Wall clock time and date at job start Tue Mar 31 2020 19:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.46670 * 2 1 4 4 C 1.53349 * 109.41565 * 240.09708 * 2 1 3 5 5 C 1.53194 * 109.14918 * 178.67647 * 4 2 1 6 6 N 1.46934 * 108.89214 * 54.57866 * 5 4 2 7 7 C 1.36935 * 120.62776 * 126.34278 * 6 5 4 8 8 H 1.08003 * 120.00334 * 331.82288 * 7 6 5 9 9 C 1.38816 * 120.00109 * 151.82327 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07479 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07501 * 9 7 6 12 12 H 1.48500 * 109.47341 * 59.99642 * 11 9 7 13 13 H 1.48504 * 109.47235 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46651 * 299.99824 * 11 9 7 15 15 C 1.46917 * 118.73910 * 306.32295 * 6 5 4 16 16 C 1.53042 * 109.45796 * 119.97381 * 2 1 3 17 17 H 1.09003 * 109.52928 * 61.41644 * 16 2 1 18 18 N 1.46496 * 109.49765 * 301.33122 * 16 2 1 19 19 C 1.34784 * 120.00104 * 155.16276 * 18 16 2 20 20 O 1.21636 * 119.99584 * 0.02562 * 19 18 16 21 21 C 1.47259 * 120.00154 * 180.02562 * 19 18 16 22 22 C 1.35206 * 123.14311 * 179.70616 * 21 19 18 23 23 S 1.70943 * 108.82930 * 179.87261 * 22 21 19 24 24 C 1.70767 * 91.12874 * 0.32997 * 23 22 21 25 25 C 1.50693 * 124.72156 * 179.84431 * 24 23 22 26 26 C 1.53000 * 117.50088 * 8.70292 * 25 24 23 27 27 C 1.53002 * 117.49832 * 300.04525 * 25 24 23 28 28 N 1.28649 * 110.55960 * 359.80880 * 24 23 22 29 29 H 1.09000 * 109.46817 * 300.02558 * 1 2 3 30 30 H 1.08991 * 109.47274 * 60.02564 * 1 2 3 31 31 H 1.08995 * 109.47589 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.68610 * 58.71674 * 4 2 1 33 33 H 1.09002 * 109.47692 * 298.51393 * 4 2 1 34 34 H 1.09003 * 109.58905 * 294.72177 * 5 4 2 35 35 H 1.09001 * 109.58865 * 174.43764 * 5 4 2 36 36 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.58812 * 173.39821 * 15 6 5 38 38 H 1.09007 * 109.58397 * 293.82038 * 15 6 5 39 39 H 0.97001 * 120.00542 * 335.17057 * 18 16 2 40 40 H 1.07998 * 125.58205 * 0.02562 * 22 21 19 41 41 H 1.09004 * 115.55622 * 154.37904 * 25 24 23 42 42 H 1.09006 * 117.49720 * 0.02562 * 26 25 24 43 43 H 1.08995 * 117.50066 * 145.02080 * 26 25 24 44 44 H 1.09000 * 117.50461 * 214.97985 * 27 25 24 45 45 H 1.08997 * 117.49501 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7210 -1.2537 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2490 -0.0001 7 6 4.9763 -2.2735 -0.0002 8 1 5.0042 -2.9704 -0.8249 9 6 5.8614 -2.4166 1.0595 10 7 6.0659 -1.4128 1.8861 11 14 6.7622 -4.0332 1.3125 12 1 7.5860 -4.3338 0.1141 13 1 7.6415 -3.9287 2.5047 14 1 5.7747 -5.1228 1.5204 15 6 3.5714 -0.6889 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6977 -1.7558 1.2388 18 7 1.5256 -0.0490 2.4459 19 6 1.4002 -0.7318 3.6012 20 8 1.7143 -1.9058 3.6509 21 6 0.8828 -0.0565 4.8032 22 6 0.7256 -0.6810 5.9921 23 16 0.1087 0.4392 7.1264 24 6 0.0870 1.6735 5.9464 25 6 -0.3739 3.0871 6.1914 26 6 -0.6621 3.4957 7.6374 27 6 -1.8178 3.2891 6.6552 28 7 0.5194 1.2287 4.8194 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5134 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6592 -0.2217 -2.1447 33 1 1.6979 -1.7560 -1.2421 34 1 3.9143 0.3410 -1.3673 35 1 3.9437 -1.2829 -2.0987 36 1 6.6846 -1.5126 2.6264 37 1 3.9417 -1.2849 2.0983 38 1 3.9143 0.3407 1.3673 39 1 1.2753 0.8874 2.4064 40 1 0.9549 -1.7171 6.1928 41 1 0.0527 3.8419 5.5307 42 1 -0.5180 2.7420 8.4116 43 1 -0.4255 4.5192 7.9279 44 1 -2.3411 4.1768 6.3000 45 1 -2.4345 2.3994 6.7827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968699459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:12 Heat of formation + Delta-G solvation = 27.481535 kcal Electronic energy + Delta-G solvation = -26852.889568 eV Core-core repulsion = 23190.380394 eV Total energy + Delta-G solvation = -3662.509174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70065 -40.36299 -39.07489 -37.93001 -36.14782 -34.72273 -32.86299 -31.72329 -30.61613 -29.05030 -27.17526 -25.94960 -25.08044 -23.37211 -23.27903 -22.64839 -21.81497 -21.27510 -20.64128 -19.47834 -18.77757 -17.79272 -17.24325 -16.98526 -16.68350 -16.46561 -15.78605 -15.47407 -15.44240 -15.29285 -15.09021 -14.82692 -14.57647 -14.44839 -14.12929 -13.63024 -13.32767 -13.29297 -13.10625 -13.04066 -12.73117 -12.61283 -12.39560 -12.37991 -12.22811 -11.94539 -11.89120 -11.68378 -11.61579 -11.46227 -11.25631 -11.11749 -10.90569 -10.61159 -10.57919 -10.20930 -9.78598 -8.72551 -7.91746 -5.38437 -0.58989 0.15720 0.50201 0.83084 1.38499 1.44934 1.49597 2.09958 2.26459 2.47180 2.72523 2.98657 3.24592 3.59309 3.73513 3.77873 3.83211 3.95319 4.03306 4.05690 4.11163 4.14147 4.40290 4.43625 4.52002 4.61541 4.70028 4.71526 4.77751 4.88572 4.94128 5.02295 5.08565 5.10382 5.13495 5.16858 5.22567 5.23195 5.38053 5.40353 5.49280 5.58509 5.72125 6.24712 6.34498 6.59841 7.07051 7.14761 7.81079 8.31523 9.13281 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.003301 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.308322 B = 8481.370013 C = 9786.484018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.076 0.924 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.266 4.266 8 H 0.071 0.929 9 C -0.052 4.052 10 N -0.932 5.932 11 Si 0.965 3.035 12 H -0.265 1.265 13 H -0.294 1.294 14 H -0.284 1.284 15 C 0.181 3.819 16 C 0.139 3.861 17 H 0.054 0.946 18 N -0.688 5.688 19 C 0.581 3.419 20 O -0.577 6.577 21 C -0.006 4.006 22 C -0.249 4.249 23 S 0.297 5.703 24 C 0.047 3.953 25 C -0.111 4.111 26 C -0.154 4.154 27 C -0.149 4.149 28 N -0.465 5.465 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.059 0.941 36 H 0.247 0.753 37 H 0.043 0.957 38 H -0.005 1.005 39 H 0.413 0.587 40 H 0.187 0.813 41 H 0.134 0.866 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.963 12.441 10.791 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.094 0.906 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.396 4.396 8 H 0.088 0.912 9 C -0.248 4.248 10 N -0.578 5.578 11 Si 0.793 3.207 12 H -0.190 1.190 13 H -0.220 1.220 14 H -0.211 1.211 15 C 0.054 3.946 16 C 0.033 3.967 17 H 0.072 0.928 18 N -0.338 5.338 19 C 0.366 3.634 20 O -0.457 6.457 21 C -0.141 4.141 22 C -0.392 4.392 23 S 0.556 5.444 24 C -0.231 4.231 25 C -0.133 4.133 26 C -0.192 4.192 27 C -0.188 4.188 28 N -0.181 5.181 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.013 0.987 39 H 0.250 0.750 40 H 0.204 0.796 41 H 0.152 0.848 42 H 0.122 0.878 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.835 11.903 11.461 25.815 hybrid contribution 1.548 -1.236 -0.677 2.093 sum -18.287 10.667 10.784 23.758 Atomic orbital electron populations 1.21752 0.93058 1.01690 1.02605 1.21322 0.96913 0.99274 0.92923 0.90591 1.22022 0.95704 1.00301 0.97283 1.21193 0.93579 0.96215 0.87992 1.44223 1.48175 1.39901 1.00884 1.19491 1.09420 1.03903 1.06822 0.91183 1.25858 0.98625 1.00434 0.99846 1.70185 1.38201 1.30941 1.18452 0.85375 0.78004 0.79932 0.77424 1.19025 1.21990 1.21070 1.20740 0.89512 0.94824 0.89507 1.21616 0.95061 0.95916 0.84156 0.92824 1.45731 1.63821 1.14972 1.09247 1.17578 0.77384 0.85494 0.82989 1.90812 1.52285 1.17577 1.85067 1.20176 1.08059 0.90503 0.95331 1.26891 1.06476 1.08166 0.97651 1.82176 1.54159 0.96836 1.11251 1.26818 1.02183 1.02027 0.92088 1.20557 1.02409 0.88491 1.01798 1.23328 1.01312 1.04772 0.89833 1.23298 0.89150 1.04927 1.01392 1.66779 1.13876 1.10692 1.26712 0.92674 0.89996 0.93616 0.88235 0.92884 0.96145 0.92271 0.94433 0.93858 0.98660 0.75003 0.79564 0.84816 0.87811 0.85243 0.85697 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.02 71.98 0.65 -2.83 16 2 C -0.09 -2.82 2.27 -10.66 -0.02 -2.84 16 3 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 4 C -0.11 -3.79 5.39 30.78 0.17 -3.63 16 5 C 0.14 5.73 6.50 86.36 0.56 6.29 16 6 N -0.61 -32.88 2.99 -699.07 -2.09 -34.97 16 7 C -0.27 -15.77 9.58 84.03 0.81 -14.96 16 8 H 0.07 3.98 7.89 -2.91 -0.02 3.96 16 9 C -0.05 -3.17 4.92 84.86 0.42 -2.75 16 10 N -0.93 -59.98 11.20 21.65 0.24 -59.74 16 11 Si 0.96 48.82 29.59 68.60 2.03 50.85 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 13 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 14 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 15 C 0.18 9.77 4.88 86.37 0.42 10.19 16 16 C 0.14 5.96 2.07 45.07 0.09 6.05 16 17 H 0.05 2.63 7.58 -2.39 -0.02 2.61 16 18 N -0.69 -26.72 4.37 -445.56 -1.95 -28.66 16 19 C 0.58 24.44 7.76 86.61 0.67 25.12 16 20 O -0.58 -29.25 16.38 -4.14 -0.07 -29.32 16 21 C -0.01 -0.19 6.70 40.55 0.27 0.08 16 22 C -0.25 -6.96 10.62 67.12 0.71 -6.24 16 23 S 0.30 5.22 21.65 -56.49 -1.22 4.00 16 24 C 0.05 1.01 6.99 88.57 0.62 1.63 16 25 C -0.11 -1.55 6.33 -11.54 -0.07 -1.63 16 26 C -0.15 -1.19 10.01 30.62 0.31 -0.88 16 27 C -0.15 -1.26 10.24 30.62 0.31 -0.94 16 28 N -0.47 -13.50 10.12 -180.85 -1.83 -15.33 16 29 H 0.05 1.39 7.35 -2.39 -0.02 1.37 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 36 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.04 2.77 6.06 -2.39 -0.01 2.75 16 38 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 39 H 0.41 13.90 7.82 -92.71 -0.73 13.18 16 40 H 0.19 5.15 8.03 -2.91 -0.02 5.13 16 41 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.10 0.69 7.21 -2.38 -0.02 0.68 16 43 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -80.50 378.64 1.30 -79.19 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.28 Total: 21.32 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 5.91 Total: 12.66 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -5.63 Total: -138.70 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.07 Total: -29.32 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.85 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.22 Total: 4.00 kcal Total: -80.50 1.30 -79.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968699459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.675 kcal (2) G-P(sol) polarization free energy of solvation -80.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds