Wall clock time and date at job start Tue Mar 31 2020 19:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46066 * 2 1 4 4 C 1.53038 * 109.46251 * 240.02772 * 2 1 3 5 5 C 1.53194 * 109.31614 * 178.61664 * 4 2 1 6 6 N 1.46919 * 108.77678 * 54.63283 * 5 4 2 7 7 C 1.36939 * 120.63217 * 126.36771 * 6 5 4 8 8 H 1.07996 * 119.99905 * 331.94182 * 7 6 5 9 9 C 1.38808 * 119.99773 * 152.21124 * 7 6 5 10 10 N 1.31616 * 120.00492 * 342.81736 * 9 7 6 11 11 Si 1.86802 * 119.99784 * 162.81823 * 9 7 6 12 12 H 1.48503 * 109.47256 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47450 * 119.99847 * 11 9 7 14 14 H 1.48501 * 109.47146 * 240.00062 * 11 9 7 15 15 C 1.46934 * 118.73899 * 306.64774 * 6 5 4 16 16 C 1.52760 * 109.00615 * 53.30702 * 15 6 5 17 17 H 1.09002 * 109.55773 * 185.55029 * 16 15 6 18 18 N 1.46497 * 109.35963 * 65.50297 * 16 15 6 19 19 C 1.34776 * 120.00611 * 85.15832 * 18 16 15 20 20 O 1.21690 * 119.99456 * 359.97438 * 19 18 16 21 21 C 1.46674 * 120.00679 * 179.97438 * 19 18 16 22 22 C 1.35668 * 126.12576 * 359.68855 * 21 19 18 23 23 N 1.30941 * 114.18693 * 179.82669 * 22 21 19 24 24 C 1.29426 * 117.36960 * 0.48096 * 23 22 21 25 25 C 1.50703 * 124.81030 * 179.69981 * 24 23 22 26 26 C 1.52997 * 117.49688 * 8.65785 * 25 24 23 27 27 C 1.53002 * 60.00249 * 252.51467 * 26 25 24 28 28 S 1.70958 * 110.38701 * 359.73122 * 24 23 22 29 29 H 1.09001 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47024 * 299.97040 * 1 2 3 31 31 H 1.08998 * 109.47051 * 59.96853 * 1 2 3 32 32 H 1.09001 * 109.49788 * 58.66152 * 4 2 1 33 33 H 1.09003 * 109.49746 * 298.56852 * 4 2 1 34 34 H 1.09007 * 109.58508 * 294.84892 * 5 4 2 35 35 H 1.08996 * 109.58682 * 174.42748 * 5 4 2 36 36 H 0.97003 * 120.00467 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.58525 * 173.14197 * 15 6 5 38 38 H 1.09002 * 109.58280 * 293.56809 * 15 6 5 39 39 H 0.97002 * 119.99956 * 265.15494 * 18 16 15 40 40 H 1.07995 * 122.90544 * 359.97438 * 22 21 19 41 41 H 1.09000 * 115.55142 * 154.37248 * 25 24 23 42 42 H 1.08999 * 117.50042 * 0.02562 * 26 25 24 43 43 H 1.09000 * 117.49812 * 145.02427 * 26 25 24 44 44 H 1.08993 * 117.49778 * 252.51526 * 27 26 25 45 45 H 1.09000 * 117.51717 * 107.48070 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5714 -0.6887 -1.2641 6 7 4.0679 -1.2488 0.0001 7 6 4.9757 -2.2740 0.0003 8 1 5.0042 -2.9702 -0.8249 9 6 5.8555 -2.4217 1.0637 10 7 6.0606 -1.4199 1.8923 11 14 6.7486 -4.0425 1.3188 12 1 6.3465 -5.0015 0.2586 13 1 8.2147 -3.8158 1.2517 14 1 6.3941 -4.5990 2.6492 15 6 3.5671 -0.6922 1.2644 16 6 2.0398 -0.7206 1.2501 17 1 1.6573 -0.2205 2.1399 18 7 1.5802 -2.1115 1.2345 19 6 1.4515 -2.7919 2.3908 20 8 1.7177 -2.2509 3.4478 21 6 0.9907 -4.1843 2.3752 22 6 0.6558 -4.9037 1.2748 23 7 0.2775 -6.1308 1.5308 24 6 0.2583 -6.5012 2.7708 25 6 -0.1537 -7.8678 3.2542 26 6 -0.3843 -8.9507 2.1984 27 6 -1.5757 -8.3319 2.9323 28 16 0.7657 -5.2201 3.7828 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5143 -0.8897 32 1 1.6572 -0.2209 -2.1398 33 1 1.6978 -1.7558 -1.2381 34 1 3.9144 0.3408 -1.3673 35 1 3.9417 -1.2847 -2.0983 36 1 6.6752 -1.5232 2.6356 37 1 3.9346 -1.2905 2.0981 38 1 3.9097 0.3371 1.3715 39 1 1.3683 -2.5429 0.3919 40 1 0.6998 -4.4999 0.2741 41 1 0.2729 -8.1773 4.2084 42 1 -0.2376 -8.6749 1.1541 43 1 -0.1092 -9.9731 2.4576 44 1 -2.0843 -8.9471 3.6744 45 1 -2.2132 -7.6487 2.3712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968565651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:44 Heat of formation + Delta-G solvation = 33.574414 kcal Electronic energy + Delta-G solvation = -27383.077214 eV Core-core repulsion = 23720.832247 eV Total energy + Delta-G solvation = -3662.244967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.47931 -40.67177 -39.08286 -37.78619 -35.96280 -34.44790 -32.89315 -31.99697 -30.33737 -28.92698 -27.59858 -25.85073 -24.26371 -23.76693 -23.24585 -22.79370 -22.54178 -20.48318 -20.38846 -19.27621 -18.58502 -18.24953 -17.03732 -16.78247 -16.56367 -16.19716 -15.79089 -15.59027 -15.45550 -15.30359 -15.07431 -14.85062 -14.73168 -14.51306 -14.12540 -13.61220 -13.21645 -13.17657 -13.01668 -12.78771 -12.68243 -12.63942 -12.50644 -12.36230 -12.23227 -11.97269 -11.86205 -11.69018 -11.57649 -11.36892 -11.20380 -11.08466 -10.66293 -10.57408 -10.55127 -10.09679 -9.79733 -8.66219 -7.89030 -5.33153 -0.83988 0.04662 0.61069 1.33439 1.35380 1.38886 1.46599 2.09690 2.33936 2.45291 2.81582 3.02934 3.27188 3.65509 3.70313 3.75841 3.86895 3.88512 3.98145 4.06253 4.11232 4.14255 4.29114 4.50770 4.66241 4.70377 4.78195 4.80523 4.87893 4.88972 4.95436 4.95785 5.07814 5.15039 5.16819 5.23455 5.25419 5.30348 5.45559 5.49660 5.57899 5.66475 5.69453 6.37220 6.46869 6.52751 7.12526 7.18671 7.86092 8.36322 9.16094 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010700 B = 0.004435 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.114971 B = 6311.984020 C = 7701.873230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.080 0.920 4 C -0.117 4.117 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.247 4.247 8 H 0.070 0.930 9 C -0.048 4.048 10 N -0.932 5.932 11 Si 0.946 3.054 12 H -0.262 1.262 13 H -0.289 1.289 14 H -0.303 1.303 15 C 0.171 3.829 16 C 0.138 3.862 17 H 0.067 0.933 18 N -0.673 5.673 19 C 0.588 3.412 20 O -0.588 6.588 21 C -0.320 4.320 22 C 0.108 3.892 23 N -0.494 5.494 24 C 0.083 3.917 25 C -0.122 4.122 26 C -0.144 4.144 27 C -0.137 4.137 28 S 0.218 5.782 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.015 0.985 35 H 0.057 0.943 36 H 0.245 0.755 37 H 0.047 0.953 38 H 0.000 1.000 39 H 0.406 0.594 40 H 0.199 0.801 41 H 0.149 0.851 42 H 0.092 0.908 43 H 0.125 0.875 44 H 0.132 0.868 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.792 -10.141 -2.131 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.323 5.323 7 C -0.377 4.377 8 H 0.087 0.913 9 C -0.243 4.243 10 N -0.578 5.578 11 Si 0.776 3.224 12 H -0.186 1.186 13 H -0.216 1.216 14 H -0.231 1.231 15 C 0.043 3.957 16 C 0.032 3.968 17 H 0.085 0.915 18 N -0.323 5.323 19 C 0.374 3.626 20 O -0.470 6.470 21 C -0.445 4.445 22 C -0.051 4.051 23 N -0.208 5.208 24 C -0.191 4.191 25 C -0.144 4.144 26 C -0.183 4.183 27 C -0.176 4.176 28 S 0.479 5.521 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.018 0.982 39 H 0.244 0.756 40 H 0.215 0.785 41 H 0.166 0.834 42 H 0.111 0.889 43 H 0.144 0.856 44 H 0.150 0.850 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.492 -9.972 -0.577 21.017 hybrid contribution 1.435 -0.021 -0.597 1.555 sum -17.056 -9.993 -1.174 19.803 Atomic orbital electron populations 1.21769 0.93013 1.02131 1.02387 1.21283 0.96892 0.99259 0.93128 0.90177 1.21976 0.95587 1.00436 0.97564 1.21162 0.93705 0.96012 0.88071 1.44162 1.47936 1.39579 1.00667 1.19437 1.09162 1.03363 1.05776 0.91282 1.25642 0.98782 0.99547 1.00355 1.70163 1.38641 1.30671 1.18357 0.85510 0.78291 0.81386 0.77261 1.18566 1.21598 1.23077 1.20787 0.89940 0.95237 0.89687 1.21507 0.95362 0.80898 0.99078 0.91489 1.45460 1.65451 1.13663 1.07748 1.16975 0.77050 0.84174 0.84416 1.90788 1.53506 1.70648 1.32084 1.25677 1.18763 1.01110 0.98912 1.22390 0.94943 0.87879 0.99872 1.66107 1.19475 1.15850 1.19368 1.27119 0.99340 1.01084 0.91534 1.20876 1.03793 0.87181 1.02514 1.23098 1.01161 0.97048 0.97038 1.23157 0.88731 1.02440 1.03244 1.83952 1.57311 1.02022 1.08826 0.92616 0.93144 0.90348 0.88829 0.92000 0.96711 0.92402 0.94625 0.93470 0.98210 0.75597 0.78482 0.83355 0.88918 0.85644 0.84967 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.05 71.98 0.65 -2.31 16 2 C -0.09 -2.47 2.48 -10.77 -0.03 -2.50 16 3 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.12 -3.22 5.20 30.67 0.16 -3.06 16 5 C 0.14 5.12 6.52 86.36 0.56 5.68 16 6 N -0.60 -29.10 2.92 -699.92 -2.04 -31.15 16 7 C -0.25 -13.47 9.58 84.03 0.81 -12.66 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 9 C -0.05 -2.76 4.91 84.86 0.42 -2.35 16 10 N -0.93 -57.97 11.20 21.65 0.24 -57.73 16 11 Si 0.95 47.12 29.59 68.60 2.03 49.15 16 12 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 14 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 15 C 0.17 8.47 4.87 86.22 0.42 8.89 16 16 C 0.14 5.25 2.23 44.93 0.10 5.35 16 17 H 0.07 2.71 7.58 -2.39 -0.02 2.69 16 18 N -0.67 -24.08 4.23 -446.83 -1.89 -25.97 16 19 C 0.59 23.66 7.75 86.45 0.67 24.33 16 20 O -0.59 -28.50 16.63 -4.32 -0.07 -28.58 16 21 C -0.32 -10.84 6.48 23.88 0.15 -10.69 16 22 C 0.11 3.10 10.93 84.23 0.92 4.02 16 23 N -0.49 -13.57 9.98 -190.30 -1.90 -15.47 16 24 C 0.08 2.05 6.96 88.46 0.62 2.67 16 25 C -0.12 -2.05 6.28 -11.54 -0.07 -2.13 16 26 C -0.14 -2.04 10.12 30.59 0.31 -1.73 16 27 C -0.14 -1.70 10.23 30.60 0.31 -1.39 16 28 S 0.22 6.33 23.01 -56.49 -1.30 5.03 16 29 H 0.05 1.17 7.55 -2.39 -0.02 1.16 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 1.63 6.40 -2.39 -0.02 1.62 16 34 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 36 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.05 2.83 6.06 -2.38 -0.01 2.82 16 38 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.41 12.35 5.35 -92.71 -0.50 11.86 16 40 H 0.20 4.63 7.15 -2.91 -0.02 4.61 16 41 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.09 1.67 7.84 -2.39 -0.02 1.65 16 43 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -75.26 375.94 1.58 -73.67 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.51 Total: 18.90 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 6.00 Total: 12.13 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -5.59 Total: -130.31 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.07 Total: -28.58 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -1.30 Total: 5.03 kcal Total: -75.26 1.58 -73.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968565651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.247 kcal (2) G-P(sol) polarization free energy of solvation -75.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds