C 0.03 0.28 12.22 51.75 0.63 0.92 16 24 N -0.47 -6.18 9.81 -11.53 -0.11 -6.29 16 25 C 0.17 2.53 6.41 -83.89 -0.54 2.00 16 26 C -0.10 -1.46 5.44 -91.77 -0.50 -1.96 16 27 C -0.17 -2.04 10.09 -26.69 -0.27 -2.31 16 28 C -0.16 -2.13 10.24 -26.70 -0.27 -2.40 16 29 H 0.05 0.57 7.36 -51.93 -0.38 0.18 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 36 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.10 2.74 6.06 -51.93 -0.31 2.43 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.39 5.31 7.49 -40.82 -0.31 5.00 16 40 H 0.20 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.14 2.47 6.17 -51.93 -0.32 2.15 16 42 H 0.10 1.23 7.74 -51.93 -0.40 0.83 16 43 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -32.81 374.86 -10.40 -43.21 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.73 Total: 6.26 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.71 Total: -0.96 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.25 Total: -59.77 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.40 Total: -0.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.81 -10.40 -43.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968399985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.146 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds