Wall clock time and date at job start Tue Mar 31 2020 19:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87705 * 2 1 4 4 C 1.54319 * 109.88662 * 121.01683 * 2 1 3 5 5 H 1.09003 * 110.71646 * 23.24879 * 4 2 1 6 6 N 1.46502 * 110.72273 * 259.97604 * 4 2 1 7 7 C 1.36934 * 119.99911 * 154.99628 * 6 4 2 8 8 H 1.08001 * 120.00419 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99796 * 179.97438 * 7 6 4 10 10 N 1.31623 * 119.99987 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99989 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46766 * 90.00055 * 11 9 7 13 13 H 1.48501 * 109.47237 * 209.99829 * 11 9 7 14 14 H 1.48498 * 109.47154 * 330.00506 * 11 9 7 15 15 C 1.55158 * 102.94298 * 141.60794 * 4 2 1 16 16 C 1.54904 * 101.58496 * 324.50135 * 15 4 2 17 17 N 1.47023 * 109.88230 * 238.98837 * 2 1 3 18 18 C 1.34779 * 125.65235 * 61.60280 * 17 2 1 19 19 O 1.21282 * 119.99391 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00233 * 179.97438 * 18 17 2 21 21 C 1.50698 * 109.47256 * 180.02562 * 20 18 17 22 22 C 1.33642 * 122.74911 * 84.70747 * 21 20 18 23 23 S 1.76194 * 107.92544 * 179.97438 * 22 21 20 24 24 C 1.70982 * 90.28382 * 0.27569 * 23 22 21 25 25 C 1.50697 * 124.91744 * 179.84137 * 24 23 22 26 26 C 1.52988 * 117.50118 * 8.62054 * 25 24 23 27 27 C 1.52994 * 60.00339 * 252.51114 * 26 25 24 28 28 N 1.29034 * 110.16420 * 359.84202 * 24 23 22 29 29 H 1.09002 * 109.47153 * 299.29616 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.29807 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.29788 * 1 2 3 32 32 H 0.97001 * 119.99497 * 334.99305 * 6 4 2 33 33 H 0.96999 * 120.00042 * 179.97438 * 10 9 7 34 34 H 1.09002 * 111.00062 * 82.57845 * 15 4 2 35 35 H 1.09007 * 111.00472 * 206.42304 * 15 4 2 36 36 H 1.08994 * 110.36903 * 155.84534 * 16 15 4 37 37 H 1.09003 * 110.36693 * 278.05969 * 16 15 4 38 38 H 1.09008 * 109.47238 * 300.00310 * 20 18 17 39 39 H 1.09005 * 109.47018 * 60.00332 * 20 18 17 40 40 H 1.08001 * 126.03354 * 0.04188 * 22 21 20 41 41 H 1.09003 * 115.54495 * 154.33176 * 25 24 23 42 42 H 1.08999 * 117.49952 * 0.02562 * 26 25 24 43 43 H 1.09006 * 117.50000 * 145.01941 * 26 25 24 44 44 H 1.08995 * 117.50278 * 252.51201 * 27 26 25 45 45 H 1.08999 * 117.51792 * 107.47571 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4555 0.1992 2.2872 7 6 2.4583 -0.1896 3.6002 8 1 2.1655 -1.1945 3.8665 9 6 2.8384 0.7076 4.5889 10 7 3.1966 1.9318 4.2643 11 14 2.8415 0.1774 6.3801 12 1 4.1710 -0.3856 6.7273 13 1 2.5602 1.3518 7.2444 14 1 1.7958 -0.8554 6.5925 15 6 3.2876 -1.5133 0.6943 16 6 2.8146 -1.8804 -0.7343 17 7 2.0300 -0.7123 -1.1850 18 6 1.8074 -0.3585 -2.4663 19 8 1.1435 0.6250 -2.7171 20 6 2.3842 -1.1843 -3.5872 21 6 1.9920 -0.5790 -4.9103 22 6 2.6780 0.4152 -5.4823 23 16 1.8845 0.8166 -7.0034 24 6 0.7045 -0.3868 -6.7152 25 6 -0.4450 -0.7057 -7.6360 26 6 -0.4535 -0.0384 -9.0127 27 6 -1.4416 0.4156 -7.9365 28 7 0.9408 -0.9822 -5.5951 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3634 0.5247 -0.8836 32 1 2.7189 1.1016 2.0480 33 1 3.4619 2.5588 4.9552 34 1 4.1655 -0.8679 0.6615 35 1 3.4853 -2.4093 1.2828 36 1 3.6716 -2.0356 -1.3896 37 1 2.1903 -2.7736 -0.7094 38 1 3.4709 -1.2015 -3.5037 39 1 1.9988 -2.2020 -3.5243 40 1 3.5631 0.8881 -5.0831 41 1 -0.8356 -1.7209 -7.5660 42 1 0.3726 0.6310 -9.2526 43 1 -0.8497 -0.6146 -9.8489 44 1 -2.4878 0.1381 -8.0645 45 1 -1.2659 1.3839 -7.4678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987143255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:54 Heat of formation + Delta-G solvation = 51.461689 kcal Electronic energy + Delta-G solvation = -25965.501963 eV Core-core repulsion = 22304.032646 eV Total energy + Delta-G solvation = -3661.469317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.48383 -39.55550 -37.70014 -37.14490 -34.12409 -32.44110 -31.39351 -30.84123 -29.33968 -27.95160 -25.85321 -25.20547 -23.13429 -22.88072 -22.70649 -21.52308 -20.32271 -19.83985 -18.75303 -17.81013 -17.27554 -16.87283 -16.46916 -15.99293 -15.23971 -14.97974 -14.76049 -14.44988 -14.13895 -13.90372 -13.57511 -13.44479 -13.35677 -12.98816 -12.63712 -12.60680 -12.40135 -12.04489 -12.03268 -11.78848 -11.61044 -11.45204 -11.20251 -11.13498 -11.02049 -10.97752 -10.85925 -10.58735 -10.25191 -10.04005 -9.81349 -9.79089 -9.61264 -9.47104 -8.96233 -8.78980 -8.38353 -7.04918 -5.83033 -3.13492 0.52774 1.16607 1.54693 2.48246 2.81345 3.20136 3.39952 3.43451 3.45990 3.47268 3.68665 4.34424 4.49352 4.52247 4.53589 4.66434 4.84245 4.94617 5.03010 5.12426 5.17320 5.24425 5.29315 5.34231 5.40444 5.49247 5.54481 5.59490 5.60687 5.65018 5.68430 5.80619 5.92477 5.99011 6.10145 6.12904 6.29976 6.46770 6.58439 6.63242 6.75582 6.91243 7.60693 7.64251 7.77518 8.33681 8.37222 9.45711 10.00232 10.34953 11.39094 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029832 B = 0.002103 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.348845 B =13308.356273 C =13418.139685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.076 0.924 4 C 0.177 3.823 5 H 0.068 0.932 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.156 4.156 16 C 0.097 3.903 17 N -0.610 5.610 18 C 0.531 3.469 19 O -0.536 6.536 20 C -0.064 4.064 21 C 0.094 3.906 22 C -0.243 4.243 23 S 0.118 5.882 24 C 0.080 3.920 25 C -0.085 4.085 26 C -0.169 4.169 27 C -0.159 4.159 28 N -0.461 5.461 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.177 0.823 41 H 0.133 0.867 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 -7.156 -26.370 27.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 H 0.094 0.906 4 C 0.065 3.935 5 H 0.086 0.914 6 N -0.354 5.354 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.198 4.198 16 C -0.026 4.026 17 N -0.344 5.344 18 C 0.319 3.681 19 O -0.413 6.413 20 C -0.107 4.107 21 C -0.038 4.038 22 C -0.382 4.382 23 S 0.373 5.627 24 C -0.198 4.198 25 C -0.107 4.107 26 C -0.208 4.208 27 C -0.198 4.198 28 N -0.174 5.174 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.194 0.806 41 H 0.151 0.849 42 H 0.117 0.883 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.403 -6.352 -27.003 27.948 hybrid contribution 0.541 -0.366 1.911 2.019 sum -2.862 -6.718 -25.092 26.133 Atomic orbital electron populations 1.22033 0.94981 1.01542 1.02612 1.21943 0.94415 0.96895 0.84449 0.90601 1.21242 0.93538 0.91581 0.87181 0.91449 1.42350 1.79250 1.11863 1.01927 1.19215 1.38408 0.96930 0.82903 0.90965 1.24778 1.01939 0.95873 0.98140 1.69667 1.51080 1.04619 1.32380 0.86174 0.77672 0.77272 0.84940 1.21669 1.21751 1.20680 1.23572 1.01401 1.01755 0.93027 1.22462 0.94578 0.88333 0.97219 1.48627 1.52309 1.28674 1.04833 1.19885 0.80835 0.85279 0.82137 1.90701 1.39809 1.27591 1.83174 1.20175 1.02365 1.00429 0.87706 1.19435 0.91467 0.96026 0.96902 1.26759 1.07934 1.04091 0.99411 1.83722 1.21522 1.37209 1.20226 1.25981 1.00426 0.97415 0.96012 1.20393 0.95468 0.99827 0.94981 1.23140 1.02504 1.03333 0.91774 1.23151 0.96472 0.98444 1.01747 1.65882 1.17376 1.29039 1.05130 0.91206 0.93149 0.92118 0.77991 0.93371 0.90663 0.90511 0.91316 0.91540 0.87297 0.87198 0.80576 0.84945 0.88349 0.87259 0.87401 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.10 37.16 0.34 -2.35 16 2 C 0.13 2.28 3.20 -66.96 -0.21 2.07 16 3 H 0.08 1.55 7.71 -51.93 -0.40 1.15 16 4 C 0.18 3.36 3.14 -66.10 -0.21 3.16 16 5 H 0.07 1.29 7.80 -51.93 -0.41 0.89 16 6 N -0.71 -17.27 5.22 -51.65 -0.27 -17.54 16 7 C -0.24 -6.51 9.96 -15.06 -0.15 -6.66 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 11 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 15 C -0.16 -2.48 6.77 -24.58 -0.17 -2.65 16 16 C 0.10 1.23 6.71 -2.35 -0.02 1.22 16 17 N -0.61 -9.44 3.08 -162.76 -0.50 -9.94 16 18 C 0.53 8.41 7.64 -10.99 -0.08 8.33 16 19 O -0.54 -10.53 15.08 5.56 0.08 -10.44 16 20 C -0.06 -0.76 5.13 -29.04 -0.15 -0.91 16 21 C 0.09 1.24 5.23 -84.23 -0.44 0.80 16 22 C -0.24 -2.86 11.14 29.12 0.32 -2.54 16 23 S 0.12 1.19 21.94 -107.50 -2.36 -1.17 16 24 C 0.08 0.92 7.04 -13.45 -0.09 0.83 16 25 C -0.08 -0.73 6.33 -91.78 -0.58 -1.31 16 26 C -0.17 -1.01 10.01 -26.74 -0.27 -1.28 16 27 C -0.16 -1.12 10.23 -26.73 -0.27 -1.40 16 28 N -0.46 -6.42 10.53 -8.06 -0.08 -6.50 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.12 6.89 -51.93 -0.36 0.76 16 32 H 0.39 10.11 7.56 -40.82 -0.31 9.80 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.07 0.69 7.50 -51.93 -0.39 0.30 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 0.99 7.86 -51.92 -0.41 0.58 16 39 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.10 0.57 7.22 -51.93 -0.38 0.20 16 43 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 385.09 15.07 5.80 5.80 Total: -1.00 -33.21 385.09 -10.54 -43.76 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.84 Total: 9.14 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.08 Total: -3.10 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -0.13 Total: -60.87 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.36 Total: -1.17 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.21 -10.54 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987143255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.219 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds