Wall clock time and date at job start Tue Mar 31 2020 19:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.99607 * 2 1 4 4 C 1.54332 * 109.77738 * 121.16150 * 2 1 3 5 5 H 1.09002 * 110.51513 * 215.81069 * 4 2 1 6 6 N 1.46500 * 111.00706 * 338.95805 * 4 2 1 7 7 C 1.36928 * 120.00466 * 200.23425 * 6 4 2 8 8 H 1.08005 * 120.00130 * 0.02562 * 7 6 4 9 9 C 1.38819 * 120.00457 * 179.97438 * 7 6 4 10 10 N 1.31619 * 119.99528 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00023 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47295 * 90.00124 * 11 9 7 13 13 H 1.48509 * 109.46751 * 209.99909 * 11 9 7 14 14 H 1.48496 * 109.47064 * 329.99622 * 11 9 7 15 15 C 1.55161 * 103.02125 * 97.49995 * 4 2 1 16 16 C 1.54909 * 101.57947 * 35.30137 * 15 4 2 17 17 N 1.47016 * 109.88203 * 238.90415 * 2 1 3 18 18 C 1.34774 * 125.65062 * 59.55897 * 17 2 1 19 19 O 1.21281 * 120.00118 * 359.71394 * 18 17 2 20 20 C 1.50706 * 120.00010 * 179.71590 * 18 17 2 21 21 C 1.50708 * 109.46803 * 179.97438 * 20 18 17 22 22 C 1.33640 * 122.74519 * 84.97804 * 21 20 18 23 23 S 1.76196 * 107.92073 * 180.02562 * 22 21 20 24 24 C 1.70978 * 90.28623 * 359.97438 * 23 22 21 25 25 C 1.50690 * 124.91734 * 179.97438 * 24 23 22 26 26 C 1.53000 * 117.50063 * 60.02860 * 25 24 23 27 27 C 1.53002 * 60.02940 * 252.49714 * 26 25 24 28 28 N 1.29032 * 110.16207 * 0.24526 * 24 23 22 29 29 H 1.09000 * 109.47087 * 179.64212 * 1 2 3 30 30 H 1.09001 * 109.47228 * 299.64532 * 1 2 3 31 31 H 1.09003 * 109.47454 * 59.64060 * 1 2 3 32 32 H 0.97003 * 119.99585 * 20.23587 * 6 4 2 33 33 H 0.96996 * 119.99771 * 180.02562 * 10 9 7 34 34 H 1.09001 * 110.99713 * 277.23425 * 15 4 2 35 35 H 1.08994 * 111.03715 * 153.39412 * 15 4 2 36 36 H 1.08996 * 110.36970 * 204.15369 * 16 15 4 37 37 H 1.09003 * 110.45790 * 81.88161 * 16 15 4 38 38 H 1.08997 * 109.46979 * 60.00573 * 20 18 17 39 39 H 1.08993 * 109.46919 * 300.00112 * 20 18 17 40 40 H 1.08004 * 126.03914 * 0.03525 * 22 21 20 41 41 H 1.09007 * 115.55011 * 205.69650 * 25 24 23 42 42 H 1.09002 * 117.49833 * 359.97438 * 26 25 24 43 43 H 1.09002 * 117.49953 * 144.99860 * 26 25 24 44 44 H 1.09000 * 117.49996 * 107.50493 * 27 26 25 45 45 H 1.08999 * 117.49664 * 252.51862 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2427 5 1 2.9605 -0.2814 1.6197 6 7 1.0288 -0.8105 2.2893 7 6 1.3907 -1.0479 3.5884 8 1 2.4308 -1.1912 3.8416 9 6 0.4210 -1.1033 4.5801 10 7 -0.8464 -0.9271 4.2718 11 14 0.9150 -1.4264 6.3524 12 1 1.1845 -0.1352 7.0345 13 1 -0.1867 -2.1353 7.0519 14 1 2.1397 -2.2658 6.3797 15 6 2.3562 -2.1697 0.6916 16 6 2.8612 -1.8465 -0.7368 17 7 2.0300 -0.7140 -1.1839 18 6 1.7753 -0.3845 -2.4656 19 8 1.0746 0.5727 -2.7180 20 6 2.3613 -1.2054 -3.5854 21 6 1.9271 -0.6314 -4.9095 22 6 2.5728 0.3740 -5.5081 23 16 1.7391 0.7305 -7.0189 24 6 0.6058 -0.5082 -6.6958 25 6 -0.5468 -0.8782 -7.5932 26 6 -0.2160 -1.3421 -9.0131 27 6 -0.8374 0.0373 -8.7850 28 7 0.8770 -1.0765 -5.5695 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3634 0.5083 0.8931 31 1 -0.3634 0.5194 -0.8867 32 1 0.0946 -0.6814 2.0619 33 1 -1.5239 -0.9654 4.9648 34 1 1.4521 -2.7777 0.6580 35 1 3.1326 -2.6597 1.2790 36 1 2.7178 -2.7048 -1.3931 37 1 3.9125 -1.5594 -0.7133 38 1 2.0108 -2.2343 -3.5035 39 1 3.4491 -1.1857 -3.5196 40 1 3.4506 0.8787 -5.1323 41 1 -1.3982 -1.3443 -7.0970 42 1 0.8354 -1.3792 -9.2983 43 1 -0.8497 -2.1133 -9.4511 44 1 -0.1948 0.9073 -8.9200 45 1 -1.8799 0.1735 -9.0725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987143254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:51 Heat of formation + Delta-G solvation = 58.706367 kcal Electronic energy + Delta-G solvation = -26053.731194 eV Core-core repulsion = 22392.576030 eV Total energy + Delta-G solvation = -3661.155164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.49866 -39.59899 -37.72819 -37.18262 -34.18290 -32.41109 -31.42529 -30.67361 -29.22907 -27.86628 -25.85124 -25.19884 -23.54682 -22.88892 -22.68401 -21.59832 -20.24136 -19.43683 -18.59090 -17.83479 -17.52160 -16.89651 -16.46207 -15.64373 -15.44600 -15.14470 -14.69525 -14.44738 -14.19400 -14.00911 -13.72945 -13.46409 -13.22061 -13.01434 -12.62048 -12.45719 -12.22613 -12.07254 -12.03241 -11.76976 -11.49794 -11.43601 -11.22728 -11.16634 -10.98015 -10.97077 -10.81304 -10.45384 -10.21489 -9.98391 -9.80171 -9.74011 -9.56306 -9.46033 -8.95283 -8.79336 -8.38124 -7.02566 -5.81694 -3.11557 0.52336 1.15974 1.54131 2.47832 2.81189 3.24876 3.40940 3.42650 3.46128 3.47915 3.66923 4.34077 4.48604 4.52619 4.54956 4.67257 4.83589 4.94617 5.04744 5.11260 5.15861 5.24960 5.28901 5.38456 5.39047 5.53698 5.55040 5.59258 5.60375 5.64780 5.65930 5.82669 5.95052 6.06851 6.12032 6.24306 6.33545 6.56747 6.58398 6.73551 6.84875 7.00778 7.61509 7.65814 7.77937 8.35745 8.37990 9.48289 10.03745 10.38644 11.40796 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028864 B = 0.002135 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.817395 B =13110.469976 C =13467.628358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.130 3.870 3 H 0.070 0.930 4 C 0.174 3.826 5 H 0.062 0.938 6 N -0.717 5.717 7 C -0.244 4.244 8 H 0.071 0.929 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C -0.153 4.153 16 C 0.096 3.904 17 N -0.609 5.609 18 C 0.531 3.469 19 O -0.535 6.535 20 C -0.065 4.065 21 C 0.095 3.905 22 C -0.245 4.245 23 S 0.116 5.884 24 C 0.082 3.918 25 C -0.085 4.085 26 C -0.160 4.160 27 C -0.169 4.169 28 N -0.460 5.460 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.391 0.609 33 H 0.256 0.744 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.176 0.824 41 H 0.134 0.866 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.250 -0.577 -26.782 27.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 H 0.088 0.912 4 C 0.062 3.938 5 H 0.080 0.920 6 N -0.361 5.361 7 C -0.375 4.375 8 H 0.089 0.911 9 C -0.208 4.208 10 N -0.579 5.579 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.195 4.195 16 C -0.027 4.027 17 N -0.344 5.344 18 C 0.319 3.681 19 O -0.412 6.412 20 C -0.107 4.107 21 C -0.037 4.037 22 C -0.384 4.384 23 S 0.372 5.628 24 C -0.196 4.196 25 C -0.107 4.107 26 C -0.198 4.198 27 C -0.207 4.207 28 N -0.173 5.173 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.229 0.771 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.194 0.806 41 H 0.151 0.849 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.117 0.883 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.724 0.245 -27.412 28.226 hybrid contribution 0.266 -0.587 1.945 2.049 sum 6.990 -0.343 -25.467 26.411 Atomic orbital electron populations 1.21991 0.94593 1.02435 1.02582 1.21811 0.95415 0.95648 0.84469 0.91157 1.21171 0.93192 0.92069 0.87406 0.92008 1.42663 1.05162 1.85313 1.02951 1.19230 0.92960 1.41283 0.84004 0.91062 1.24768 0.95306 1.02543 0.98162 1.69661 0.99338 1.56325 1.32525 0.86170 0.77195 0.77729 0.84938 1.21686 1.21775 1.20725 1.23544 1.01710 1.01306 0.92894 1.22411 0.94410 0.88493 0.97430 1.48581 1.50226 1.30730 1.04850 1.19884 0.81131 0.84991 0.82134 1.90700 1.38267 1.29083 1.83164 1.20183 1.01960 1.00836 0.87735 1.19442 0.91726 0.95604 0.96925 1.26733 1.07947 1.04228 0.99457 1.83704 1.22561 1.35708 1.20876 1.25980 1.00626 0.97130 0.95907 1.20424 0.96383 1.05778 0.88096 1.23139 1.02513 0.98016 0.96180 1.23160 1.03049 0.94303 1.00192 1.65885 1.16318 1.29402 1.05735 0.92525 0.90323 0.92213 0.77104 0.93372 0.90635 0.90564 0.91284 0.91571 0.87142 0.87336 0.80636 0.84851 0.88279 0.87442 0.88323 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 7.94 37.16 0.30 -2.80 16 2 C 0.13 2.35 3.49 -66.95 -0.23 2.11 16 3 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.17 3.33 3.44 -66.09 -0.23 3.10 16 5 H 0.06 1.18 8.12 -51.93 -0.42 0.75 16 6 N -0.72 -17.43 5.02 -51.64 -0.26 -17.69 16 7 C -0.24 -6.54 9.98 -15.06 -0.15 -6.69 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 10 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 11 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C -0.15 -2.48 6.77 -24.58 -0.17 -2.64 16 16 C 0.10 1.22 6.69 -2.53 -0.02 1.20 16 17 N -0.61 -9.42 3.08 -163.02 -0.50 -9.92 16 18 C 0.53 8.39 7.63 -10.98 -0.08 8.31 16 19 O -0.54 -10.49 14.92 5.56 0.08 -10.40 16 20 C -0.06 -0.77 5.12 -29.03 -0.15 -0.92 16 21 C 0.09 1.26 5.23 -84.22 -0.44 0.82 16 22 C -0.24 -2.80 11.14 29.12 0.32 -2.47 16 23 S 0.12 1.15 21.94 -107.50 -2.36 -1.21 16 24 C 0.08 0.96 7.04 -13.46 -0.09 0.86 16 25 C -0.09 -0.76 6.33 -91.74 -0.58 -1.34 16 26 C -0.16 -0.99 10.23 -26.73 -0.27 -1.27 16 27 C -0.17 -1.07 10.02 -26.69 -0.27 -1.34 16 28 N -0.46 -6.53 10.53 -8.06 -0.08 -6.62 16 29 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 30 H 0.08 1.66 6.74 -51.93 -0.35 1.31 16 31 H 0.06 1.19 6.74 -51.93 -0.35 0.84 16 32 H 0.39 10.11 4.97 -40.82 -0.20 9.91 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.73 7.48 -51.93 -0.39 0.34 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.11 1.22 7.85 -51.93 -0.41 0.81 16 39 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.18 1.62 8.06 -52.48 -0.42 1.19 16 41 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.61 7.23 -51.93 -0.38 0.24 16 45 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -33.52 380.63 -10.53 -44.05 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.69 Total: 9.57 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.16 Total: -3.48 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.12 Total: -61.22 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.36 Total: -1.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.52 -10.53 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987143254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.757 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds