Wall clock time and date at job start Tue Mar 31 2020 19:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.99607 * 2 1 4 4 C 1.54332 * 109.77738 * 121.16150 * 2 1 3 5 5 H 1.09002 * 110.51513 * 215.81069 * 4 2 1 6 6 N 1.46500 * 111.00706 * 338.95805 * 4 2 1 7 7 C 1.36928 * 120.00466 * 200.23425 * 6 4 2 8 8 H 1.08005 * 120.00130 * 0.02562 * 7 6 4 9 9 C 1.38819 * 120.00457 * 179.97438 * 7 6 4 10 10 N 1.31619 * 119.99528 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00023 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47295 * 90.00124 * 11 9 7 13 13 H 1.48509 * 109.46751 * 209.99909 * 11 9 7 14 14 H 1.48496 * 109.47064 * 329.99622 * 11 9 7 15 15 C 1.55161 * 103.02125 * 97.49995 * 4 2 1 16 16 C 1.54909 * 101.57947 * 35.30137 * 15 4 2 17 17 N 1.47016 * 109.88203 * 238.90415 * 2 1 3 18 18 C 1.34774 * 125.65062 * 59.55897 * 17 2 1 19 19 O 1.21281 * 120.00118 * 359.71394 * 18 17 2 20 20 C 1.50706 * 120.00010 * 179.71590 * 18 17 2 21 21 C 1.50708 * 109.46803 * 179.97438 * 20 18 17 22 22 C 1.33640 * 122.74519 * 84.97804 * 21 20 18 23 23 S 1.76196 * 107.92073 * 180.02562 * 22 21 20 24 24 C 1.70978 * 90.28623 * 359.97438 * 23 22 21 25 25 C 1.50690 * 124.91734 * 179.97438 * 24 23 22 26 26 C 1.53000 * 117.50063 * 60.02860 * 25 24 23 27 27 C 1.53002 * 60.02940 * 252.49714 * 26 25 24 28 28 N 1.29032 * 110.16207 * 0.24526 * 24 23 22 29 29 H 1.09000 * 109.47087 * 179.64212 * 1 2 3 30 30 H 1.09001 * 109.47228 * 299.64532 * 1 2 3 31 31 H 1.09003 * 109.47454 * 59.64060 * 1 2 3 32 32 H 0.97003 * 119.99585 * 20.23587 * 6 4 2 33 33 H 0.96996 * 119.99771 * 180.02562 * 10 9 7 34 34 H 1.09001 * 110.99713 * 277.23425 * 15 4 2 35 35 H 1.08994 * 111.03715 * 153.39412 * 15 4 2 36 36 H 1.08996 * 110.36970 * 204.15369 * 16 15 4 37 37 H 1.09003 * 110.45790 * 81.88161 * 16 15 4 38 38 H 1.08997 * 109.46979 * 60.00573 * 20 18 17 39 39 H 1.08993 * 109.46919 * 300.00112 * 20 18 17 40 40 H 1.08004 * 126.03914 * 0.03525 * 22 21 20 41 41 H 1.09007 * 115.55011 * 205.69650 * 25 24 23 42 42 H 1.09002 * 117.49833 * 359.97438 * 26 25 24 43 43 H 1.09002 * 117.49953 * 144.99860 * 26 25 24 44 44 H 1.09000 * 117.49996 * 107.50493 * 27 26 25 45 45 H 1.08999 * 117.49664 * 252.51862 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2427 5 1 2.9605 -0.2814 1.6197 6 7 1.0288 -0.8105 2.2893 7 6 1.3907 -1.0479 3.5884 8 1 2.4308 -1.1912 3.8416 9 6 0.4210 -1.1033 4.5801 10 7 -0.8464 -0.9271 4.2718 11 14 0.9150 -1.4264 6.3524 12 1 1.1845 -0.1352 7.0345 13 1 -0.1867 -2.1353 7.0519 14 1 2.1397 -2.2658 6.3797 15 6 2.3562 -2.1697 0.6916 16 6 2.8612 -1.8465 -0.7368 17 7 2.0300 -0.7140 -1.1839 18 6 1.7753 -0.3845 -2.4656 19 8 1.0746 0.5727 -2.7180 20 6 2.3613 -1.2054 -3.5854 21 6 1.9271 -0.6314 -4.9095 22 6 2.5728 0.3740 -5.5081 23 16 1.7391 0.7305 -7.0189 24 6 0.6058 -0.5082 -6.6958 25 6 -0.5468 -0.8782 -7.5932 26 6 -0.2160 -1.3421 -9.0131 27 6 -0.8374 0.0373 -8.7850 28 7 0.8770 -1.0765 -5.5695 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3634 0.5083 0.8931 31 1 -0.3634 0.5194 -0.8867 32 1 0.0946 -0.6814 2.0619 33 1 -1.5239 -0.9654 4.9648 34 1 1.4521 -2.7777 0.6580 35 1 3.1326 -2.6597 1.2790 36 1 2.7178 -2.7048 -1.3931 37 1 3.9125 -1.5594 -0.7133 38 1 2.0108 -2.2343 -3.5035 39 1 3.4491 -1.1857 -3.5196 40 1 3.4506 0.8787 -5.1323 41 1 -1.3982 -1.3443 -7.0970 42 1 0.8354 -1.3792 -9.2983 43 1 -0.8497 -2.1133 -9.4511 44 1 -0.1948 0.9073 -8.9200 45 1 -1.8799 0.1735 -9.0725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987143254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:50 Heat of formation + Delta-G solvation = 37.635375 kcal Electronic energy + Delta-G solvation = -26054.644901 eV Core-core repulsion = 22392.576030 eV Total energy + Delta-G solvation = -3662.068871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.57669 -40.68759 -38.85708 -38.03593 -35.92508 -33.75565 -32.84576 -32.06625 -30.75402 -28.95701 -26.79396 -26.65768 -25.37780 -23.95370 -23.36401 -22.42696 -21.29218 -20.60253 -19.88502 -19.43759 -18.65472 -18.18731 -17.21403 -16.99465 -16.62944 -16.39895 -15.99727 -15.71668 -15.45754 -15.12927 -14.96541 -14.64553 -14.46543 -14.24591 -13.88997 -13.63086 -13.44921 -13.23732 -13.07913 -12.97105 -12.91776 -12.84928 -12.58994 -12.52004 -12.23088 -12.08990 -12.02595 -11.82353 -11.60624 -11.52411 -11.51121 -10.91897 -10.87634 -10.65638 -10.31572 -9.66763 -9.60323 -9.01311 -7.93480 -5.22714 -0.29969 0.37514 0.71410 1.48955 1.50779 1.53431 1.59057 1.62249 2.11763 2.58048 2.81520 2.99393 3.37197 3.53812 3.70385 3.77912 3.79066 3.88945 3.98942 4.00023 4.11319 4.19382 4.22096 4.36522 4.39512 4.41661 4.46192 4.56366 4.64168 4.70334 4.71799 4.79746 4.86359 4.91441 5.02350 5.04903 5.12556 5.16518 5.19053 5.26258 5.33575 5.51042 5.55764 6.27968 6.57152 6.77990 7.14891 7.34918 8.08974 8.32175 9.30398 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028864 B = 0.002135 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.817395 B =13110.469976 C =13467.628358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.136 3.864 3 H 0.065 0.935 4 C 0.165 3.835 5 H 0.069 0.931 6 N -0.734 5.734 7 C -0.236 4.236 8 H 0.083 0.917 9 C -0.079 4.079 10 N -0.973 5.973 11 Si 0.974 3.026 12 H -0.290 1.290 13 H -0.300 1.300 14 H -0.265 1.265 15 C -0.146 4.146 16 C 0.103 3.897 17 N -0.609 5.609 18 C 0.528 3.472 19 O -0.581 6.581 20 C -0.054 4.054 21 C 0.069 3.931 22 C -0.256 4.256 23 S 0.158 5.842 24 C 0.066 3.934 25 C -0.116 4.116 26 C -0.144 4.144 27 C -0.158 4.158 28 N -0.501 5.501 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.379 0.621 33 H 0.250 0.750 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.148 0.852 40 H 0.196 0.804 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.100 0.900 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.886 -1.332 -28.621 30.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.083 0.917 4 C 0.055 3.945 5 H 0.087 0.913 6 N -0.377 5.377 7 C -0.367 4.367 8 H 0.101 0.899 9 C -0.271 4.271 10 N -0.624 5.624 11 Si 0.804 3.196 12 H -0.217 1.217 13 H -0.227 1.227 14 H -0.189 1.189 15 C -0.186 4.186 16 C -0.019 4.019 17 N -0.342 5.342 18 C 0.318 3.682 19 O -0.461 6.461 20 C -0.096 4.096 21 C -0.063 4.063 22 C -0.395 4.395 23 S 0.414 5.586 24 C -0.211 4.211 25 C -0.138 4.138 26 C -0.182 4.182 27 C -0.196 4.196 28 N -0.215 5.215 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.215 0.785 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.138 0.862 39 H 0.166 0.834 40 H 0.213 0.787 41 H 0.142 0.858 42 H 0.120 0.880 43 H 0.143 0.857 44 H 0.119 0.881 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.438 -0.537 -29.291 30.778 hybrid contribution -0.547 -0.291 2.386 2.466 sum 8.891 -0.828 -26.904 28.348 Atomic orbital electron populations 1.21794 0.96264 1.01090 1.00915 1.21539 0.93908 0.95783 0.85583 0.91687 1.21397 0.92053 0.94357 0.86645 0.91285 1.42860 1.05708 1.85566 1.03518 1.19663 0.93315 1.38743 0.85026 0.89869 1.25593 0.95389 1.03898 1.02226 1.69834 1.00391 1.58849 1.33279 0.85120 0.76994 0.77438 0.80078 1.21732 1.22726 1.18911 1.23357 1.01370 0.98493 0.95408 1.22598 0.95387 0.88585 0.95331 1.48612 1.50371 1.31119 1.04139 1.20639 0.80277 0.84676 0.82647 1.90678 1.40279 1.31300 1.83800 1.20226 1.03953 1.00023 0.85416 1.19700 0.92202 0.96709 0.97671 1.27093 1.08542 1.03774 1.00054 1.83456 1.21208 1.34251 1.19706 1.26482 1.01483 0.97339 0.95772 1.20548 0.95854 1.08409 0.88997 1.23248 1.03096 0.98408 0.93476 1.23281 1.04134 0.94348 0.97798 1.65915 1.17422 1.31108 1.07079 0.93649 0.92578 0.93059 0.78539 0.94168 0.92902 0.89112 0.88135 0.88064 0.86189 0.83418 0.78729 0.85770 0.87957 0.85746 0.88119 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.83 7.94 71.98 0.57 -5.26 16 2 C 0.14 4.91 3.49 45.35 0.16 5.07 16 3 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.17 6.22 3.44 46.18 0.16 6.38 16 5 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16 6 N -0.73 -36.17 5.02 -317.30 -1.59 -37.77 16 7 C -0.24 -12.65 9.98 84.04 0.84 -11.81 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 10 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 11 Si 0.97 45.58 29.55 68.60 2.03 47.60 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 14 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 15 C -0.15 -4.41 6.77 31.99 0.22 -4.19 16 16 C 0.10 2.23 6.69 86.85 0.58 2.81 16 17 N -0.61 -17.77 3.08 -788.05 -2.43 -20.20 16 18 C 0.53 16.00 7.63 87.66 0.67 16.67 16 19 O -0.58 -22.87 14.92 -3.03 -0.05 -22.92 16 20 C -0.05 -1.16 5.12 29.11 0.15 -1.01 16 21 C 0.07 1.74 5.23 41.53 0.22 1.95 16 22 C -0.26 -5.43 11.14 66.78 0.74 -4.68 16 23 S 0.16 2.91 21.94 -56.49 -1.24 1.67 16 24 C 0.07 1.52 7.04 88.52 0.62 2.15 16 25 C -0.12 -2.00 6.33 -11.52 -0.07 -2.07 16 26 C -0.14 -1.52 10.23 30.60 0.31 -1.21 16 27 C -0.16 -1.73 10.02 30.62 0.31 -1.42 16 28 N -0.50 -14.08 10.53 -179.40 -1.89 -15.97 16 29 H 0.04 1.91 8.06 -2.39 -0.02 1.89 16 30 H 0.06 2.52 6.74 -2.39 -0.02 2.50 16 31 H 0.05 2.15 6.74 -2.39 -0.02 2.14 16 32 H 0.38 20.38 4.97 -92.71 -0.46 19.92 16 33 H 0.25 14.96 8.31 -92.71 -0.77 14.18 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.10 1.65 7.48 -2.39 -0.02 1.63 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.12 2.34 7.85 -2.39 -0.02 2.32 16 39 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.10 1.06 7.23 -2.39 -0.02 1.04 16 45 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -75.80 380.63 1.60 -74.20 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.54 Total: 33.50 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 5.94 Total: -0.65 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -5.63 Total: -133.42 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.24 Total: 1.67 kcal Total: -75.80 1.60 -74.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987143254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.837 kcal (2) G-P(sol) polarization free energy of solvation -75.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds