Wall clock time and date at job start Tue Mar 31 2020 19:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46249 * 2 1 4 4 C 1.53035 * 109.45867 * 240.03474 * 2 1 3 5 5 C 1.53194 * 109.31183 * 178.61616 * 4 2 1 6 6 N 1.46921 * 108.77647 * 54.63439 * 5 4 2 7 7 C 1.36945 * 120.62806 * 126.38723 * 6 5 4 8 8 H 1.07997 * 119.99860 * 207.68158 * 7 6 5 9 9 C 1.38813 * 119.99701 * 27.68808 * 7 6 5 10 10 N 1.31614 * 120.00122 * 17.36042 * 9 7 6 11 11 Si 1.86798 * 119.99584 * 197.35167 * 9 7 6 12 12 H 1.48504 * 109.46772 * 60.00524 * 11 9 7 13 13 H 1.48503 * 109.46980 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47668 * 300.00307 * 11 9 7 15 15 C 1.46933 * 118.76717 * 306.41384 * 6 5 4 16 16 C 1.53040 * 109.45868 * 119.96906 * 2 1 3 17 17 H 1.08998 * 109.49812 * 61.40376 * 16 2 1 18 18 N 1.46502 * 109.49955 * 301.33697 * 16 2 1 19 19 C 1.34775 * 119.99902 * 155.06491 * 18 16 2 20 20 O 1.21686 * 120.00322 * 0.02562 * 19 18 16 21 21 C 1.46685 * 119.99674 * 180.02562 * 19 18 16 22 22 C 1.35663 * 126.13322 * 359.97073 * 21 19 18 23 23 N 1.30935 * 114.19562 * 180.02562 * 22 21 19 24 24 C 1.29436 * 117.36431 * 0.02562 * 23 22 21 25 25 C 1.50696 * 124.80687 * 179.97438 * 24 23 22 26 26 C 1.53001 * 117.49594 * 8.64892 * 25 24 23 27 27 C 1.53004 * 117.49819 * 300.02558 * 25 24 23 28 28 S 1.70960 * 110.38834 * 0.02562 * 24 23 22 29 29 H 1.09007 * 109.47229 * 300.03238 * 1 2 3 30 30 H 1.09006 * 109.47297 * 60.02743 * 1 2 3 31 31 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.50082 * 298.56535 * 4 2 1 33 33 H 1.09007 * 109.49502 * 58.66748 * 4 2 1 34 34 H 1.09005 * 109.58975 * 174.42671 * 5 4 2 35 35 H 1.08999 * 109.58596 * 294.70363 * 5 4 2 36 36 H 0.97007 * 120.00030 * 180.02562 * 10 9 7 37 37 H 1.08996 * 109.55865 * 293.78340 * 15 6 5 38 38 H 1.08998 * 109.61421 * 173.35429 * 15 6 5 39 39 H 0.96998 * 119.99656 * 335.06321 * 18 16 2 40 40 H 1.08003 * 122.90063 * 0.04440 * 22 21 19 41 41 H 1.09002 * 115.55215 * 154.35407 * 25 24 23 42 42 H 1.08995 * 117.50527 * 359.97438 * 26 25 24 43 43 H 1.09000 * 117.49463 * 145.02253 * 26 25 24 44 44 H 1.09000 * 117.49337 * 214.97529 * 27 25 24 45 45 H 1.08997 * 117.49972 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0000 7 6 4.9760 -2.2738 -0.0001 8 1 5.0089 -2.9661 0.8281 9 6 5.8542 -2.4228 -1.0647 10 7 6.0603 -1.4209 -1.8930 11 14 6.7438 -4.0452 -1.3215 12 1 5.7485 -5.1288 -1.5232 13 1 7.6179 -3.9464 -2.5179 14 1 7.5723 -4.3500 -0.1275 15 6 3.5713 -0.6894 1.2647 16 6 2.0398 -0.7208 1.2500 17 1 1.6973 -1.7555 1.2385 18 7 1.5255 -0.0488 2.4460 19 6 1.3983 -0.7321 3.6007 20 8 1.7110 -1.9071 3.6501 21 6 0.8828 -0.0594 4.7979 22 6 0.4994 1.2391 4.8833 23 7 0.0750 1.5965 6.0693 24 6 0.0714 0.6937 6.9969 25 6 -0.3802 0.9208 8.4165 26 6 -1.0571 2.2548 8.7376 27 6 0.3637 1.9789 9.2338 28 16 0.6530 -0.7925 6.3838 29 1 -0.3634 0.5144 0.8897 30 1 -0.3634 0.5134 -0.8903 31 1 -0.3634 -1.0276 0.0005 32 1 1.6978 -1.7556 -1.2383 33 1 1.6571 -0.2205 -2.1398 34 1 3.9417 -1.2845 -2.0985 35 1 3.9142 0.3407 -1.3699 36 1 6.6738 -1.5252 -2.6371 37 1 3.9147 0.3399 1.3681 38 1 3.9411 -1.2857 2.0987 39 1 1.2766 0.8879 2.4067 40 1 0.5404 1.9192 4.0453 41 1 -0.7360 0.0357 8.9440 42 1 -1.1754 2.9684 7.9222 43 1 -1.8585 2.2475 9.4764 44 1 0.4969 1.7901 10.2990 45 1 1.1800 2.5104 8.7448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968565652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:48 Heat of formation + Delta-G solvation = 31.155022 kcal Electronic energy + Delta-G solvation = -26328.118086 eV Core-core repulsion = 22665.768206 eV Total energy + Delta-G solvation = -3662.349880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47947 -40.64456 -39.17266 -37.78770 -36.23738 -34.59573 -33.05950 -32.01081 -30.18259 -28.92631 -27.58528 -25.90506 -24.40570 -23.70056 -23.24377 -22.75181 -22.20975 -21.28514 -20.13820 -19.30781 -18.73083 -18.15854 -17.26623 -16.77662 -16.52357 -16.39788 -15.77546 -15.60993 -15.41220 -15.35179 -15.12360 -14.99306 -14.73459 -14.51436 -14.16402 -13.60603 -13.23245 -13.19847 -13.14267 -12.75876 -12.68378 -12.62836 -12.36014 -12.34413 -12.06032 -11.98252 -11.88576 -11.78023 -11.63957 -11.46287 -11.29612 -11.18744 -10.65043 -10.62770 -10.55655 -10.22203 -9.83069 -8.71998 -7.92505 -5.37756 -0.85943 0.03902 0.61897 1.30928 1.43050 1.45093 1.52677 2.04849 2.11382 2.49128 2.83584 3.02353 3.21529 3.59887 3.69394 3.73274 3.80329 3.88636 3.98430 4.06049 4.08267 4.12896 4.30171 4.41846 4.49249 4.64052 4.74709 4.81543 4.86746 4.91187 4.93330 4.96561 5.01885 5.06581 5.14777 5.15713 5.20106 5.30822 5.39850 5.44199 5.52247 5.61051 5.75865 6.34296 6.40342 6.50516 7.08204 7.11817 7.80081 8.29882 9.13065 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.002587 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.595591 B =10821.913253 C =11662.466819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 H 0.083 0.917 4 C -0.123 4.123 5 C 0.171 3.829 6 N -0.606 5.606 7 C -0.269 4.269 8 H 0.052 0.948 9 C -0.043 4.043 10 N -0.928 5.928 11 Si 0.965 3.035 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.279 1.279 15 C 0.144 3.856 16 C 0.152 3.848 17 H 0.059 0.941 18 N -0.691 5.691 19 C 0.592 3.408 20 O -0.581 6.581 21 C -0.324 4.324 22 C 0.113 3.887 23 N -0.496 5.496 24 C 0.084 3.916 25 C -0.119 4.119 26 C -0.140 4.140 27 C -0.147 4.147 28 S 0.225 5.775 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.006 0.994 36 H 0.253 0.747 37 H 0.022 0.978 38 H 0.029 0.971 39 H 0.415 0.585 40 H 0.208 0.792 41 H 0.151 0.849 42 H 0.095 0.905 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.173 10.072 18.523 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 H 0.102 0.898 4 C -0.162 4.162 5 C 0.046 3.954 6 N -0.329 5.329 7 C -0.400 4.400 8 H 0.070 0.930 9 C -0.239 4.239 10 N -0.573 5.573 11 Si 0.792 3.208 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.205 1.205 15 C 0.017 3.983 16 C 0.046 3.954 17 H 0.077 0.923 18 N -0.342 5.342 19 C 0.378 3.622 20 O -0.463 6.463 21 C -0.449 4.449 22 C -0.046 4.046 23 N -0.210 5.210 24 C -0.189 4.189 25 C -0.141 4.141 26 C -0.180 4.180 27 C -0.186 4.186 28 S 0.486 5.514 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.024 0.976 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.048 0.952 39 H 0.252 0.748 40 H 0.224 0.776 41 H 0.168 0.832 42 H 0.113 0.887 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.847 8.708 18.981 27.470 hybrid contribution 1.096 -0.095 -1.326 1.723 sum -16.751 8.614 17.654 25.816 Atomic orbital electron populations 1.21785 0.92855 1.01746 1.02932 1.21242 0.96978 0.99480 0.92434 0.89822 1.22083 0.96638 0.99850 0.97633 1.20731 0.90699 0.95506 0.88464 1.44203 1.48236 1.39732 1.00779 1.19348 1.10668 1.03725 1.06221 0.93012 1.25708 0.98089 1.00478 0.99612 1.70156 1.38380 1.30531 1.18242 0.85390 0.78109 0.80070 0.77182 1.20554 1.21138 1.20511 1.21217 0.92789 0.95851 0.88464 1.21333 0.93767 0.96439 0.83886 0.92268 1.45593 1.64913 1.14922 1.08800 1.17025 0.77124 0.85478 0.82554 1.90856 1.52427 1.17690 1.85289 1.25565 1.19089 1.00301 0.99915 1.22532 0.93956 0.92321 0.95827 1.66142 1.19690 1.34867 1.00343 1.27088 0.99018 0.92779 0.99999 1.20883 1.08635 0.97559 0.87036 1.23097 0.96431 0.95061 1.03371 1.23156 0.95920 0.98973 1.00534 1.84130 1.55039 1.12690 0.99554 0.91308 0.90687 0.93837 0.93554 0.89685 0.92614 0.97575 0.93798 0.95993 0.95250 0.74756 0.77576 0.83152 0.88664 0.85604 0.85321 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.02 71.98 0.65 -2.39 16 2 C -0.08 -2.44 2.27 -10.77 -0.02 -2.46 16 3 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 4 C -0.12 -4.41 5.36 30.67 0.16 -4.24 16 5 C 0.17 8.21 5.31 86.36 0.46 8.67 16 6 N -0.61 -31.91 3.00 -699.08 -2.09 -34.01 16 7 C -0.27 -15.83 9.58 84.03 0.81 -15.03 16 8 H 0.05 3.11 7.89 -2.91 -0.02 3.09 16 9 C -0.04 -2.48 4.91 84.86 0.42 -2.06 16 10 N -0.93 -55.41 11.19 21.65 0.24 -55.17 16 11 Si 0.96 46.68 29.59 68.60 2.03 48.71 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 14 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 15 C 0.14 6.49 6.09 86.36 0.53 7.01 16 16 C 0.15 5.42 2.06 45.07 0.09 5.51 16 17 H 0.06 2.51 7.58 -2.39 -0.02 2.49 16 18 N -0.69 -19.36 4.35 -446.13 -1.94 -21.30 16 19 C 0.59 19.04 7.75 86.45 0.67 19.71 16 20 O -0.58 -24.46 16.63 -4.30 -0.07 -24.54 16 21 C -0.32 -8.22 6.48 23.88 0.15 -8.06 16 22 C 0.11 2.27 10.93 84.23 0.92 3.19 16 23 N -0.50 -10.15 9.98 -190.30 -1.90 -12.05 16 24 C 0.08 1.56 6.96 88.46 0.62 2.18 16 25 C -0.12 -1.43 6.28 -11.54 -0.07 -1.50 16 26 C -0.14 -1.36 10.12 30.60 0.31 -1.05 16 27 C -0.15 -1.42 10.23 30.60 0.31 -1.10 16 28 S 0.22 4.97 23.01 -56.49 -1.30 3.67 16 29 H 0.07 1.27 7.36 -2.38 -0.02 1.25 16 30 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 34 H 0.06 3.04 6.04 -2.38 -0.01 3.03 16 35 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 37 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.03 1.46 7.93 -2.39 -0.02 1.44 16 39 H 0.41 8.20 7.02 -92.71 -0.65 7.55 16 40 H 0.21 2.75 7.15 -2.91 -0.02 2.73 16 41 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 1.23 7.84 -2.39 -0.02 1.22 16 43 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -75.29 379.10 1.32 -73.97 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.35 Total: 12.36 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 6.00 Total: 8.36 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -5.69 Total: -122.53 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.07 Total: -24.54 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -1.30 Total: 3.67 kcal Total: -75.29 1.32 -73.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968565652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.123 kcal (2) G-P(sol) polarization free energy of solvation -75.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds