Wall clock time and date at job start Tue Mar 31 2020 19:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46141 * 2 1 4 4 C 1.53039 * 109.46015 * 119.96055 * 2 1 3 5 5 C 1.53198 * 109.31029 * 181.38202 * 4 2 1 6 6 N 1.46928 * 108.77296 * 305.36530 * 5 4 2 7 7 C 1.36939 * 120.62789 * 233.62527 * 6 5 4 8 8 H 1.08003 * 119.99832 * 27.66737 * 7 6 5 9 9 C 1.38815 * 120.00268 * 207.66074 * 7 6 5 10 10 N 1.31621 * 119.99487 * 17.38120 * 9 7 6 11 11 Si 1.86799 * 119.99959 * 197.37556 * 9 7 6 12 12 H 1.48490 * 109.47306 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46904 * 120.00434 * 11 9 7 14 14 H 1.48505 * 109.47019 * 239.99816 * 11 9 7 15 15 C 1.46924 * 118.74260 * 53.61405 * 6 5 4 16 16 C 1.53041 * 109.45421 * 240.02709 * 2 1 3 17 17 H 1.08998 * 109.49818 * 58.63530 * 16 2 1 18 18 N 1.46495 * 109.50101 * 298.56495 * 16 2 1 19 19 C 1.34776 * 120.00095 * 155.00055 * 18 16 2 20 20 O 1.21632 * 120.00093 * 0.02562 * 19 18 16 21 21 C 1.47269 * 120.00075 * 179.97438 * 19 18 16 22 22 C 1.35204 * 123.14203 * 179.70681 * 21 19 18 23 23 S 1.70937 * 108.82801 * 179.91102 * 22 21 19 24 24 C 1.70776 * 91.12857 * 0.29903 * 23 22 21 25 25 C 1.50700 * 124.71846 * 179.82170 * 24 23 22 26 26 C 1.52994 * 117.50114 * 8.62889 * 25 24 23 27 27 C 1.52998 * 117.50107 * 300.00168 * 25 24 23 28 28 N 1.28645 * 110.55626 * 359.82869 * 24 23 22 29 29 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46896 * 299.97247 * 1 2 3 31 31 H 1.08999 * 109.47051 * 59.96879 * 1 2 3 32 32 H 1.08992 * 109.49997 * 301.33245 * 4 2 1 33 33 H 1.09001 * 109.49845 * 61.43158 * 4 2 1 34 34 H 1.09001 * 109.58494 * 185.57998 * 5 4 2 35 35 H 1.08998 * 109.70284 * 65.22259 * 5 4 2 36 36 H 0.96997 * 119.99492 * 179.97438 * 10 9 7 37 37 H 1.08994 * 109.58786 * 186.60273 * 15 6 5 38 38 H 1.08997 * 109.58528 * 66.17053 * 15 6 5 39 39 H 0.97002 * 119.99708 * 335.00463 * 18 16 2 40 40 H 1.07999 * 125.58733 * 0.02829 * 22 21 19 41 41 H 1.09001 * 115.54708 * 154.33515 * 25 24 23 42 42 H 1.08999 * 117.50270 * 359.97438 * 26 25 24 43 43 H 1.09004 * 117.50400 * 145.02186 * 26 25 24 44 44 H 1.09001 * 117.49985 * 214.97817 * 27 25 24 45 45 H 1.08995 * 117.49872 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0678 -1.2489 -0.0001 7 6 4.9757 -2.2740 0.0000 8 1 5.0086 -2.9662 0.8285 9 6 5.8537 -2.4237 -1.0647 10 7 6.0602 -1.4220 -1.8932 11 14 6.7423 -4.0466 -1.3215 12 1 6.3393 -5.0048 -0.2611 13 1 6.3847 -4.6017 -2.6516 14 1 8.2091 -3.8236 -1.2564 15 6 3.5713 -0.6888 -1.2643 16 6 2.0397 -0.7209 -1.2500 17 1 1.6566 -0.2213 -2.1398 18 7 1.5800 -2.1118 -1.2341 19 6 1.4514 -2.7923 -2.3903 20 8 1.7174 -2.2519 -3.4469 21 6 0.9898 -4.1907 -2.3742 22 6 0.8327 -4.9302 -3.4951 23 16 0.2880 -6.4897 -3.0553 24 6 0.2930 -6.0621 -1.4020 25 6 -0.1030 -6.9823 -0.2762 26 6 -0.3449 -8.4538 -0.6184 27 6 -1.5274 -7.5408 -0.2880 28 7 0.6816 -4.8450 -1.2514 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 1.6573 -0.2205 2.1398 33 1 1.6978 -1.7555 1.2385 34 1 3.9418 -1.2844 2.0984 35 1 3.9165 0.3402 1.3684 36 1 6.6740 -1.5265 -2.6369 37 1 3.9415 -1.2848 -2.0984 38 1 3.9143 0.3407 -1.3675 39 1 1.3681 -2.5429 -0.3913 40 1 1.0222 -4.5918 -4.5030 41 1 0.3413 -6.7572 0.6934 42 1 -0.2180 -8.7562 -1.6579 43 1 -0.0597 -9.1972 0.1260 44 1 -2.0200 -7.6835 0.6738 45 1 -2.1779 -7.2430 -1.1103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968699456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:03 Heat of formation + Delta-G solvation = 30.668936 kcal Electronic energy + Delta-G solvation = -27644.816372 eV Core-core repulsion = 23982.445413 eV Total energy + Delta-G solvation = -3662.370958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68160 -40.42248 -39.00493 -37.92051 -35.97117 -34.36155 -32.86708 -31.71141 -30.82485 -28.99660 -27.16218 -25.91823 -24.94244 -23.55884 -23.30522 -22.77256 -21.90886 -20.99362 -20.32018 -19.60713 -18.64188 -17.68913 -17.23825 -16.89968 -16.59304 -16.39694 -15.77680 -15.61491 -15.43884 -15.15934 -15.01432 -14.77954 -14.61528 -14.43179 -14.15729 -13.64541 -13.30126 -13.20686 -13.04709 -13.02846 -12.79210 -12.66840 -12.53115 -12.38361 -12.24820 -11.98280 -11.88366 -11.60099 -11.51129 -11.37857 -11.14782 -11.11185 -10.87894 -10.59446 -10.58122 -10.08783 -9.73434 -8.67411 -7.89718 -5.33390 -0.56639 0.17778 0.51460 0.88945 1.33551 1.36567 1.45523 2.18802 2.40565 2.44928 2.77241 2.98867 3.25618 3.64382 3.68306 3.81005 3.85059 3.96154 4.04034 4.06830 4.09936 4.14245 4.41035 4.48178 4.63881 4.66951 4.68923 4.76390 4.81304 4.87516 4.92238 5.01509 5.05622 5.09604 5.12994 5.19973 5.21970 5.23381 5.42679 5.48986 5.56115 5.66917 5.67297 6.32802 6.36072 6.67423 7.11181 7.21862 7.84660 8.35088 9.15381 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.004754 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.753316 B = 5888.440440 C = 7018.728138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.084 0.916 4 C -0.116 4.116 5 C 0.137 3.863 6 N -0.600 5.600 7 C -0.247 4.247 8 H 0.065 0.935 9 C -0.050 4.050 10 N -0.932 5.932 11 Si 0.950 3.050 12 H -0.264 1.264 13 H -0.302 1.302 14 H -0.286 1.286 15 C 0.172 3.828 16 C 0.132 3.868 17 H 0.067 0.933 18 N -0.669 5.669 19 C 0.579 3.421 20 O -0.583 6.583 21 C -0.005 4.005 22 C -0.252 4.252 23 S 0.290 5.710 24 C 0.047 3.953 25 C -0.114 4.114 26 C -0.155 4.155 27 C -0.145 4.145 28 N -0.466 5.466 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.019 0.981 36 H 0.245 0.755 37 H 0.047 0.953 38 H 0.004 0.996 39 H 0.409 0.591 40 H 0.188 0.812 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.567 -12.287 4.134 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 H 0.102 0.898 4 C -0.155 4.155 5 C 0.012 3.988 6 N -0.324 5.324 7 C -0.378 4.378 8 H 0.083 0.917 9 C -0.245 4.245 10 N -0.578 5.578 11 Si 0.779 3.221 12 H -0.188 1.188 13 H -0.229 1.229 14 H -0.213 1.213 15 C 0.045 3.955 16 C 0.025 3.975 17 H 0.085 0.915 18 N -0.318 5.318 19 C 0.364 3.636 20 O -0.465 6.465 21 C -0.140 4.140 22 C -0.394 4.394 23 S 0.548 5.452 24 C -0.232 4.232 25 C -0.135 4.135 26 C -0.193 4.193 27 C -0.183 4.183 28 N -0.181 5.181 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.022 0.978 39 H 0.247 0.753 40 H 0.206 0.794 41 H 0.148 0.852 42 H 0.122 0.878 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.459 -12.513 3.310 23.370 hybrid contribution 1.671 0.620 -0.427 1.833 sum -17.787 -11.892 2.882 21.590 Atomic orbital electron populations 1.21754 0.93189 1.01737 1.02478 1.21280 0.96812 0.99308 0.93147 0.89813 1.21960 0.95828 1.00079 0.97673 1.21142 0.93492 0.96105 0.88064 1.44158 1.48039 1.39461 1.00709 1.19411 1.09221 1.03480 1.05640 0.91736 1.25662 0.98804 0.99809 1.00259 1.70171 1.38680 1.30636 1.18350 0.85452 0.78267 0.81178 0.77222 1.18777 1.22925 1.21271 1.20876 0.89735 0.95284 0.89654 1.21636 0.95625 0.81188 0.99006 0.91454 1.45584 1.64347 1.13466 1.08404 1.17493 0.77291 0.84596 0.84257 1.90741 1.53586 1.69983 1.32158 1.20299 1.08056 0.96803 0.88832 1.26866 1.06934 1.00676 1.04950 1.82073 1.56501 1.06926 0.99663 1.26823 1.02407 0.94171 0.99781 1.20547 1.03582 0.93797 0.95613 1.23315 1.01409 0.90443 1.04111 1.23282 0.89089 1.00653 1.05302 1.66779 1.14227 1.07608 1.29508 0.93339 0.90190 0.92922 0.88782 0.92818 0.92623 0.96311 0.94554 0.93415 0.97846 0.75324 0.79444 0.85197 0.87812 0.85303 0.85614 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 9.05 71.98 0.65 -2.74 16 2 C -0.09 -2.75 2.48 -10.77 -0.03 -2.78 16 3 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 4 C -0.12 -3.67 5.20 30.67 0.16 -3.51 16 5 C 0.14 5.58 6.52 86.36 0.56 6.14 16 6 N -0.60 -30.87 2.91 -699.07 -2.04 -32.91 16 7 C -0.25 -14.14 9.58 84.03 0.81 -13.33 16 8 H 0.06 3.61 7.89 -2.91 -0.02 3.59 16 9 C -0.05 -2.98 4.91 84.86 0.42 -2.57 16 10 N -0.93 -59.18 11.19 21.65 0.24 -58.94 16 11 Si 0.95 48.27 29.59 68.60 2.03 50.30 16 12 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.30 -15.77 7.11 99.48 0.71 -15.06 16 14 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 15 C 0.17 8.96 4.91 86.37 0.42 9.39 16 16 C 0.13 5.46 2.24 45.07 0.10 5.56 16 17 H 0.07 2.90 7.58 -2.39 -0.02 2.89 16 18 N -0.67 -27.46 4.25 -445.57 -1.89 -29.36 16 19 C 0.58 25.60 7.76 86.62 0.67 26.27 16 20 O -0.58 -29.46 16.37 -4.13 -0.07 -29.52 16 21 C 0.00 -0.19 6.70 40.56 0.27 0.09 16 22 C -0.25 -7.76 10.62 67.12 0.71 -7.05 16 23 S 0.29 5.99 21.65 -56.49 -1.22 4.76 16 24 C 0.05 1.17 6.99 88.58 0.62 1.79 16 25 C -0.11 -1.99 6.33 -11.54 -0.07 -2.06 16 26 C -0.15 -1.63 10.01 30.59 0.31 -1.33 16 27 C -0.14 -1.56 10.23 30.59 0.31 -1.25 16 28 N -0.47 -15.49 10.12 -180.83 -1.83 -17.32 16 29 H 0.05 1.27 7.54 -2.39 -0.02 1.25 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.05 1.75 6.40 -2.39 -0.02 1.73 16 34 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.05 2.97 6.03 -2.39 -0.01 2.96 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.41 15.83 6.16 -92.71 -0.57 15.26 16 40 H 0.19 5.59 8.03 -2.91 -0.02 5.56 16 41 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.10 0.98 7.21 -2.39 -0.02 0.96 16 43 H 0.13 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -77.59 375.44 1.58 -76.02 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.44 Total: 24.33 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 5.92 Total: 12.63 kcal Atomic # 7 Polarization: -133.01 SS G_CDS: -5.52 Total: -138.52 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.07 Total: -29.52 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Atomic # 16 Polarization: 5.99 SS G_CDS: -1.22 Total: 4.76 kcal Total: -77.59 1.58 -76.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968699456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.686 kcal (2) G-P(sol) polarization free energy of solvation -77.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds