Wall clock time and date at job start Tue Mar 31 2020 19:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.87481 * 2 1 4 4 C 1.54322 * 109.88277 * 121.17539 * 2 1 3 5 5 H 1.09005 * 110.72078 * 215.59008 * 4 2 1 6 6 N 1.46498 * 110.72149 * 338.85873 * 4 2 1 7 7 C 1.36932 * 120.00633 * 205.00187 * 6 4 2 8 8 H 1.08008 * 119.99603 * 0.02562 * 7 6 4 9 9 C 1.38808 * 120.00417 * 180.02562 * 7 6 4 10 10 N 1.31620 * 120.00275 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 120.00211 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46961 * 89.99506 * 11 9 7 13 13 H 1.48497 * 109.47068 * 209.99917 * 11 9 7 14 14 H 1.48504 * 109.46751 * 330.00058 * 11 9 7 15 15 C 1.55150 * 102.94317 * 97.22491 * 4 2 1 16 16 C 1.54909 * 101.58447 * 35.50418 * 15 4 2 17 17 N 1.47024 * 109.88536 * 238.98281 * 2 1 3 18 18 C 1.34780 * 125.64556 * 59.55912 * 17 2 1 19 19 O 1.21681 * 119.99887 * 354.49439 * 18 17 2 20 20 C 1.46678 * 119.99640 * 174.50050 * 18 17 2 21 21 C 1.35664 * 126.12735 * 173.82093 * 20 18 17 22 22 N 1.30948 * 114.19029 * 179.97438 * 21 20 18 23 23 C 1.29426 * 117.36191 * 359.97438 * 22 21 20 24 24 C 1.50704 * 124.80072 * 180.02562 * 23 22 21 25 25 C 1.52993 * 109.47428 * 89.97805 * 24 23 22 26 26 C 1.52999 * 117.49868 * 243.62254 * 25 24 23 27 27 C 1.53001 * 117.50336 * 174.99548 * 25 24 23 28 28 S 1.70955 * 110.39382 * 359.72800 * 23 22 21 29 29 H 1.08998 * 109.47382 * 179.56190 * 1 2 3 30 30 H 1.09005 * 109.47451 * 299.56276 * 1 2 3 31 31 H 1.09003 * 109.47160 * 59.56052 * 1 2 3 32 32 H 0.97009 * 119.99589 * 24.99989 * 6 4 2 33 33 H 0.96997 * 120.00086 * 180.02562 * 10 9 7 34 34 H 1.08997 * 111.00720 * 277.42272 * 15 4 2 35 35 H 1.09002 * 111.03810 * 153.59163 * 15 4 2 36 36 H 1.08999 * 110.36717 * 204.15651 * 16 15 4 37 37 H 1.09003 * 110.36617 * 81.82849 * 16 15 4 38 38 H 1.08001 * 122.90851 * 0.03496 * 21 20 18 39 39 H 1.09007 * 109.46801 * 209.97352 * 24 23 22 40 40 H 1.09000 * 109.47362 * 329.97303 * 24 23 22 41 41 H 1.09005 * 115.55114 * 29.32587 * 25 24 23 42 42 H 1.08998 * 117.50148 * 359.97438 * 26 25 24 43 43 H 1.09004 * 117.49793 * 145.02018 * 26 25 24 44 44 H 1.08999 * 117.50516 * 214.97590 * 27 25 24 45 45 H 1.08999 * 117.49322 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 1.2417 5 1 2.9656 -0.2854 1.6179 6 7 1.0293 -0.8057 2.2864 7 6 1.3952 -0.9437 3.5987 8 1 2.4401 -1.0119 3.8636 9 6 0.4235 -0.9958 4.5885 10 7 -0.8498 -0.9122 4.2658 11 14 0.9228 -1.1847 6.3787 12 1 1.1135 0.1579 6.9836 13 1 -0.1414 -1.9130 7.1152 14 1 2.1933 -1.9493 6.4601 15 6 2.3518 -2.1704 0.6894 16 6 2.8568 -1.8488 -0.7393 17 7 2.0300 -0.7124 -1.1849 18 6 1.7754 -0.3810 -2.4662 19 8 0.9972 0.5198 -2.7185 20 6 2.4361 -1.1064 -3.5565 21 6 2.1865 -0.9591 -4.8818 22 7 2.9148 -1.7265 -5.6535 23 6 3.7649 -2.5142 -5.0774 24 6 4.6845 -3.4640 -5.8007 25 6 6.0015 -2.7544 -6.1210 26 6 6.3591 -2.5605 -7.5959 27 6 7.1178 -3.5880 -6.7534 28 16 3.7029 -2.3186 -3.3802 29 1 -0.3634 -1.0276 -0.0079 30 1 -0.3634 0.5070 0.8939 31 1 -0.3633 0.5207 -0.8860 32 1 0.0908 -0.7441 2.0485 33 1 -1.5288 -0.9483 4.9576 34 1 1.4452 -2.7746 0.6566 35 1 3.1267 -2.6642 1.2757 36 1 2.7087 -2.7061 -1.3960 37 1 3.9092 -1.5657 -0.7149 38 1 1.4515 -0.2680 -5.2672 39 1 4.8827 -4.3298 -5.1688 40 1 4.2132 -3.7910 -6.7276 41 1 6.2934 -1.9683 -5.4245 42 1 5.6563 -2.9390 -8.3381 43 1 6.8863 -1.6467 -7.8701 44 1 8.1440 -3.3502 -6.4735 45 1 6.9136 -4.6420 -6.9417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986604042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:41 Heat of formation + Delta-G solvation = 37.583512 kcal Electronic energy + Delta-G solvation = -26112.034991 eV Core-core repulsion = 22449.963872 eV Total energy + Delta-G solvation = -3662.071120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55789 -40.73663 -38.88852 -38.27935 -36.00062 -33.73751 -32.82135 -32.15245 -30.94629 -29.42231 -26.88663 -25.96662 -25.28991 -24.10641 -23.18309 -22.57494 -21.72194 -20.64166 -19.84156 -19.55146 -19.29590 -17.71823 -17.24861 -17.21264 -16.52154 -16.37730 -15.96983 -15.89862 -15.59539 -15.38956 -14.83385 -14.68628 -14.47474 -14.37219 -14.02489 -13.75800 -13.56115 -13.37548 -13.18109 -12.95041 -12.89144 -12.71565 -12.55329 -12.46551 -12.30652 -12.11619 -12.05546 -11.65386 -11.60824 -11.35193 -11.17810 -10.94116 -10.87461 -10.64042 -10.48340 -10.09366 -9.69331 -9.01828 -7.92621 -5.22040 -0.84086 0.11514 0.53115 1.33096 1.50957 1.52237 1.60305 1.73403 2.04698 2.58649 2.87232 3.00657 3.31323 3.44085 3.63926 3.79665 3.84600 3.87793 3.91138 4.03857 4.10422 4.16238 4.19797 4.27564 4.31815 4.48525 4.52134 4.59285 4.64225 4.66861 4.75603 4.80488 4.86451 4.99897 5.01281 5.09599 5.17080 5.21155 5.24480 5.28880 5.32089 5.44957 5.56159 6.28172 6.31779 6.57208 6.88983 7.36076 8.08525 8.32191 9.30865 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.002420 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.401011 B =11569.393981 C =12469.991706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.135 3.865 3 H 0.072 0.928 4 C 0.168 3.832 5 H 0.077 0.923 6 N -0.730 5.730 7 C -0.237 4.237 8 H 0.085 0.915 9 C -0.076 4.076 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.291 1.291 13 H -0.301 1.301 14 H -0.264 1.264 15 C -0.139 4.139 16 C 0.091 3.909 17 N -0.604 5.604 18 C 0.604 3.396 19 O -0.567 6.567 20 C -0.319 4.319 21 C 0.118 3.882 22 N -0.498 5.498 23 C 0.049 3.951 24 C -0.016 4.016 25 C -0.161 4.161 26 C -0.184 4.184 27 C -0.160 4.160 28 S 0.245 5.755 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.380 0.620 33 H 0.250 0.750 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.183 0.817 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.568 -8.256 -21.709 29.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.031 3.969 3 H 0.090 0.910 4 C 0.058 3.942 5 H 0.095 0.905 6 N -0.372 5.372 7 C -0.369 4.369 8 H 0.102 0.898 9 C -0.269 4.269 10 N -0.621 5.621 11 Si 0.802 3.198 12 H -0.218 1.218 13 H -0.228 1.228 14 H -0.189 1.189 15 C -0.180 4.180 16 C -0.032 4.032 17 N -0.337 5.337 18 C 0.393 3.607 19 O -0.448 6.448 20 C -0.443 4.443 21 C -0.041 4.041 22 N -0.213 5.213 23 C -0.224 4.224 24 C -0.056 4.056 25 C -0.181 4.181 26 C -0.221 4.221 27 C -0.197 4.197 28 S 0.504 5.496 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.216 0.784 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.200 0.800 39 H 0.136 0.864 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.122 0.878 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.793 -8.289 -21.464 29.086 hybrid contribution -1.605 1.028 0.652 2.014 sum 16.188 -7.261 -20.812 27.348 Atomic orbital electron populations 1.21854 0.95584 1.01448 1.01588 1.21728 0.94556 0.95928 0.84712 0.90972 1.21387 0.92367 0.93920 0.86566 0.90476 1.42829 1.05021 1.87172 1.02197 1.19670 0.92968 1.40131 0.84109 0.89762 1.25564 0.95326 1.03859 1.02104 1.69824 0.99905 1.59335 1.33076 0.85148 0.77108 0.77269 0.80255 1.21822 1.22796 1.18907 1.23367 1.01805 0.99096 0.93714 1.22713 0.95899 0.88230 0.96376 1.48419 1.50291 1.30769 1.04183 1.16663 0.80756 0.82431 0.80814 1.90790 1.37367 1.33047 1.83583 1.25564 1.09680 1.10663 0.98366 1.22209 0.97727 0.96812 0.87380 1.66323 1.08089 1.07917 1.38948 1.28196 0.98138 0.99146 0.96968 1.20090 0.90322 0.94165 1.01062 1.22149 0.95229 1.03365 0.97376 1.23124 1.04057 1.01649 0.93312 1.23103 0.96508 0.97745 1.02338 1.83893 1.29702 1.31250 1.04756 0.93455 0.92103 0.92337 0.78373 0.94157 0.92283 0.88287 0.89099 0.88017 0.80036 0.86415 0.88020 0.88292 0.88306 0.88983 0.87816 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.72 7.91 71.98 0.57 -5.15 16 2 C 0.13 4.72 3.51 45.34 0.16 4.88 16 3 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 4 C 0.17 6.07 3.48 46.18 0.16 6.23 16 5 H 0.08 2.67 8.09 -2.38 -0.02 2.65 16 6 N -0.73 -34.58 4.94 -317.34 -1.57 -36.15 16 7 C -0.24 -12.32 9.96 84.03 0.84 -11.48 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 C -0.08 -4.22 5.50 84.86 0.47 -3.76 16 10 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16 11 Si 0.97 44.56 29.55 68.60 2.03 46.59 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 14 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 15 C -0.14 -4.06 6.77 31.98 0.22 -3.84 16 16 C 0.09 2.11 5.30 86.86 0.46 2.57 16 17 N -0.60 -18.21 3.08 -792.73 -2.44 -20.65 16 18 C 0.60 19.40 7.63 86.45 0.66 20.06 16 19 O -0.57 -22.10 15.59 -4.29 -0.07 -22.16 16 20 C -0.32 -8.16 6.35 23.88 0.15 -8.00 16 21 C 0.12 2.96 11.10 84.23 0.93 3.89 16 22 N -0.50 -11.35 10.51 -190.29 -2.00 -13.35 16 23 C 0.05 0.85 6.59 88.46 0.58 1.43 16 24 C -0.02 -0.17 6.07 29.85 0.18 0.01 16 25 C -0.16 -1.71 5.72 -10.80 -0.06 -1.77 16 26 C -0.18 -1.90 10.18 30.60 0.31 -1.59 16 27 C -0.16 -1.17 10.25 30.60 0.31 -0.86 16 28 S 0.24 4.13 18.90 -56.49 -1.07 3.06 16 29 H 0.05 1.89 8.01 -2.39 -0.02 1.87 16 30 H 0.06 2.61 6.82 -2.38 -0.02 2.59 16 31 H 0.06 2.31 6.59 -2.39 -0.02 2.30 16 32 H 0.38 19.67 5.06 -92.70 -0.47 19.20 16 33 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.09 1.80 5.81 -9.30 -0.05 1.74 16 37 H 0.10 1.84 7.97 -2.39 -0.02 1.82 16 38 H 0.18 4.50 8.06 -2.91 -0.02 4.47 16 39 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.10 1.05 7.88 -2.39 -0.02 1.03 16 41 H 0.10 1.20 8.07 -2.38 -0.02 1.18 16 42 H 0.10 0.98 8.03 -2.39 -0.02 0.96 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.11 0.53 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -68.55 376.80 1.61 -66.94 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.50 Total: 31.03 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 5.94 Total: 2.62 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -5.73 Total: -128.08 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.07 Total: -22.16 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.07 Total: 3.06 kcal Total: -68.55 1.61 -66.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986604042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.528 kcal (2) G-P(sol) polarization free energy of solvation -68.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds