Wall clock time and date at job start Tue Mar 31 2020 19:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.46670 * 2 1 4 4 C 1.53349 * 109.41565 * 240.09708 * 2 1 3 5 5 C 1.53194 * 109.14918 * 178.67647 * 4 2 1 6 6 N 1.46934 * 108.89214 * 54.57866 * 5 4 2 7 7 C 1.36935 * 120.62776 * 126.34278 * 6 5 4 8 8 H 1.08003 * 120.00334 * 331.82288 * 7 6 5 9 9 C 1.38816 * 120.00109 * 151.82327 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07479 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07501 * 9 7 6 12 12 H 1.48500 * 109.47341 * 59.99642 * 11 9 7 13 13 H 1.48504 * 109.47235 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46651 * 299.99824 * 11 9 7 15 15 C 1.46917 * 118.73910 * 306.32295 * 6 5 4 16 16 C 1.53042 * 109.45796 * 119.97381 * 2 1 3 17 17 H 1.09003 * 109.52928 * 61.41644 * 16 2 1 18 18 N 1.46496 * 109.49765 * 301.33122 * 16 2 1 19 19 C 1.34784 * 120.00104 * 155.16276 * 18 16 2 20 20 O 1.21636 * 119.99584 * 0.02562 * 19 18 16 21 21 C 1.47259 * 120.00154 * 180.02562 * 19 18 16 22 22 C 1.35206 * 123.14311 * 179.70616 * 21 19 18 23 23 S 1.70943 * 108.82930 * 179.87261 * 22 21 19 24 24 C 1.70767 * 91.12874 * 0.32997 * 23 22 21 25 25 C 1.50693 * 124.72156 * 179.84431 * 24 23 22 26 26 C 1.53000 * 117.50088 * 8.70292 * 25 24 23 27 27 C 1.53002 * 117.49832 * 300.04525 * 25 24 23 28 28 N 1.28649 * 110.55960 * 359.80880 * 24 23 22 29 29 H 1.09000 * 109.46817 * 300.02558 * 1 2 3 30 30 H 1.08991 * 109.47274 * 60.02564 * 1 2 3 31 31 H 1.08995 * 109.47589 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.68610 * 58.71674 * 4 2 1 33 33 H 1.09002 * 109.47692 * 298.51393 * 4 2 1 34 34 H 1.09003 * 109.58905 * 294.72177 * 5 4 2 35 35 H 1.09001 * 109.58865 * 174.43764 * 5 4 2 36 36 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.58812 * 173.39821 * 15 6 5 38 38 H 1.09007 * 109.58397 * 293.82038 * 15 6 5 39 39 H 0.97001 * 120.00542 * 335.17057 * 18 16 2 40 40 H 1.07998 * 125.58205 * 0.02562 * 22 21 19 41 41 H 1.09004 * 115.55622 * 154.37904 * 25 24 23 42 42 H 1.09006 * 117.49720 * 0.02562 * 26 25 24 43 43 H 1.08995 * 117.50066 * 145.02080 * 26 25 24 44 44 H 1.09000 * 117.50461 * 214.97985 * 27 25 24 45 45 H 1.08997 * 117.49501 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7210 -1.2537 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2490 -0.0001 7 6 4.9763 -2.2735 -0.0002 8 1 5.0042 -2.9704 -0.8249 9 6 5.8614 -2.4166 1.0595 10 7 6.0659 -1.4128 1.8861 11 14 6.7622 -4.0332 1.3125 12 1 7.5860 -4.3338 0.1141 13 1 7.6415 -3.9287 2.5047 14 1 5.7747 -5.1228 1.5204 15 6 3.5714 -0.6889 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6977 -1.7558 1.2388 18 7 1.5256 -0.0490 2.4459 19 6 1.4002 -0.7318 3.6012 20 8 1.7143 -1.9058 3.6509 21 6 0.8828 -0.0565 4.8032 22 6 0.7256 -0.6810 5.9921 23 16 0.1087 0.4392 7.1264 24 6 0.0870 1.6735 5.9464 25 6 -0.3739 3.0871 6.1914 26 6 -0.6621 3.4957 7.6374 27 6 -1.8178 3.2891 6.6552 28 7 0.5194 1.2287 4.8194 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5134 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6592 -0.2217 -2.1447 33 1 1.6979 -1.7560 -1.2421 34 1 3.9143 0.3410 -1.3673 35 1 3.9437 -1.2829 -2.0987 36 1 6.6846 -1.5126 2.6264 37 1 3.9417 -1.2849 2.0983 38 1 3.9143 0.3407 1.3673 39 1 1.2753 0.8874 2.4064 40 1 0.9549 -1.7171 6.1928 41 1 0.0527 3.8419 5.5307 42 1 -0.5180 2.7420 8.4116 43 1 -0.4255 4.5192 7.9279 44 1 -2.3411 4.1768 6.3000 45 1 -2.4345 2.3994 6.7827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968699459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:13 Heat of formation + Delta-G solvation = 49.996942 kcal Electronic energy + Delta-G solvation = -26851.913227 eV Core-core repulsion = 23190.380394 eV Total energy + Delta-G solvation = -3661.532833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.44587 -38.99440 -37.68503 -37.06140 -34.29232 -33.03061 -30.92932 -30.62654 -28.95136 -27.34871 -26.07394 -24.20418 -23.72054 -22.88334 -21.87913 -21.00145 -20.76361 -19.75193 -19.24020 -18.30982 -16.78376 -16.49894 -16.38547 -15.40353 -15.21400 -14.94742 -14.61438 -14.15829 -13.86070 -13.67082 -13.65708 -13.40764 -13.22396 -12.90060 -12.61615 -12.36691 -12.22074 -11.99155 -11.83356 -11.58783 -11.53311 -11.22842 -10.98897 -10.85207 -10.66218 -10.58216 -10.40381 -10.13538 -10.02349 -9.94993 -9.86685 -9.70439 -9.54222 -9.41567 -8.92317 -8.43406 -8.37273 -6.60208 -5.70650 -3.14288 0.43113 1.06379 1.48348 1.99493 3.33416 3.45519 3.51624 3.53418 3.54161 3.66946 3.79481 4.34098 4.48968 4.57669 4.64443 4.90164 5.16699 5.17858 5.23928 5.28089 5.32926 5.40064 5.45336 5.57497 5.59444 5.61981 5.64929 5.84941 5.97465 6.08451 6.09004 6.17274 6.30353 6.45103 6.51205 6.59021 6.79132 6.80656 6.99696 7.02103 7.30404 7.39540 7.77870 7.87489 8.02381 8.52813 8.64530 9.27739 9.91858 10.47197 11.37264 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.003301 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.308322 B = 8481.370013 C = 9786.484018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.257 4.257 8 H 0.066 0.934 9 C 0.006 3.994 10 N -0.899 5.899 11 Si 0.903 3.097 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.167 3.833 16 C 0.123 3.877 17 H 0.083 0.917 18 N -0.697 5.697 19 C 0.587 3.413 20 O -0.527 6.527 21 C 0.023 3.977 22 C -0.228 4.228 23 S 0.196 5.804 24 C 0.054 3.946 25 C -0.083 4.083 26 C -0.170 4.170 27 C -0.160 4.160 28 N -0.438 5.438 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.018 0.982 35 H 0.055 0.945 36 H 0.254 0.746 37 H 0.094 0.906 38 H 0.017 0.983 39 H 0.401 0.599 40 H 0.190 0.810 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.459 10.745 10.283 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.386 4.386 8 H 0.083 0.917 9 C -0.193 4.193 10 N -0.543 5.543 11 Si 0.732 3.268 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.209 1.209 15 C 0.040 3.960 16 C 0.018 3.982 17 H 0.101 0.899 18 N -0.347 5.347 19 C 0.369 3.631 20 O -0.403 6.403 21 C -0.112 4.112 22 C -0.370 4.370 23 S 0.453 5.547 24 C -0.225 4.225 25 C -0.105 4.105 26 C -0.208 4.208 27 C -0.199 4.199 28 N -0.153 5.153 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.036 0.964 39 H 0.236 0.764 40 H 0.207 0.793 41 H 0.153 0.847 42 H 0.117 0.883 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.293 10.162 10.973 22.863 hybrid contribution 0.819 -0.796 -0.618 1.299 sum -16.474 9.366 10.355 21.595 Atomic orbital electron populations 1.21848 0.96015 1.01494 1.00812 1.21347 0.94592 0.99708 0.95428 0.91439 1.22122 0.98928 1.00019 0.95384 1.20963 0.90844 0.96483 0.90158 1.43943 1.48082 1.39853 0.99154 1.19100 1.09540 1.03126 1.06847 0.91665 1.25048 0.97148 0.97372 0.99709 1.70013 1.37233 1.29056 1.17960 0.86369 0.79205 0.83979 0.77214 1.20920 1.21656 1.20886 1.21093 0.86364 0.97516 0.91015 1.22055 0.98451 0.96350 0.81353 0.89912 1.45871 1.64412 1.14551 1.09855 1.16990 0.78366 0.85868 0.81857 1.90860 1.50006 1.15354 1.84103 1.20624 1.05331 0.89140 0.96089 1.26621 1.06656 1.07042 0.96679 1.82607 1.57108 1.00210 1.14733 1.26147 1.03888 1.00200 0.92247 1.20394 1.00132 0.90404 0.99521 1.23167 1.02596 1.03605 0.91408 1.23161 0.90206 1.04170 1.02376 1.66812 1.12139 1.11623 1.24767 0.93136 0.93128 0.93001 0.92552 0.92109 0.96427 0.92627 0.93647 0.88754 0.96444 0.76422 0.79261 0.84721 0.88313 0.87158 0.87407 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.02 37.16 0.34 -1.72 16 2 C -0.09 -1.56 2.27 -90.42 -0.21 -1.77 16 3 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.12 -2.19 5.39 -26.45 -0.14 -2.33 16 5 C 0.14 3.03 6.50 -3.71 -0.02 3.00 16 6 N -0.59 -15.33 2.99 -172.31 -0.52 -15.85 16 7 C -0.26 -7.36 9.58 -15.06 -0.14 -7.50 16 8 H 0.07 1.82 7.89 -52.48 -0.41 1.41 16 9 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 10 N -0.90 -27.44 11.20 55.49 0.62 -26.82 16 11 Si 0.90 22.93 29.59 -169.99 -5.03 17.90 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 15 C 0.17 4.24 4.88 -3.71 -0.02 4.22 16 16 C 0.12 2.54 2.07 -67.81 -0.14 2.40 16 17 H 0.08 1.91 7.58 -51.93 -0.39 1.52 16 18 N -0.70 -12.91 4.37 -54.81 -0.24 -13.15 16 19 C 0.59 11.58 7.76 -12.59 -0.10 11.49 16 20 O -0.53 -12.34 16.38 5.25 0.09 -12.26 16 21 C 0.02 0.37 6.70 -84.53 -0.57 -0.19 16 22 C -0.23 -3.14 10.62 29.65 0.31 -2.82 16 23 S 0.20 1.92 21.65 -107.50 -2.33 -0.41 16 24 C 0.05 0.62 6.99 -13.61 -0.10 0.52 16 25 C -0.08 -0.68 6.33 -91.77 -0.58 -1.26 16 26 C -0.17 -0.96 10.01 -26.69 -0.27 -1.22 16 27 C -0.16 -0.95 10.24 -26.69 -0.27 -1.22 16 28 N -0.44 -6.35 10.12 -8.51 -0.09 -6.44 16 29 H 0.05 0.69 7.35 -51.93 -0.38 0.31 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 36 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.09 2.81 6.06 -51.93 -0.31 2.49 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.40 6.57 7.82 -40.82 -0.32 6.26 16 40 H 0.19 2.49 8.03 -52.49 -0.42 2.06 16 41 H 0.14 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.10 0.53 7.21 -51.93 -0.37 0.15 16 43 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -34.00 378.64 -10.59 -44.59 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.82 Total: 5.02 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.99 Total: 1.70 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.22 Total: -62.26 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.03 Total: 17.90 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.33 Total: -0.41 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.00 -10.59 -44.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968699459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.586 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds