Wall clock time and date at job start Tue Mar 31 2020 19:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45907 * 2 1 4 4 C 1.53348 * 109.42186 * 240.09131 * 2 1 3 5 5 C 1.53188 * 109.14862 * 178.67600 * 4 2 1 6 6 N 1.46927 * 108.89428 * 54.57993 * 5 4 2 7 7 C 1.36933 * 120.63022 * 126.33925 * 6 5 4 8 8 H 1.08000 * 120.00191 * 331.82823 * 7 6 5 9 9 C 1.38816 * 120.00216 * 151.82741 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07025 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07047 * 9 7 6 12 12 H 1.48493 * 109.47484 * 90.00085 * 11 9 7 13 13 H 1.48503 * 109.47169 * 210.00310 * 11 9 7 14 14 H 1.48506 * 109.47138 * 329.99723 * 11 9 7 15 15 C 1.46927 * 118.73625 * 306.32307 * 6 5 4 16 16 C 1.53047 * 109.45598 * 119.96396 * 2 1 3 17 17 H 1.08998 * 109.49511 * 61.43649 * 16 2 1 18 18 N 1.46500 * 109.52372 * 301.35896 * 16 2 1 19 19 C 1.34775 * 119.99842 * 155.15123 * 18 16 2 20 20 O 1.21688 * 120.00246 * 359.97438 * 19 18 16 21 21 C 1.46681 * 119.99871 * 179.97438 * 19 18 16 22 22 S 1.76212 * 126.13322 * 359.68277 * 21 19 18 23 23 C 1.70949 * 90.31808 * 179.97438 * 22 21 19 24 24 N 1.29433 * 110.38548 * 0.35097 * 23 22 21 25 25 C 1.30940 * 117.36625 * 359.71874 * 24 23 22 26 26 C 1.50703 * 122.90365 * 179.97438 * 25 24 23 27 27 C 1.53000 * 117.49793 * 8.79612 * 26 25 24 28 28 C 1.52995 * 117.50257 * 300.13574 * 26 25 24 29 29 H 1.08999 * 109.47631 * 300.03785 * 1 2 3 30 30 H 1.09003 * 109.46594 * 60.03773 * 1 2 3 31 31 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.68200 * 58.71226 * 4 2 1 33 33 H 1.08993 * 109.47490 * 298.51759 * 4 2 1 34 34 H 1.09007 * 109.58820 * 294.72168 * 5 4 2 35 35 H 1.09000 * 109.58865 * 174.43884 * 5 4 2 36 36 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.58424 * 173.39841 * 15 6 5 38 38 H 1.08997 * 109.58254 * 293.81449 * 15 6 5 39 39 H 0.97001 * 120.00100 * 335.14305 * 18 16 2 40 40 H 1.07998 * 124.80996 * 180.02562 * 23 22 21 41 41 H 1.08999 * 115.54654 * 154.45514 * 26 25 24 42 42 H 1.09002 * 117.49726 * 359.97438 * 27 26 25 43 43 H 1.09004 * 117.50192 * 145.01740 * 27 26 25 44 44 H 1.09000 * 117.50234 * 214.98096 * 28 26 25 45 45 H 1.09007 * 117.49497 * 359.97131 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2536 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2488 0.0002 7 6 4.9764 -2.2733 0.0003 8 1 5.0044 -2.9703 -0.8243 9 6 5.8614 -2.4163 1.0601 10 7 6.0658 -1.4124 1.8866 11 14 6.7621 -4.0329 1.3134 12 1 8.0466 -4.0060 0.5688 13 1 7.0329 -4.2273 2.7606 14 1 5.9228 -5.1510 0.8124 15 6 3.5712 -0.6886 1.2644 16 6 2.0398 -0.7208 1.2502 17 1 1.6977 -1.7556 1.2384 18 7 1.5254 -0.0494 2.4464 19 6 1.4000 -0.7327 3.6013 20 8 1.7137 -1.9074 3.6503 21 6 0.8854 -0.0604 4.7991 22 16 0.3929 1.6277 4.9124 23 6 -0.0041 1.4111 6.5610 24 7 0.2357 0.1928 6.9262 25 6 0.7100 -0.6249 6.0201 26 6 1.0338 -2.0681 6.3089 27 6 0.5999 -2.6320 7.6634 28 6 2.0799 -2.3553 7.3877 29 1 -0.3634 0.5144 0.8896 30 1 -0.3632 0.5133 -0.8904 31 1 -0.3634 -1.0277 0.0005 32 1 1.6593 -0.2219 -2.1447 33 1 1.6981 -1.7560 -1.2419 34 1 3.9144 0.3410 -1.3671 35 1 3.9439 -1.2830 -2.0984 36 1 6.6845 -1.5121 2.6270 37 1 3.9415 -1.2845 2.0986 38 1 3.9142 0.3409 1.3675 39 1 1.2751 0.8870 2.4072 40 1 -0.3943 2.1830 7.2077 41 1 0.9991 -2.7386 5.4502 42 1 0.0807 -1.9590 8.3458 43 1 0.2803 -3.6737 7.6960 44 1 2.7335 -3.2148 7.2390 45 1 2.5344 -1.5002 7.8883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968399985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:34 Heat of formation + Delta-G solvation = 33.634072 kcal Electronic energy + Delta-G solvation = -27386.812881 eV Core-core repulsion = 23724.570501 eV Total energy + Delta-G solvation = -3662.242380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63422 -40.64851 -39.04091 -37.48229 -36.12549 -34.74494 -32.86987 -32.04134 -30.36757 -29.00883 -27.18966 -25.88844 -24.47528 -23.69088 -23.29433 -22.73938 -22.21529 -21.32477 -20.20777 -19.09877 -18.74690 -18.03086 -17.14722 -16.91908 -16.65611 -16.18519 -15.83912 -15.59973 -15.37937 -15.31661 -15.14071 -14.84374 -14.83434 -14.45579 -14.11130 -13.60236 -13.39506 -13.29056 -13.07873 -12.74912 -12.65177 -12.57818 -12.46136 -12.38298 -12.20493 -11.93323 -11.79634 -11.66229 -11.53876 -11.35465 -11.23105 -11.11567 -10.70114 -10.63926 -10.56064 -10.15274 -9.72693 -8.70573 -7.91285 -5.36944 -0.80640 0.15023 0.52695 1.34357 1.39055 1.43571 1.51455 1.97767 2.10616 2.47664 2.94208 3.10665 3.25665 3.56541 3.70741 3.77243 3.89104 3.95178 3.98772 4.07127 4.13892 4.20351 4.44714 4.46158 4.55878 4.64520 4.68876 4.71587 4.82220 4.90839 4.96350 5.00587 5.09334 5.14281 5.16236 5.18922 5.23864 5.28064 5.39710 5.43077 5.51680 5.60177 5.75182 6.33059 6.42177 6.56438 7.08786 7.15295 7.83187 8.32460 9.13656 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.004454 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.850517 B = 6284.425113 C = 8149.295008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.080 0.920 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.265 4.265 8 H 0.068 0.932 9 C -0.048 4.048 10 N -0.930 5.930 11 Si 0.960 3.040 12 H -0.276 1.276 13 H -0.298 1.298 14 H -0.272 1.272 15 C 0.180 3.820 16 C 0.142 3.858 17 H 0.054 0.946 18 N -0.700 5.700 19 C 0.587 3.413 20 O -0.561 6.561 21 C -0.324 4.324 22 S 0.224 5.776 23 C 0.050 3.950 24 N -0.494 5.494 25 C 0.168 3.832 26 C -0.125 4.125 27 C -0.135 4.135 28 C -0.161 4.161 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.022 0.978 35 H 0.056 0.944 36 H 0.247 0.753 37 H 0.044 0.956 38 H -0.002 1.002 39 H 0.406 0.594 40 H 0.253 0.747 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.475 10.072 6.385 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.098 0.902 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.396 4.396 8 H 0.086 0.914 9 C -0.243 4.243 10 N -0.576 5.576 11 Si 0.788 3.212 12 H -0.202 1.202 13 H -0.224 1.224 14 H -0.197 1.197 15 C 0.052 3.948 16 C 0.036 3.964 17 H 0.072 0.928 18 N -0.351 5.351 19 C 0.374 3.626 20 O -0.441 6.441 21 C -0.448 4.448 22 S 0.480 5.520 23 C -0.245 4.245 24 N -0.208 5.208 25 C 0.030 3.970 26 C -0.146 4.146 27 C -0.173 4.173 28 C -0.198 4.198 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.016 0.984 39 H 0.242 0.758 40 H 0.269 0.731 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.117 0.883 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.317 10.048 6.358 21.006 hybrid contribution 1.296 -1.401 0.488 1.970 sum -16.021 8.647 6.846 19.450 Atomic orbital electron populations 1.21778 0.92934 1.01754 1.02818 1.21346 0.96990 0.99418 0.92791 0.90195 1.22018 0.95638 1.00271 0.97447 1.21184 0.93624 0.96207 0.87957 1.44216 1.48116 1.39881 1.00973 1.19485 1.09462 1.03921 1.06694 0.91408 1.25767 0.98542 1.00180 0.99845 1.70167 1.38159 1.30803 1.18448 0.85393 0.78812 0.80554 0.76487 1.20205 1.22416 1.19691 1.20770 0.89595 0.94985 0.89421 1.21573 0.94941 0.95999 0.83920 0.92771 1.45747 1.65445 1.14355 1.09561 1.17078 0.77331 0.85850 0.82371 1.90794 1.51308 1.17482 1.84558 1.25377 1.19156 1.00828 0.99436 1.83531 1.55069 1.03210 1.10168 1.29520 0.99621 0.97038 0.98293 1.66010 1.16735 1.03320 1.34745 1.19760 0.94296 0.96059 0.86858 1.20840 1.07755 0.90593 0.95411 1.23031 0.96154 1.02438 0.95635 1.22939 0.92989 1.03380 1.00540 0.92144 0.90047 0.93758 0.88316 0.93066 0.96035 0.92571 0.94448 0.93778 0.98375 0.75785 0.73078 0.86723 0.87086 0.86975 0.88298 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.02 71.98 0.65 -2.40 16 2 C -0.09 -2.57 2.27 -10.66 -0.02 -2.59 16 3 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.11 -3.57 5.39 30.77 0.17 -3.40 16 5 C 0.14 5.49 6.50 86.36 0.56 6.05 16 6 N -0.61 -31.66 2.99 -699.11 -2.09 -33.76 16 7 C -0.27 -15.36 9.58 84.04 0.81 -14.56 16 8 H 0.07 3.80 7.88 -2.91 -0.02 3.77 16 9 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 10 N -0.93 -58.42 11.20 21.65 0.24 -58.18 16 11 Si 0.96 48.06 29.59 68.60 2.03 50.09 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 13 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 14 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 15 C 0.18 9.14 4.88 86.36 0.42 9.57 16 16 C 0.14 5.60 2.06 45.07 0.09 5.69 16 17 H 0.05 2.50 7.58 -2.39 -0.02 2.48 16 18 N -0.70 -23.68 4.37 -446.14 -1.95 -25.63 16 19 C 0.59 22.40 7.75 86.45 0.67 23.07 16 20 O -0.56 -26.65 13.98 -4.31 -0.06 -26.71 16 21 C -0.32 -9.86 6.48 23.88 0.15 -9.70 16 22 S 0.22 4.01 22.35 -56.49 -1.26 2.75 16 23 C 0.05 0.79 12.22 130.60 1.60 2.39 16 24 N -0.49 -12.03 9.81 -190.40 -1.87 -13.90 16 25 C 0.17 5.11 6.41 42.09 0.27 5.38 16 26 C -0.13 -4.02 5.44 -11.54 -0.06 -4.08 16 27 C -0.14 -3.31 10.09 30.62 0.31 -3.00 16 28 C -0.16 -4.59 10.24 30.62 0.31 -4.27 16 29 H 0.06 1.22 7.36 -2.39 -0.02 1.20 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.06 2.23 7.93 -2.39 -0.02 2.22 16 36 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.04 2.70 6.06 -2.39 -0.01 2.69 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.41 10.67 7.49 -92.71 -0.69 9.97 16 40 H 0.25 1.32 8.06 -2.91 -0.02 1.29 16 41 H 0.11 4.34 6.17 -2.39 -0.01 4.33 16 42 H 0.11 2.53 7.74 -2.39 -0.02 2.51 16 43 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 44 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 45 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 Total: -1.00 -78.82 374.86 1.69 -77.13 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.31 Total: 22.51 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 6.34 Total: 5.70 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -5.67 Total: -131.47 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.06 Total: -26.71 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.26 Total: 2.75 kcal Total: -78.82 1.69 -77.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968399985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.760 kcal (2) G-P(sol) polarization free energy of solvation -78.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds