Wall clock time and date at job start Tue Mar 31 2020 19:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.87235 * 2 1 4 4 C 1.54327 * 110.00881 * 121.09878 * 2 1 3 5 5 H 1.08991 * 110.72036 * 23.32362 * 4 2 1 6 6 N 1.46499 * 110.71665 * 260.22011 * 4 2 1 7 7 C 1.36942 * 119.99415 * 155.00221 * 6 4 2 8 8 H 1.08002 * 120.00066 * 359.97438 * 7 6 4 9 9 C 1.38810 * 119.99698 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00451 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99710 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46868 * 60.00100 * 11 9 7 13 13 H 1.48497 * 109.46927 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47036 * 299.99944 * 11 9 7 15 15 C 1.55158 * 102.93952 * 141.68472 * 4 2 1 16 16 C 1.55128 * 101.48515 * 324.33227 * 15 4 2 17 17 N 1.47022 * 109.88065 * 238.98665 * 2 1 3 18 18 C 1.34768 * 125.64967 * 61.45178 * 17 2 1 19 19 O 1.21687 * 120.00505 * 5.58795 * 18 17 2 20 20 C 1.46692 * 120.00013 * 185.58419 * 18 17 2 21 21 C 1.35660 * 126.13085 * 186.17641 * 20 18 17 22 22 N 1.30941 * 114.18815 * 180.02562 * 21 20 18 23 23 C 1.29424 * 117.36604 * 359.97438 * 22 21 20 24 24 C 1.50702 * 124.80209 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.47125 * 89.95061 * 24 23 22 26 26 C 1.53003 * 117.49452 * 243.61972 * 25 24 23 27 27 C 1.53001 * 117.49777 * 174.99882 * 25 24 23 28 28 S 1.70952 * 110.39230 * 0.02562 * 23 22 21 29 29 H 1.08994 * 109.47073 * 179.55735 * 1 2 3 30 30 H 1.09003 * 109.47071 * 299.56296 * 1 2 3 31 31 H 1.09005 * 109.46891 * 59.55970 * 1 2 3 32 32 H 0.96994 * 120.00617 * 335.00941 * 6 4 2 33 33 H 0.97000 * 120.00401 * 180.02562 * 10 9 7 34 34 H 1.09006 * 111.00315 * 82.57159 * 15 4 2 35 35 H 1.08994 * 111.00316 * 206.42101 * 15 4 2 36 36 H 1.08999 * 110.49515 * 278.45633 * 16 15 4 37 37 H 1.09003 * 110.34517 * 156.06325 * 16 15 4 38 38 H 1.08002 * 122.90449 * 359.74976 * 21 20 18 39 39 H 1.09006 * 109.46990 * 209.94438 * 24 23 22 40 40 H 1.09000 * 109.47402 * 329.94447 * 24 23 22 41 41 H 1.09003 * 115.55342 * 29.32672 * 25 24 23 42 42 H 1.08996 * 117.50162 * 359.97438 * 26 25 24 43 43 H 1.09000 * 117.49691 * 145.02564 * 26 25 24 44 44 H 1.09005 * 117.50128 * 214.97277 * 27 25 24 45 45 H 1.08993 * 117.50150 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 1.2417 5 1 1.3104 -1.4472 1.6178 6 7 2.4541 0.1969 2.2880 7 6 2.4584 -0.1957 3.5999 8 1 2.1695 -1.2025 3.8632 9 6 2.8331 0.7006 4.5913 10 7 3.1848 1.9277 4.2705 11 14 2.8383 0.1652 6.3810 12 1 3.7753 -0.9737 6.5542 13 1 3.2744 1.2988 7.2355 14 1 1.4699 -0.2551 6.7759 15 6 3.2918 -1.5107 0.6894 16 6 2.8131 -1.8793 -0.7394 17 7 2.0300 -0.7124 -1.1850 18 6 1.8049 -0.3602 -2.4662 19 8 1.2236 0.6786 -2.7186 20 6 2.2609 -1.2291 -3.5566 21 6 2.2071 -0.9445 -4.8819 22 7 2.6796 -1.8911 -5.6535 23 6 3.1310 -2.9584 -5.0773 24 6 3.7109 -4.1466 -5.8006 25 6 5.2189 -3.9530 -5.9720 26 6 5.7589 -3.8405 -7.3992 27 6 6.0146 -5.1087 -6.5822 28 16 2.9763 -2.8297 -3.3797 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3633 0.5070 0.8939 31 1 -0.3633 0.5207 -0.8861 32 1 2.7132 1.1012 2.0515 33 1 3.4470 2.5539 4.9633 34 1 4.1682 -0.8633 0.6566 35 1 3.4921 -2.4073 1.2759 36 1 2.1852 -2.7700 -0.7136 37 1 3.6682 -2.0358 -1.3970 38 1 1.8050 -0.0193 -5.2675 39 1 3.5243 -5.0510 -5.2215 40 1 3.2427 -4.2395 -6.7805 41 1 5.7073 -3.3579 -5.2004 42 1 5.0399 -3.9048 -8.2159 43 1 6.6027 -3.1712 -7.5667 44 1 7.0266 -5.2736 -6.2124 45 1 5.4638 -6.0069 -6.8611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986604041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:39 Heat of formation + Delta-G solvation = 49.014150 kcal Electronic energy + Delta-G solvation = -26045.242300 eV Core-core repulsion = 22383.666850 eV Total energy + Delta-G solvation = -3661.575450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.37017 -39.67318 -37.89693 -37.32609 -34.23052 -32.40603 -31.56546 -30.99913 -29.56289 -28.44193 -25.34767 -24.91820 -23.34603 -22.89829 -22.76092 -21.30928 -21.08542 -19.90576 -18.89483 -18.29168 -17.31721 -16.57946 -16.37227 -16.01764 -15.44304 -15.27815 -14.76029 -14.70685 -14.18682 -13.79556 -13.69871 -13.62796 -13.50781 -13.21871 -12.91258 -12.72580 -12.24352 -12.10440 -11.98662 -11.91432 -11.89175 -11.57602 -11.24266 -11.09861 -10.88912 -10.83273 -10.67626 -10.42076 -10.35177 -10.14839 -10.02676 -9.85684 -9.68351 -9.56730 -9.14645 -8.97800 -8.50423 -7.09665 -5.86015 -3.17199 0.08130 0.98916 1.41695 2.32966 2.96222 3.17497 3.35500 3.38510 3.43341 3.44539 3.73307 4.32327 4.45516 4.47934 4.50581 4.55968 4.72894 4.85845 5.01734 5.11224 5.18516 5.21390 5.22045 5.25160 5.27771 5.37634 5.45340 5.51473 5.59599 5.70039 5.71986 5.78484 5.83850 5.91877 5.99954 6.05120 6.19813 6.36702 6.48519 6.53822 6.62556 6.82737 7.41615 7.57651 7.60699 8.13270 8.30824 9.42439 9.95763 10.30550 11.35844 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.002493 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.695475 B =11228.450056 C =12170.926980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.081 0.919 4 C 0.178 3.822 5 H 0.070 0.930 6 N -0.713 5.713 7 C -0.247 4.247 8 H 0.072 0.928 9 C -0.008 4.008 10 N -0.929 5.929 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.151 4.151 16 C 0.086 3.914 17 N -0.603 5.603 18 C 0.606 3.394 19 O -0.528 6.528 20 C -0.284 4.284 21 C 0.114 3.886 22 N -0.476 5.476 23 C 0.039 3.961 24 C -0.015 4.015 25 C -0.152 4.152 26 C -0.173 4.173 27 C -0.176 4.176 28 S 0.189 5.811 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.386 0.614 33 H 0.258 0.742 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.187 0.813 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.336 -15.249 -20.661 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.099 0.901 4 C 0.066 3.934 5 H 0.088 0.912 6 N -0.352 5.352 7 C -0.378 4.378 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.576 5.576 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.211 1.211 15 C -0.192 4.192 16 C -0.038 4.038 17 N -0.336 5.336 18 C 0.393 3.607 19 O -0.407 6.407 20 C -0.408 4.408 21 C -0.043 4.043 22 N -0.190 5.190 23 C -0.235 4.235 24 C -0.055 4.055 25 C -0.171 4.171 26 C -0.210 4.210 27 C -0.213 4.213 28 S 0.447 5.553 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.221 0.779 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.203 0.797 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.266 -15.385 -20.391 25.644 hybrid contribution -0.096 0.879 0.526 1.029 sum 2.170 -14.505 -19.866 24.693 Atomic orbital electron populations 1.22045 0.94628 1.01699 1.02876 1.22035 0.94565 0.97166 0.83852 0.90051 1.21235 0.93478 0.91639 0.87094 0.91235 1.42340 1.79441 1.11600 1.01868 1.19158 1.38978 0.96820 0.82834 0.90977 1.24778 1.01767 0.95820 0.98160 1.69651 1.50941 1.04480 1.32534 0.86249 0.77776 0.77263 0.84744 1.21169 1.21662 1.21141 1.23620 1.01623 1.01979 0.91990 1.22628 0.94775 0.88565 0.97838 1.48407 1.51740 1.28690 1.04780 1.16322 0.79576 0.84471 0.80369 1.90831 1.42959 1.23886 1.82991 1.25823 1.15262 1.00493 0.99232 1.22143 0.96130 0.98781 0.87267 1.66240 1.13190 1.00749 1.38814 1.27595 1.00748 0.98580 0.96585 1.19876 0.93059 0.91744 1.00847 1.22186 0.93365 1.03611 0.97973 1.23051 1.03475 1.00438 0.94019 1.23017 1.01308 0.92809 1.04137 1.84281 1.53921 1.11793 1.05300 0.93001 0.90754 0.92106 0.77902 0.93246 0.90369 0.90149 0.90985 0.91034 0.79655 0.88974 0.88547 0.87534 0.88440 0.88711 0.88475 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.11 37.16 0.34 -2.20 16 2 C 0.13 2.22 3.18 -66.95 -0.21 2.01 16 3 H 0.08 1.60 7.72 -51.93 -0.40 1.20 16 4 C 0.18 3.28 3.13 -66.09 -0.21 3.07 16 5 H 0.07 1.27 7.80 -51.93 -0.41 0.87 16 6 N -0.71 -16.82 5.23 -51.65 -0.27 -17.10 16 7 C -0.25 -6.46 9.96 -15.06 -0.15 -6.61 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 10 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 11 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C -0.15 -2.36 6.79 -24.46 -0.17 -2.52 16 16 C 0.09 1.13 5.32 -2.41 -0.01 1.11 16 17 N -0.60 -9.42 3.06 -164.40 -0.50 -9.93 16 18 C 0.61 9.86 7.56 -12.85 -0.10 9.76 16 19 O -0.53 -10.13 16.12 5.20 0.08 -10.04 16 20 C -0.28 -3.81 6.35 -37.09 -0.24 -4.05 16 21 C 0.11 1.47 11.10 -18.85 -0.21 1.27 16 22 N -0.48 -5.79 10.51 -11.50 -0.12 -5.91 16 23 C 0.04 0.39 6.59 -13.29 -0.09 0.30 16 24 C -0.01 -0.10 6.07 -27.88 -0.17 -0.27 16 25 C -0.15 -1.04 5.72 -90.62 -0.52 -1.56 16 26 C -0.17 -1.10 10.18 -26.73 -0.27 -1.37 16 27 C -0.18 -0.95 10.25 -26.73 -0.27 -1.22 16 28 S 0.19 1.89 18.88 -107.50 -2.03 -0.14 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.03 7.06 -51.93 -0.37 0.67 16 32 H 0.39 9.91 7.56 -40.82 -0.31 9.61 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 0.81 7.98 -51.93 -0.41 0.40 16 37 H 0.07 0.84 5.77 -40.32 -0.23 0.60 16 38 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.64 7.88 -51.93 -0.41 0.23 16 41 H 0.11 0.81 8.07 -51.93 -0.42 0.39 16 42 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -31.03 381.76 -10.48 -41.51 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.72 Total: 8.41 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.37 Total: -2.61 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.17 Total: -59.41 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.03 Total: -0.14 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.03 -10.48 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986604041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.523 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds