Wall clock time and date at job start Tue Mar 31 2020 19:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.87235 * 2 1 4 4 C 1.54327 * 110.00881 * 121.09878 * 2 1 3 5 5 H 1.08991 * 110.72036 * 23.32362 * 4 2 1 6 6 N 1.46499 * 110.71665 * 260.22011 * 4 2 1 7 7 C 1.36942 * 119.99415 * 155.00221 * 6 4 2 8 8 H 1.08002 * 120.00066 * 359.97438 * 7 6 4 9 9 C 1.38810 * 119.99698 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00451 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99710 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46868 * 60.00100 * 11 9 7 13 13 H 1.48497 * 109.46927 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47036 * 299.99944 * 11 9 7 15 15 C 1.55158 * 102.93952 * 141.68472 * 4 2 1 16 16 C 1.55128 * 101.48515 * 324.33227 * 15 4 2 17 17 N 1.47022 * 109.88065 * 238.98665 * 2 1 3 18 18 C 1.34768 * 125.64967 * 61.45178 * 17 2 1 19 19 O 1.21687 * 120.00505 * 5.58795 * 18 17 2 20 20 C 1.46692 * 120.00013 * 185.58419 * 18 17 2 21 21 C 1.35660 * 126.13085 * 186.17641 * 20 18 17 22 22 N 1.30941 * 114.18815 * 180.02562 * 21 20 18 23 23 C 1.29424 * 117.36604 * 359.97438 * 22 21 20 24 24 C 1.50702 * 124.80209 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.47125 * 89.95061 * 24 23 22 26 26 C 1.53003 * 117.49452 * 243.61972 * 25 24 23 27 27 C 1.53001 * 117.49777 * 174.99882 * 25 24 23 28 28 S 1.70952 * 110.39230 * 0.02562 * 23 22 21 29 29 H 1.08994 * 109.47073 * 179.55735 * 1 2 3 30 30 H 1.09003 * 109.47071 * 299.56296 * 1 2 3 31 31 H 1.09005 * 109.46891 * 59.55970 * 1 2 3 32 32 H 0.96994 * 120.00617 * 335.00941 * 6 4 2 33 33 H 0.97000 * 120.00401 * 180.02562 * 10 9 7 34 34 H 1.09006 * 111.00315 * 82.57159 * 15 4 2 35 35 H 1.08994 * 111.00316 * 206.42101 * 15 4 2 36 36 H 1.08999 * 110.49515 * 278.45633 * 16 15 4 37 37 H 1.09003 * 110.34517 * 156.06325 * 16 15 4 38 38 H 1.08002 * 122.90449 * 359.74976 * 21 20 18 39 39 H 1.09006 * 109.46990 * 209.94438 * 24 23 22 40 40 H 1.09000 * 109.47402 * 329.94447 * 24 23 22 41 41 H 1.09003 * 115.55342 * 29.32672 * 25 24 23 42 42 H 1.08996 * 117.50162 * 359.97438 * 26 25 24 43 43 H 1.09000 * 117.49691 * 145.02564 * 26 25 24 44 44 H 1.09005 * 117.50128 * 214.97277 * 27 25 24 45 45 H 1.08993 * 117.50150 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 1.2417 5 1 1.3104 -1.4472 1.6178 6 7 2.4541 0.1969 2.2880 7 6 2.4584 -0.1957 3.5999 8 1 2.1695 -1.2025 3.8632 9 6 2.8331 0.7006 4.5913 10 7 3.1848 1.9277 4.2705 11 14 2.8383 0.1652 6.3810 12 1 3.7753 -0.9737 6.5542 13 1 3.2744 1.2988 7.2355 14 1 1.4699 -0.2551 6.7759 15 6 3.2918 -1.5107 0.6894 16 6 2.8131 -1.8793 -0.7394 17 7 2.0300 -0.7124 -1.1850 18 6 1.8049 -0.3602 -2.4662 19 8 1.2236 0.6786 -2.7186 20 6 2.2609 -1.2291 -3.5566 21 6 2.2071 -0.9445 -4.8819 22 7 2.6796 -1.8911 -5.6535 23 6 3.1310 -2.9584 -5.0773 24 6 3.7109 -4.1466 -5.8006 25 6 5.2189 -3.9530 -5.9720 26 6 5.7589 -3.8405 -7.3992 27 6 6.0146 -5.1087 -6.5822 28 16 2.9763 -2.8297 -3.3797 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3633 0.5070 0.8939 31 1 -0.3633 0.5207 -0.8861 32 1 2.7132 1.1012 2.0515 33 1 3.4470 2.5539 4.9633 34 1 4.1682 -0.8633 0.6566 35 1 3.4921 -2.4073 1.2759 36 1 2.1852 -2.7700 -0.7136 37 1 3.6682 -2.0358 -1.3970 38 1 1.8050 -0.0193 -5.2675 39 1 3.5243 -5.0510 -5.2215 40 1 3.2427 -4.2395 -6.7805 41 1 5.7073 -3.3579 -5.2004 42 1 5.0399 -3.9048 -8.2159 43 1 6.6027 -3.1712 -7.5667 44 1 7.0266 -5.2736 -6.2124 45 1 5.4638 -6.0069 -6.8611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986604041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:38 Heat of formation + Delta-G solvation = 30.333867 kcal Electronic energy + Delta-G solvation = -26046.052338 eV Core-core repulsion = 22383.666850 eV Total energy + Delta-G solvation = -3662.385488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53071 -40.71603 -38.83347 -38.27796 -35.97707 -33.69964 -32.86757 -32.26112 -31.04225 -29.47520 -26.93686 -25.83828 -24.97719 -24.12736 -23.18499 -22.45346 -21.72724 -21.29468 -19.83132 -19.49419 -19.07255 -17.74746 -17.58072 -16.96115 -16.57411 -16.29127 -16.04813 -15.66903 -15.46805 -15.37036 -14.89443 -14.71365 -14.50891 -14.37400 -14.19504 -13.68945 -13.57560 -13.45932 -13.23944 -12.95740 -12.73178 -12.65546 -12.52752 -12.48546 -12.30796 -12.22805 -12.15536 -11.74288 -11.63950 -11.39243 -11.23236 -10.91773 -10.87858 -10.65122 -10.49872 -10.10183 -9.69418 -9.03762 -7.93064 -5.23591 -0.84708 0.10942 0.52455 1.32503 1.50732 1.53427 1.59201 1.72329 2.03589 2.58224 2.86977 3.00324 3.31333 3.42830 3.61772 3.76566 3.80952 3.87813 3.94117 4.03718 4.10953 4.16688 4.19806 4.25394 4.33042 4.43887 4.51520 4.56502 4.61838 4.66706 4.75394 4.83176 4.86229 4.99170 5.00803 5.09453 5.16785 5.18496 5.24264 5.28685 5.31921 5.39818 5.55334 6.26022 6.30992 6.56702 6.87651 7.33315 8.04283 8.28216 9.30119 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.002493 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.695475 B =11228.450056 C =12170.926980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.132 3.868 3 H 0.048 0.952 4 C 0.173 3.827 5 H 0.080 0.920 6 N -0.727 5.727 7 C -0.237 4.237 8 H 0.086 0.914 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.274 1.274 13 H -0.302 1.302 14 H -0.277 1.277 15 C -0.142 4.142 16 C 0.092 3.908 17 N -0.604 5.604 18 C 0.604 3.396 19 O -0.569 6.569 20 C -0.319 4.319 21 C 0.118 3.882 22 N -0.498 5.498 23 C 0.049 3.951 24 C -0.015 4.015 25 C -0.162 4.162 26 C -0.185 4.185 27 C -0.160 4.160 28 S 0.246 5.754 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.371 0.629 33 H 0.250 0.750 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.182 0.818 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 -19.255 -21.427 28.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.067 0.933 4 C 0.063 3.937 5 H 0.098 0.902 6 N -0.366 5.366 7 C -0.368 4.368 8 H 0.104 0.896 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.200 1.200 13 H -0.229 1.229 14 H -0.203 1.203 15 C -0.183 4.183 16 C -0.032 4.032 17 N -0.337 5.337 18 C 0.393 3.607 19 O -0.451 6.451 20 C -0.443 4.443 21 C -0.041 4.041 22 N -0.213 5.213 23 C -0.224 4.224 24 C -0.056 4.056 25 C -0.182 4.182 26 C -0.222 4.222 27 C -0.196 4.196 28 S 0.505 5.495 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.203 0.797 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.199 0.801 39 H 0.137 0.863 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.662 -19.484 -21.178 28.900 hybrid contribution -0.189 2.032 0.602 2.128 sum 2.473 -17.451 -20.576 27.093 Atomic orbital electron populations 1.21941 0.93815 1.02672 1.01850 1.21763 0.95142 0.95673 0.84599 0.93340 1.21427 0.94954 0.91073 0.86220 0.90225 1.42511 1.79829 1.11856 1.02423 1.19600 1.36413 0.97004 0.83817 0.89594 1.25589 1.02948 0.96044 1.02215 1.69827 1.53413 1.05754 1.33191 0.85211 0.78055 0.76562 0.79908 1.20013 1.22901 1.20322 1.23428 0.99230 1.01817 0.93795 1.22768 0.95663 0.88430 0.96290 1.48406 1.51893 1.29193 1.04183 1.16678 0.78864 0.84288 0.80859 1.90799 1.44851 1.25809 1.83634 1.25559 1.17767 1.02663 0.98323 1.22203 0.95533 0.98997 0.87385 1.66320 1.14547 1.01395 1.39001 1.28210 0.98664 0.98535 0.97021 1.20092 0.92897 0.91216 1.01345 1.22157 0.93281 1.04860 0.97934 1.23122 1.03587 1.01442 0.93999 1.23100 1.01445 0.92654 1.02449 1.83884 1.52356 1.08519 1.04749 0.90922 0.91777 0.93102 0.79698 0.94143 0.92307 0.88197 0.87887 0.89175 0.80077 0.86320 0.87899 0.88456 0.88195 0.89119 0.87934 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.11 71.98 0.66 -4.11 16 2 C 0.13 4.68 3.18 45.34 0.14 4.82 16 3 H 0.05 2.03 7.72 -2.39 -0.02 2.01 16 4 C 0.17 6.26 3.13 46.18 0.14 6.41 16 5 H 0.08 2.74 7.80 -2.39 -0.02 2.72 16 6 N -0.73 -34.76 5.23 -317.33 -1.66 -36.42 16 7 C -0.24 -12.30 9.96 84.03 0.84 -11.47 16 8 H 0.09 4.15 7.83 -2.91 -0.02 4.12 16 9 C -0.08 -4.19 5.50 84.86 0.47 -3.73 16 10 N -0.97 -58.59 13.06 21.65 0.28 -58.31 16 11 Si 0.97 44.47 29.55 68.60 2.03 46.50 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 13 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 14 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 15 C -0.14 -4.17 6.79 32.06 0.22 -3.95 16 16 C 0.09 2.14 5.32 86.93 0.46 2.60 16 17 N -0.60 -18.43 3.06 -792.26 -2.43 -20.86 16 18 C 0.60 19.66 7.56 86.45 0.65 20.31 16 19 O -0.57 -22.65 16.12 -4.31 -0.07 -22.72 16 20 C -0.32 -8.24 6.35 23.88 0.15 -8.09 16 21 C 0.12 2.99 11.10 84.23 0.93 3.92 16 22 N -0.50 -11.39 10.51 -190.30 -2.00 -13.39 16 23 C 0.05 0.85 6.59 88.46 0.58 1.43 16 24 C -0.02 -0.16 6.07 29.85 0.18 0.02 16 25 C -0.16 -1.79 5.72 -10.79 -0.06 -1.85 16 26 C -0.18 -1.98 10.18 30.60 0.31 -1.67 16 27 C -0.16 -1.23 10.25 30.60 0.31 -0.91 16 28 S 0.25 4.16 18.88 -56.49 -1.07 3.09 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.05 1.77 7.06 -2.38 -0.02 1.75 16 32 H 0.37 19.83 7.56 -92.71 -0.70 19.13 16 33 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.10 1.86 7.98 -2.39 -0.02 1.84 16 37 H 0.09 1.81 5.77 -9.77 -0.06 1.75 16 38 H 0.18 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.10 1.03 7.88 -2.39 -0.02 1.01 16 41 H 0.10 1.27 8.07 -2.39 -0.02 1.25 16 42 H 0.10 1.01 8.03 -2.39 -0.02 0.99 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -69.21 381.76 1.34 -67.87 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.26 Total: 30.50 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 6.00 Total: 3.74 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -5.80 Total: -128.98 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.07 Total: -22.72 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.07 Total: 3.09 kcal Total: -69.21 1.34 -67.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986604041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.202 kcal (2) G-P(sol) polarization free energy of solvation -69.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds