Wall clock time and date at job start Tue Mar 31 2020 19:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46249 * 2 1 4 4 C 1.53035 * 109.45867 * 240.03474 * 2 1 3 5 5 C 1.53194 * 109.31183 * 178.61616 * 4 2 1 6 6 N 1.46921 * 108.77647 * 54.63439 * 5 4 2 7 7 C 1.36945 * 120.62806 * 126.38723 * 6 5 4 8 8 H 1.07997 * 119.99860 * 207.68158 * 7 6 5 9 9 C 1.38813 * 119.99701 * 27.68808 * 7 6 5 10 10 N 1.31614 * 120.00122 * 17.36042 * 9 7 6 11 11 Si 1.86798 * 119.99584 * 197.35167 * 9 7 6 12 12 H 1.48504 * 109.46772 * 60.00524 * 11 9 7 13 13 H 1.48503 * 109.46980 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47668 * 300.00307 * 11 9 7 15 15 C 1.46933 * 118.76717 * 306.41384 * 6 5 4 16 16 C 1.53040 * 109.45868 * 119.96906 * 2 1 3 17 17 H 1.08998 * 109.49812 * 61.40376 * 16 2 1 18 18 N 1.46502 * 109.49955 * 301.33697 * 16 2 1 19 19 C 1.34775 * 119.99902 * 155.06491 * 18 16 2 20 20 O 1.21686 * 120.00322 * 0.02562 * 19 18 16 21 21 C 1.46685 * 119.99674 * 180.02562 * 19 18 16 22 22 C 1.35663 * 126.13322 * 359.97073 * 21 19 18 23 23 N 1.30935 * 114.19562 * 180.02562 * 22 21 19 24 24 C 1.29436 * 117.36431 * 0.02562 * 23 22 21 25 25 C 1.50696 * 124.80687 * 179.97438 * 24 23 22 26 26 C 1.53001 * 117.49594 * 8.64892 * 25 24 23 27 27 C 1.53004 * 117.49819 * 300.02558 * 25 24 23 28 28 S 1.70960 * 110.38834 * 0.02562 * 24 23 22 29 29 H 1.09007 * 109.47229 * 300.03238 * 1 2 3 30 30 H 1.09006 * 109.47297 * 60.02743 * 1 2 3 31 31 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.50082 * 298.56535 * 4 2 1 33 33 H 1.09007 * 109.49502 * 58.66748 * 4 2 1 34 34 H 1.09005 * 109.58975 * 174.42671 * 5 4 2 35 35 H 1.08999 * 109.58596 * 294.70363 * 5 4 2 36 36 H 0.97007 * 120.00030 * 180.02562 * 10 9 7 37 37 H 1.08996 * 109.55865 * 293.78340 * 15 6 5 38 38 H 1.08998 * 109.61421 * 173.35429 * 15 6 5 39 39 H 0.96998 * 119.99656 * 335.06321 * 18 16 2 40 40 H 1.08003 * 122.90063 * 0.04440 * 22 21 19 41 41 H 1.09002 * 115.55215 * 154.35407 * 25 24 23 42 42 H 1.08995 * 117.50527 * 359.97438 * 26 25 24 43 43 H 1.09000 * 117.49463 * 145.02253 * 26 25 24 44 44 H 1.09000 * 117.49337 * 214.97529 * 27 25 24 45 45 H 1.08997 * 117.49972 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0000 7 6 4.9760 -2.2738 -0.0001 8 1 5.0089 -2.9661 0.8281 9 6 5.8542 -2.4228 -1.0647 10 7 6.0603 -1.4209 -1.8930 11 14 6.7438 -4.0452 -1.3215 12 1 5.7485 -5.1288 -1.5232 13 1 7.6179 -3.9464 -2.5179 14 1 7.5723 -4.3500 -0.1275 15 6 3.5713 -0.6894 1.2647 16 6 2.0398 -0.7208 1.2500 17 1 1.6973 -1.7555 1.2385 18 7 1.5255 -0.0488 2.4460 19 6 1.3983 -0.7321 3.6007 20 8 1.7110 -1.9071 3.6501 21 6 0.8828 -0.0594 4.7979 22 6 0.4994 1.2391 4.8833 23 7 0.0750 1.5965 6.0693 24 6 0.0714 0.6937 6.9969 25 6 -0.3802 0.9208 8.4165 26 6 -1.0571 2.2548 8.7376 27 6 0.3637 1.9789 9.2338 28 16 0.6530 -0.7925 6.3838 29 1 -0.3634 0.5144 0.8897 30 1 -0.3634 0.5134 -0.8903 31 1 -0.3634 -1.0276 0.0005 32 1 1.6978 -1.7556 -1.2383 33 1 1.6571 -0.2205 -2.1398 34 1 3.9417 -1.2845 -2.0985 35 1 3.9142 0.3407 -1.3699 36 1 6.6738 -1.5252 -2.6371 37 1 3.9147 0.3399 1.3681 38 1 3.9411 -1.2857 2.0987 39 1 1.2766 0.8879 2.4067 40 1 0.5404 1.9192 4.0453 41 1 -0.7360 0.0357 8.9440 42 1 -1.1754 2.9684 7.9222 43 1 -1.8585 2.2475 9.4764 44 1 0.4969 1.7901 10.2990 45 1 1.1800 2.5104 8.7448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968565652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:49 Heat of formation + Delta-G solvation = 51.627108 kcal Electronic energy + Delta-G solvation = -26327.230350 eV Core-core repulsion = 22665.768206 eV Total energy + Delta-G solvation = -3661.462144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.42146 -39.49990 -37.69192 -37.13580 -34.52336 -33.10824 -31.18746 -30.81700 -28.75657 -27.36612 -26.61805 -24.10499 -23.30222 -22.76976 -22.51524 -21.22808 -20.93241 -19.79601 -18.97244 -18.45079 -17.12897 -16.81016 -16.17666 -15.47923 -15.28785 -14.88356 -14.68377 -14.49007 -14.24719 -13.90746 -13.73139 -13.45156 -13.35926 -13.17570 -12.62399 -12.47767 -12.04867 -11.92581 -11.75428 -11.63396 -11.52258 -11.25421 -11.06336 -11.03513 -10.78320 -10.69616 -10.33142 -10.27677 -10.18847 -9.89084 -9.78887 -9.67540 -9.62509 -9.52839 -9.06108 -8.83258 -8.39711 -6.67636 -5.77818 -3.19794 0.04605 0.92106 1.48394 2.23565 3.21076 3.33135 3.41987 3.42731 3.46406 3.49835 3.70563 4.33341 4.40664 4.52350 4.55042 4.74356 4.91115 5.00838 5.10784 5.24404 5.26558 5.36769 5.37506 5.46140 5.58167 5.59263 5.74810 5.80488 5.87859 5.93856 6.03450 6.14753 6.20113 6.27644 6.52208 6.60571 6.63711 6.71112 6.81467 6.96698 7.34934 7.36090 7.60610 7.64798 7.83709 8.28035 8.46583 9.22723 9.84854 10.40237 11.30915 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.002587 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.595591 B =10821.913253 C =11662.466819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.586 5.586 7 C -0.251 4.251 8 H 0.066 0.934 9 C 0.003 3.997 10 N -0.904 5.904 11 Si 0.903 3.097 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.142 3.858 16 C 0.134 3.866 17 H 0.089 0.911 18 N -0.706 5.706 19 C 0.589 3.411 20 O -0.530 6.530 21 C -0.289 4.289 22 C 0.090 3.910 23 N -0.479 5.479 24 C 0.064 3.936 25 C -0.102 4.102 26 C -0.148 4.148 27 C -0.154 4.154 28 S 0.237 5.763 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.019 0.981 36 H 0.254 0.746 37 H 0.018 0.982 38 H 0.058 0.942 39 H 0.395 0.605 40 H 0.180 0.820 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.004 8.376 17.159 24.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.309 5.309 7 C -0.381 4.381 8 H 0.084 0.916 9 C -0.196 4.196 10 N -0.548 5.548 11 Si 0.733 3.267 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.014 3.986 16 C 0.029 3.971 17 H 0.107 0.893 18 N -0.356 5.356 19 C 0.373 3.627 20 O -0.407 6.407 21 C -0.414 4.414 22 C -0.068 4.068 23 N -0.193 5.193 24 C -0.210 4.210 25 C -0.123 4.123 26 C -0.187 4.187 27 C -0.193 4.193 28 S 0.497 5.503 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.037 0.963 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.229 0.771 40 H 0.197 0.803 41 H 0.147 0.853 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.644 6.973 17.602 24.560 hybrid contribution 0.421 0.344 -1.049 1.182 sum -15.223 7.317 16.553 23.649 Atomic orbital electron populations 1.21863 0.95951 1.01635 1.00761 1.21312 0.94591 0.99719 0.95381 0.91376 1.22251 1.00678 0.99582 0.94788 1.20853 0.87301 0.97371 0.90378 1.43985 1.48086 1.39787 0.99056 1.19181 1.09785 1.02856 1.06245 0.91596 1.25014 0.97201 0.97517 0.99846 1.70029 1.37802 1.29036 1.17969 0.86351 0.79229 0.83818 0.77300 1.20961 1.21643 1.20857 1.21192 0.89898 0.96749 0.90790 1.21861 0.96859 0.97004 0.81400 0.89304 1.45888 1.65565 1.14129 1.10040 1.16675 0.78221 0.86071 0.81730 1.90883 1.50062 1.15331 1.84438 1.25929 1.15771 0.99322 1.00374 1.22096 0.96634 0.92954 0.95162 1.66000 1.18514 1.34740 1.00087 1.26483 1.01635 0.93831 0.99006 1.20549 1.07372 0.95977 0.88433 1.23021 0.95637 0.96636 1.03411 1.23071 0.96342 1.00323 0.99578 1.84090 1.54565 1.11693 0.99905 0.93452 0.92860 0.92875 0.92365 0.92625 0.89191 0.96285 0.93603 0.96418 0.92309 0.77138 0.80274 0.85307 0.87276 0.87987 0.87706 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.02 37.16 0.34 -1.52 16 2 C -0.09 -1.43 2.27 -90.58 -0.21 -1.63 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.13 -2.44 5.36 -26.61 -0.14 -2.59 16 5 C 0.17 3.90 5.31 -3.71 -0.02 3.88 16 6 N -0.59 -14.86 3.00 -172.31 -0.52 -15.38 16 7 C -0.25 -7.07 9.58 -15.05 -0.14 -7.22 16 8 H 0.07 1.87 7.89 -52.49 -0.41 1.46 16 9 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 10 N -0.90 -26.27 11.19 55.49 0.62 -25.65 16 11 Si 0.90 22.15 29.59 -169.99 -5.03 17.12 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 C 0.14 3.08 6.09 -3.71 -0.02 3.06 16 16 C 0.13 2.37 2.06 -67.81 -0.14 2.23 16 17 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 18 N -0.71 -10.17 4.35 -55.00 -0.24 -10.40 16 19 C 0.59 9.39 7.75 -12.85 -0.10 9.29 16 20 O -0.53 -10.65 16.63 5.20 0.09 -10.56 16 21 C -0.29 -3.76 6.48 -37.09 -0.24 -4.00 16 22 C 0.09 0.99 10.93 -18.85 -0.21 0.79 16 23 N -0.48 -5.39 9.98 -11.50 -0.11 -5.51 16 24 C 0.06 0.65 6.96 -13.29 -0.09 0.56 16 25 C -0.10 -0.74 6.28 -91.77 -0.58 -1.32 16 26 C -0.15 -0.93 10.12 -26.73 -0.27 -1.20 16 27 C -0.15 -0.96 10.23 -26.73 -0.27 -1.23 16 28 S 0.24 2.67 23.01 -107.50 -2.47 0.20 16 29 H 0.05 0.53 7.36 -51.92 -0.38 0.15 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 39 H 0.39 4.39 7.02 -40.82 -0.29 4.10 16 40 H 0.18 1.49 7.15 -52.48 -0.38 1.12 16 41 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.11 0.83 7.84 -51.93 -0.41 0.43 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -32.74 379.10 -10.91 -43.65 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.77 Total: 1.73 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.18 Total: -0.91 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.25 Total: -56.94 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -2.47 Total: 0.20 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.74 -10.91 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968565652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.278 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds