Wall clock time and date at job start Tue Mar 31 2020 19:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.45014 * 2 1 4 4 C 1.53041 * 109.45997 * 119.96914 * 2 1 3 5 5 C 1.52757 * 109.38269 * 181.25956 * 4 2 1 6 6 N 1.46927 * 109.00935 * 305.58851 * 5 4 2 7 7 C 1.36938 * 120.62991 * 233.58501 * 6 5 4 8 8 H 1.08002 * 119.99864 * 152.50943 * 7 6 5 9 9 C 1.38813 * 119.99981 * 332.78113 * 7 6 5 10 10 N 1.31620 * 119.99609 * 159.13521 * 9 7 6 11 11 Si 1.86793 * 120.00026 * 339.13733 * 9 7 6 12 12 H 1.48507 * 109.47258 * 93.09371 * 11 9 7 13 13 H 1.48498 * 109.47125 * 213.08933 * 11 9 7 14 14 H 1.48504 * 109.47196 * 333.09570 * 11 9 7 15 15 C 1.46926 * 118.73934 * 53.30929 * 6 5 4 16 16 C 1.53040 * 109.45799 * 240.03521 * 2 1 3 17 17 H 1.08997 * 109.52954 * 298.58395 * 16 2 1 18 18 N 1.46508 * 109.49965 * 58.66498 * 16 2 1 19 19 C 1.34774 * 120.00196 * 204.83684 * 18 16 2 20 20 O 1.21635 * 119.99750 * 0.02562 * 19 18 16 21 21 C 1.47268 * 120.00010 * 179.97438 * 19 18 16 22 22 C 1.35206 * 123.14179 * 180.02562 * 21 19 18 23 23 S 1.70939 * 108.82696 * 179.97438 * 22 21 19 24 24 C 1.70768 * 91.12872 * 0.02562 * 23 22 21 25 25 C 1.50702 * 124.72000 * 179.97438 * 24 23 22 26 26 C 1.52998 * 117.49801 * 8.65106 * 25 24 23 27 27 C 1.53002 * 117.50073 * 300.02748 * 25 24 23 28 28 N 1.28649 * 110.55975 * 359.76669 * 24 23 22 29 29 H 1.09005 * 109.46494 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47018 * 299.96291 * 1 2 3 31 31 H 1.09000 * 109.47037 * 59.96739 * 1 2 3 32 32 H 1.08996 * 109.49657 * 301.33763 * 4 2 1 33 33 H 1.09000 * 109.49571 * 61.43546 * 4 2 1 34 34 H 1.08999 * 109.51074 * 185.70606 * 5 4 2 35 35 H 1.08997 * 109.43523 * 65.42127 * 5 4 2 36 36 H 0.97003 * 119.99825 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.58898 * 66.43000 * 15 6 5 38 38 H 1.08999 * 109.58704 * 186.71632 * 15 6 5 39 39 H 0.97000 * 119.99388 * 24.83235 * 18 16 2 40 40 H 1.07998 * 125.58467 * 0.02562 * 22 21 19 41 41 H 1.09001 * 115.55069 * 154.35087 * 25 24 23 42 42 H 1.09003 * 117.50151 * 359.97438 * 26 25 24 43 43 H 1.08997 * 117.49992 * 145.01910 * 26 25 24 44 44 H 1.08993 * 117.50035 * 214.97803 * 27 25 24 45 45 H 1.09000 * 117.49475 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5672 -0.6924 1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9758 -2.2740 -0.0001 8 1 5.0134 -2.9619 -0.8319 9 6 5.8438 -2.4325 1.0715 10 7 6.4152 -3.5981 1.2887 11 14 6.2008 -0.9915 2.2052 12 1 5.2684 -1.0277 3.3605 13 1 7.5997 -1.0820 2.6952 14 1 6.0180 0.2807 1.4613 15 6 3.5714 -0.6885 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6978 -1.7556 -1.2390 18 7 1.5256 -0.0486 -2.4460 19 6 1.4002 -0.7312 -3.6013 20 8 1.7135 -1.9055 -3.6510 21 6 0.8827 -0.0557 -4.8033 22 6 0.7305 -0.6787 -5.9936 23 16 0.1077 0.4400 -7.1261 24 6 0.0871 1.6744 -5.9462 25 6 -0.3739 3.0881 -6.1910 26 6 -1.0448 3.3901 -7.5324 27 6 0.3704 3.9001 -7.2529 28 7 0.5157 1.2283 -4.8182 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5132 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 1.6573 -0.2208 2.1398 33 1 1.6979 -1.7557 1.2382 34 1 3.9347 -1.2909 2.0978 35 1 3.9098 0.3367 1.3715 36 1 7.0220 -3.7088 2.0373 37 1 3.9143 0.3410 -1.3674 38 1 3.9438 -1.2830 -2.0987 39 1 1.2753 0.8877 -2.4062 40 1 0.9635 -1.7138 -6.1955 41 1 -0.7393 3.6220 -5.3137 42 1 -1.1524 2.5664 -8.2382 43 1 -1.8518 4.1228 -7.5379 44 1 0.4945 4.9681 -7.0745 45 1 1.1938 3.4118 -7.7742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968699457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:06 Heat of formation + Delta-G solvation = 31.552624 kcal Electronic energy + Delta-G solvation = -26616.975208 eV Core-core repulsion = 22954.642569 eV Total energy + Delta-G solvation = -3662.332639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.74449 -40.46753 -39.24481 -37.94217 -36.34688 -34.61370 -33.44629 -31.77287 -30.92541 -29.27097 -27.24341 -25.82164 -25.08307 -23.58354 -23.29253 -22.96541 -21.83360 -21.35406 -20.72673 -19.51008 -18.81729 -17.81702 -17.25890 -17.22257 -16.84227 -16.55178 -15.99609 -15.67609 -15.37791 -15.27534 -15.25361 -14.89979 -14.73739 -14.49866 -14.43893 -13.83383 -13.63762 -13.36064 -13.27137 -13.05510 -12.75130 -12.65911 -12.53850 -12.38432 -12.24702 -11.89012 -11.83939 -11.65409 -11.53912 -11.44468 -11.34158 -11.20898 -10.91355 -10.80927 -10.60909 -10.27763 -9.80229 -8.97325 -8.19962 -5.54218 -0.58662 0.16014 0.51663 0.80951 1.28278 1.40264 1.50957 2.05034 2.20619 2.39236 2.70184 2.98982 3.02811 3.31452 3.60523 3.68415 3.83167 3.86460 3.95806 4.02865 4.07196 4.12064 4.26848 4.34652 4.40917 4.46979 4.53404 4.69811 4.77808 4.78163 4.79901 4.90254 4.94567 4.98942 5.03065 5.07845 5.10699 5.11359 5.22441 5.29432 5.35462 5.50985 5.80843 6.07625 6.23141 6.56921 6.85387 7.09398 7.55985 7.94364 9.00344 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.002715 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.704236 B =10311.971196 C =10656.083870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 H 0.091 0.909 4 C -0.119 4.119 5 C 0.114 3.886 6 N -0.615 5.615 7 C -0.257 4.257 8 H 0.036 0.964 9 C -0.036 4.036 10 N -0.958 5.958 11 Si 0.959 3.041 12 H -0.265 1.265 13 H -0.309 1.309 14 H -0.259 1.259 15 C 0.146 3.854 16 C 0.145 3.855 17 H 0.057 0.943 18 N -0.688 5.688 19 C 0.584 3.416 20 O -0.576 6.576 21 C -0.006 4.006 22 C -0.248 4.248 23 S 0.294 5.706 24 C 0.047 3.953 25 C -0.107 4.107 26 C -0.153 4.153 27 C -0.156 4.156 28 N -0.462 5.462 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.040 0.960 38 H 0.031 0.969 39 H 0.417 0.583 40 H 0.188 0.812 41 H 0.138 0.862 42 H 0.104 0.896 43 H 0.130 0.870 44 H 0.123 0.877 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.818 20.208 -17.697 33.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 H 0.109 0.891 4 C -0.159 4.159 5 C -0.010 4.010 6 N -0.340 5.340 7 C -0.387 4.387 8 H 0.054 0.946 9 C -0.230 4.230 10 N -0.604 5.604 11 Si 0.786 3.214 12 H -0.191 1.191 13 H -0.238 1.238 14 H -0.183 1.183 15 C 0.019 3.981 16 C 0.038 3.962 17 H 0.075 0.925 18 N -0.338 5.338 19 C 0.369 3.631 20 O -0.455 6.455 21 C -0.141 4.141 22 C -0.390 4.390 23 S 0.553 5.447 24 C -0.231 4.231 25 C -0.129 4.129 26 C -0.191 4.191 27 C -0.195 4.195 28 N -0.178 5.178 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.255 0.745 40 H 0.205 0.795 41 H 0.155 0.845 42 H 0.122 0.878 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.741 19.575 -18.192 33.827 hybrid contribution 1.310 -0.686 1.533 2.130 sum -19.431 18.889 -16.659 31.810 Atomic orbital electron populations 1.21763 0.92900 1.01707 1.02896 1.21270 0.97137 0.99728 0.92111 0.89100 1.21926 0.94960 1.00662 0.98324 1.21474 0.94797 0.96935 0.87838 1.44337 1.48279 1.40140 1.01268 1.18769 1.11145 1.02933 1.05825 0.94647 1.25977 0.97378 0.99289 1.00403 1.69999 1.34309 1.24103 1.31966 0.85736 0.75809 0.80905 0.78954 1.19084 1.23808 1.18293 1.21243 0.92735 0.96474 0.87599 1.21383 0.93780 0.96561 0.84449 0.92457 1.45690 1.64094 1.15216 1.08805 1.17540 0.77272 0.85371 0.82903 1.90840 1.52222 1.17396 1.85085 1.20136 1.08270 0.90530 0.95152 1.26906 1.06285 1.08168 0.97678 1.82324 1.53725 0.97005 1.11652 1.26779 1.02199 1.01897 0.92255 1.20558 1.07635 0.87801 0.96874 1.23310 0.97057 1.04110 0.94582 1.23283 0.95880 1.01184 0.99173 1.66780 1.13724 1.10664 1.26619 0.93884 0.90126 0.91989 0.88171 0.93156 0.92868 0.93855 0.92739 0.94254 0.95060 0.74481 0.79451 0.84465 0.87805 0.85173 0.85914 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.02 71.98 0.65 -2.47 16 2 C -0.08 -2.42 2.27 -10.76 -0.02 -2.45 16 3 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 4 C -0.12 -3.97 5.34 30.53 0.16 -3.81 16 5 C 0.11 4.87 4.18 86.22 0.36 5.23 16 6 N -0.62 -31.33 2.78 -699.93 -1.94 -33.27 16 7 C -0.26 -15.90 10.03 84.03 0.84 -15.05 16 8 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 9 C -0.04 -2.20 5.23 84.86 0.44 -1.76 16 10 N -0.96 -63.09 13.97 21.65 0.30 -62.79 16 11 Si 0.96 47.82 24.35 68.60 1.67 49.49 16 12 H -0.26 -12.13 6.62 99.48 0.66 -11.48 16 13 H -0.31 -15.60 7.11 99.48 0.71 -14.90 16 14 H -0.26 -12.26 6.64 99.48 0.66 -11.60 16 15 C 0.15 6.52 6.09 86.36 0.53 7.04 16 16 C 0.14 5.30 2.06 45.07 0.09 5.40 16 17 H 0.06 2.52 7.58 -2.39 -0.02 2.50 16 18 N -0.69 -21.69 4.37 -445.55 -1.95 -23.63 16 19 C 0.58 20.61 7.76 86.62 0.67 21.28 16 20 O -0.58 -25.34 16.38 -4.14 -0.07 -25.41 16 21 C -0.01 -0.16 6.70 40.56 0.27 0.11 16 22 C -0.25 -5.72 10.62 67.12 0.71 -5.01 16 23 S 0.29 4.08 21.65 -56.49 -1.22 2.86 16 24 C 0.05 0.81 6.99 88.58 0.62 1.43 16 25 C -0.11 -1.14 6.33 -11.54 -0.07 -1.21 16 26 C -0.15 -0.75 10.01 30.59 0.31 -0.45 16 27 C -0.16 -1.07 10.23 30.60 0.31 -0.76 16 28 N -0.46 -11.02 10.12 -180.84 -1.83 -12.85 16 29 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.32 7.35 -2.39 -0.02 1.30 16 32 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 2.50 4.49 -2.39 -0.01 2.49 16 35 H 0.04 1.72 7.08 -2.39 -0.02 1.71 16 36 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.03 1.58 7.93 -2.39 -0.02 1.56 16 39 H 0.42 10.91 7.82 -92.71 -0.73 10.18 16 40 H 0.19 4.29 8.03 -2.91 -0.02 4.27 16 41 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.10 0.41 7.21 -2.39 -0.02 0.39 16 43 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -81.08 372.14 1.03 -80.05 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.19 Total: 18.03 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 5.88 Total: 7.52 kcal Atomic # 7 Polarization: -127.12 SS G_CDS: -5.42 Total: -132.54 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.07 Total: -25.41 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.67 Total: 49.49 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.22 Total: 2.86 kcal Total: -81.08 1.03 -80.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968699457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.607 kcal (2) G-P(sol) polarization free energy of solvation -81.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds