Wall clock time and date at job start Tue Mar 31 2020 19:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46141 * 2 1 4 4 C 1.53039 * 109.46015 * 119.96055 * 2 1 3 5 5 C 1.53198 * 109.31029 * 181.38202 * 4 2 1 6 6 N 1.46928 * 108.77296 * 305.36530 * 5 4 2 7 7 C 1.36939 * 120.62789 * 233.62527 * 6 5 4 8 8 H 1.08003 * 119.99832 * 27.66737 * 7 6 5 9 9 C 1.38815 * 120.00268 * 207.66074 * 7 6 5 10 10 N 1.31621 * 119.99487 * 17.38120 * 9 7 6 11 11 Si 1.86799 * 119.99959 * 197.37556 * 9 7 6 12 12 H 1.48490 * 109.47306 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46904 * 120.00434 * 11 9 7 14 14 H 1.48505 * 109.47019 * 239.99816 * 11 9 7 15 15 C 1.46924 * 118.74260 * 53.61405 * 6 5 4 16 16 C 1.53041 * 109.45421 * 240.02709 * 2 1 3 17 17 H 1.08998 * 109.49818 * 58.63530 * 16 2 1 18 18 N 1.46495 * 109.50101 * 298.56495 * 16 2 1 19 19 C 1.34776 * 120.00095 * 155.00055 * 18 16 2 20 20 O 1.21632 * 120.00093 * 0.02562 * 19 18 16 21 21 C 1.47269 * 120.00075 * 179.97438 * 19 18 16 22 22 C 1.35204 * 123.14203 * 179.70681 * 21 19 18 23 23 S 1.70937 * 108.82801 * 179.91102 * 22 21 19 24 24 C 1.70776 * 91.12857 * 0.29903 * 23 22 21 25 25 C 1.50700 * 124.71846 * 179.82170 * 24 23 22 26 26 C 1.52994 * 117.50114 * 8.62889 * 25 24 23 27 27 C 1.52998 * 117.50107 * 300.00168 * 25 24 23 28 28 N 1.28645 * 110.55626 * 359.82869 * 24 23 22 29 29 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46896 * 299.97247 * 1 2 3 31 31 H 1.08999 * 109.47051 * 59.96879 * 1 2 3 32 32 H 1.08992 * 109.49997 * 301.33245 * 4 2 1 33 33 H 1.09001 * 109.49845 * 61.43158 * 4 2 1 34 34 H 1.09001 * 109.58494 * 185.57998 * 5 4 2 35 35 H 1.08998 * 109.70284 * 65.22259 * 5 4 2 36 36 H 0.96997 * 119.99492 * 179.97438 * 10 9 7 37 37 H 1.08994 * 109.58786 * 186.60273 * 15 6 5 38 38 H 1.08997 * 109.58528 * 66.17053 * 15 6 5 39 39 H 0.97002 * 119.99708 * 335.00463 * 18 16 2 40 40 H 1.07999 * 125.58733 * 0.02829 * 22 21 19 41 41 H 1.09001 * 115.54708 * 154.33515 * 25 24 23 42 42 H 1.08999 * 117.50270 * 359.97438 * 26 25 24 43 43 H 1.09004 * 117.50400 * 145.02186 * 26 25 24 44 44 H 1.09001 * 117.49985 * 214.97817 * 27 25 24 45 45 H 1.08995 * 117.49872 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0678 -1.2489 -0.0001 7 6 4.9757 -2.2740 0.0000 8 1 5.0086 -2.9662 0.8285 9 6 5.8537 -2.4237 -1.0647 10 7 6.0602 -1.4220 -1.8932 11 14 6.7423 -4.0466 -1.3215 12 1 6.3393 -5.0048 -0.2611 13 1 6.3847 -4.6017 -2.6516 14 1 8.2091 -3.8236 -1.2564 15 6 3.5713 -0.6888 -1.2643 16 6 2.0397 -0.7209 -1.2500 17 1 1.6566 -0.2213 -2.1398 18 7 1.5800 -2.1118 -1.2341 19 6 1.4514 -2.7923 -2.3903 20 8 1.7174 -2.2519 -3.4469 21 6 0.9898 -4.1907 -2.3742 22 6 0.8327 -4.9302 -3.4951 23 16 0.2880 -6.4897 -3.0553 24 6 0.2930 -6.0621 -1.4020 25 6 -0.1030 -6.9823 -0.2762 26 6 -0.3449 -8.4538 -0.6184 27 6 -1.5274 -7.5408 -0.2880 28 7 0.6816 -4.8450 -1.2514 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 1.6573 -0.2205 2.1398 33 1 1.6978 -1.7555 1.2385 34 1 3.9418 -1.2844 2.0984 35 1 3.9165 0.3402 1.3684 36 1 6.6740 -1.5265 -2.6369 37 1 3.9415 -1.2848 -2.0984 38 1 3.9143 0.3407 -1.3675 39 1 1.3681 -2.5429 -0.3913 40 1 1.0222 -4.5918 -4.5030 41 1 0.3413 -6.7572 0.6934 42 1 -0.2180 -8.7562 -1.6579 43 1 -0.0597 -9.1972 0.1260 44 1 -2.0200 -7.6835 0.6738 45 1 -2.1779 -7.2430 -1.1103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968699456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:04 Heat of formation + Delta-G solvation = 52.000327 kcal Electronic energy + Delta-G solvation = -27643.891373 eV Core-core repulsion = 23982.445413 eV Total energy + Delta-G solvation = -3661.445960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.32654 -39.01732 -37.63026 -36.93905 -34.08398 -32.71834 -30.97273 -30.49985 -29.17160 -27.32630 -25.96752 -24.18814 -23.57364 -22.77609 -21.98530 -21.04064 -20.88128 -19.69337 -18.66801 -18.34230 -16.67168 -16.41370 -16.29091 -15.16618 -15.07707 -14.89628 -14.49556 -14.16733 -13.85741 -13.75487 -13.55653 -13.39182 -13.17439 -12.81293 -12.55456 -12.48299 -12.09975 -11.91735 -11.73769 -11.52767 -11.34093 -11.12687 -11.01406 -10.88072 -10.87033 -10.69681 -10.44343 -10.16017 -9.87696 -9.84678 -9.67967 -9.56369 -9.50474 -9.40423 -8.78895 -8.40886 -8.26026 -6.59138 -5.71577 -3.13270 0.56857 1.20000 1.61508 2.15731 3.40489 3.46011 3.48245 3.49725 3.68391 3.81754 3.99428 4.45323 4.55065 4.60442 4.78019 5.04103 5.24258 5.26176 5.30153 5.32694 5.39977 5.42961 5.47684 5.51188 5.62218 5.70400 5.73286 5.94625 5.97268 6.00335 6.08433 6.21186 6.34447 6.42133 6.50038 6.59928 6.72217 6.80748 6.94477 7.06642 7.40051 7.51940 7.73049 7.86703 8.20805 8.52166 8.80691 9.27258 9.91649 10.47122 11.36474 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.004754 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.753316 B = 5888.440440 C = 7018.728138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.130 4.130 5 C 0.143 3.857 6 N -0.587 5.587 7 C -0.248 4.248 8 H 0.063 0.937 9 C 0.006 3.994 10 N -0.898 5.898 11 Si 0.894 3.106 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.160 3.840 16 C 0.123 3.877 17 H 0.077 0.923 18 N -0.676 5.676 19 C 0.589 3.411 20 O -0.543 6.543 21 C 0.028 3.972 22 C -0.231 4.231 23 S 0.188 5.812 24 C 0.056 3.944 25 C -0.082 4.082 26 C -0.170 4.170 27 C -0.160 4.160 28 N -0.434 5.434 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.018 0.982 36 H 0.253 0.747 37 H 0.097 0.903 38 H 0.026 0.974 39 H 0.405 0.595 40 H 0.189 0.811 41 H 0.135 0.865 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.008 -9.895 2.277 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.169 4.169 5 C 0.017 3.983 6 N -0.309 5.309 7 C -0.378 4.378 8 H 0.081 0.919 9 C -0.193 4.193 10 N -0.542 5.542 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.217 1.217 15 C 0.034 3.966 16 C 0.017 3.983 17 H 0.095 0.905 18 N -0.325 5.325 19 C 0.371 3.629 20 O -0.421 6.421 21 C -0.107 4.107 22 C -0.373 4.373 23 S 0.445 5.555 24 C -0.224 4.224 25 C -0.103 4.103 26 C -0.208 4.208 27 C -0.199 4.199 28 N -0.149 5.149 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.115 0.885 38 H 0.044 0.956 39 H 0.241 0.759 40 H 0.206 0.794 41 H 0.153 0.847 42 H 0.116 0.884 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.868 -10.096 1.397 19.708 hybrid contribution 0.919 -0.034 0.133 0.929 sum -15.948 -10.130 1.529 18.956 Atomic orbital electron populations 1.21853 0.96008 1.01456 1.00882 1.21304 0.94616 0.99817 0.95473 0.90365 1.22087 0.99190 0.99620 0.96030 1.20925 0.90715 0.96474 0.90217 1.43971 1.48206 1.39574 0.99175 1.19117 1.09676 1.02938 1.06046 0.91910 1.24969 0.97286 0.97128 0.99913 1.70011 1.37574 1.28864 1.17791 0.86351 0.79223 0.84249 0.77793 1.20342 1.21679 1.21687 1.21207 0.86559 0.97809 0.91059 1.21874 0.99076 0.80266 0.97041 0.90540 1.45651 1.64861 1.13687 1.08324 1.16926 0.78039 0.83204 0.84690 1.90787 1.51724 1.68632 1.30927 1.20618 1.05222 0.97725 0.87113 1.26570 1.07288 0.98067 1.05326 1.82531 1.59342 1.11190 1.02396 1.26137 1.04138 0.94665 0.97415 1.20393 1.00807 0.92443 0.96707 1.23149 1.02447 0.91993 1.03216 1.23138 0.90254 1.02383 1.04135 1.66807 1.12284 1.06012 1.29775 0.92976 0.93132 0.93150 0.92772 0.92537 0.92859 0.96412 0.93733 0.88493 0.95568 0.75894 0.79409 0.84687 0.88353 0.87203 0.87466 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.05 37.16 0.34 -1.67 16 2 C -0.09 -1.54 2.48 -90.58 -0.22 -1.77 16 3 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 4 C -0.13 -2.19 5.20 -26.61 -0.14 -2.32 16 5 C 0.14 2.96 6.52 -3.71 -0.02 2.94 16 6 N -0.59 -14.71 2.91 -172.31 -0.50 -15.21 16 7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 8 H 0.06 1.75 7.89 -52.48 -0.41 1.33 16 9 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 10 N -0.90 -27.15 11.19 55.49 0.62 -26.53 16 11 Si 0.89 22.84 29.59 -169.99 -5.03 17.81 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 C 0.16 3.97 4.91 -3.71 -0.02 3.96 16 16 C 0.12 2.48 2.24 -67.81 -0.15 2.33 16 17 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 18 N -0.68 -13.44 4.25 -54.81 -0.23 -13.67 16 19 C 0.59 12.39 7.76 -12.59 -0.10 12.29 16 20 O -0.54 -12.83 16.37 5.25 0.09 -12.74 16 21 C 0.03 0.51 6.70 -84.53 -0.57 -0.06 16 22 C -0.23 -3.54 10.62 29.65 0.31 -3.22 16 23 S 0.19 2.15 21.65 -107.50 -2.33 -0.18 16 24 C 0.06 0.74 6.99 -13.61 -0.10 0.65 16 25 C -0.08 -0.82 6.33 -91.78 -0.58 -1.40 16 26 C -0.17 -1.22 10.01 -26.73 -0.27 -1.49 16 27 C -0.16 -1.15 10.23 -26.73 -0.27 -1.43 16 28 N -0.43 -7.23 10.12 -8.51 -0.09 -7.32 16 29 H 0.05 0.74 7.54 -51.93 -0.39 0.35 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.98 6.40 -51.93 -0.33 0.65 16 34 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.10 2.83 6.03 -51.93 -0.31 2.52 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.40 7.73 6.16 -40.82 -0.25 7.47 16 40 H 0.19 2.71 8.03 -52.49 -0.42 2.28 16 41 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.10 0.67 7.21 -51.93 -0.37 0.30 16 43 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -33.23 375.44 -10.50 -43.72 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.67 Total: 6.65 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.02 Total: 1.80 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -0.20 Total: -62.73 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.81 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.33 Total: -0.18 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.23 -10.50 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968699456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.724 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds