Wall clock time and date at job start Tue Mar 31 2020 19:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87705 * 2 1 4 4 C 1.54319 * 109.88662 * 121.01683 * 2 1 3 5 5 H 1.09003 * 110.71646 * 23.24879 * 4 2 1 6 6 N 1.46502 * 110.72273 * 259.97604 * 4 2 1 7 7 C 1.36934 * 119.99911 * 154.99628 * 6 4 2 8 8 H 1.08001 * 120.00419 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99796 * 179.97438 * 7 6 4 10 10 N 1.31623 * 119.99987 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99989 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46766 * 90.00055 * 11 9 7 13 13 H 1.48501 * 109.47237 * 209.99829 * 11 9 7 14 14 H 1.48498 * 109.47154 * 330.00506 * 11 9 7 15 15 C 1.55158 * 102.94298 * 141.60794 * 4 2 1 16 16 C 1.54904 * 101.58496 * 324.50135 * 15 4 2 17 17 N 1.47023 * 109.88230 * 238.98837 * 2 1 3 18 18 C 1.34779 * 125.65235 * 61.60280 * 17 2 1 19 19 O 1.21282 * 119.99391 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00233 * 179.97438 * 18 17 2 21 21 C 1.50698 * 109.47256 * 180.02562 * 20 18 17 22 22 C 1.33642 * 122.74911 * 84.70747 * 21 20 18 23 23 S 1.76194 * 107.92544 * 179.97438 * 22 21 20 24 24 C 1.70982 * 90.28382 * 0.27569 * 23 22 21 25 25 C 1.50697 * 124.91744 * 179.84137 * 24 23 22 26 26 C 1.52988 * 117.50118 * 8.62054 * 25 24 23 27 27 C 1.52994 * 60.00339 * 252.51114 * 26 25 24 28 28 N 1.29034 * 110.16420 * 359.84202 * 24 23 22 29 29 H 1.09002 * 109.47153 * 299.29616 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.29807 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.29788 * 1 2 3 32 32 H 0.97001 * 119.99497 * 334.99305 * 6 4 2 33 33 H 0.96999 * 120.00042 * 179.97438 * 10 9 7 34 34 H 1.09002 * 111.00062 * 82.57845 * 15 4 2 35 35 H 1.09007 * 111.00472 * 206.42304 * 15 4 2 36 36 H 1.08994 * 110.36903 * 155.84534 * 16 15 4 37 37 H 1.09003 * 110.36693 * 278.05969 * 16 15 4 38 38 H 1.09008 * 109.47238 * 300.00310 * 20 18 17 39 39 H 1.09005 * 109.47018 * 60.00332 * 20 18 17 40 40 H 1.08001 * 126.03354 * 0.04188 * 22 21 20 41 41 H 1.09003 * 115.54495 * 154.33176 * 25 24 23 42 42 H 1.08999 * 117.49952 * 0.02562 * 26 25 24 43 43 H 1.09006 * 117.50000 * 145.01941 * 26 25 24 44 44 H 1.08995 * 117.50278 * 252.51201 * 27 26 25 45 45 H 1.08999 * 117.51792 * 107.47571 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4555 0.1992 2.2872 7 6 2.4583 -0.1896 3.6002 8 1 2.1655 -1.1945 3.8665 9 6 2.8384 0.7076 4.5889 10 7 3.1966 1.9318 4.2643 11 14 2.8415 0.1774 6.3801 12 1 4.1710 -0.3856 6.7273 13 1 2.5602 1.3518 7.2444 14 1 1.7958 -0.8554 6.5925 15 6 3.2876 -1.5133 0.6943 16 6 2.8146 -1.8804 -0.7343 17 7 2.0300 -0.7123 -1.1850 18 6 1.8074 -0.3585 -2.4663 19 8 1.1435 0.6250 -2.7171 20 6 2.3842 -1.1843 -3.5872 21 6 1.9920 -0.5790 -4.9103 22 6 2.6780 0.4152 -5.4823 23 16 1.8845 0.8166 -7.0034 24 6 0.7045 -0.3868 -6.7152 25 6 -0.4450 -0.7057 -7.6360 26 6 -0.4535 -0.0384 -9.0127 27 6 -1.4416 0.4156 -7.9365 28 7 0.9408 -0.9822 -5.5951 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3634 0.5247 -0.8836 32 1 2.7189 1.1016 2.0480 33 1 3.4619 2.5588 4.9552 34 1 4.1655 -0.8679 0.6615 35 1 3.4853 -2.4093 1.2828 36 1 3.6716 -2.0356 -1.3896 37 1 2.1903 -2.7736 -0.7094 38 1 3.4709 -1.2015 -3.5037 39 1 1.9988 -2.2020 -3.5243 40 1 3.5631 0.8881 -5.0831 41 1 -0.8356 -1.7209 -7.5660 42 1 0.3726 0.6310 -9.2526 43 1 -0.8497 -0.6146 -9.8489 44 1 -2.4878 0.1381 -8.0645 45 1 -1.2659 1.3839 -7.4678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987143255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:53 Heat of formation + Delta-G solvation = 30.497773 kcal Electronic energy + Delta-G solvation = -25966.411027 eV Core-core repulsion = 22304.032646 eV Total energy + Delta-G solvation = -3662.378380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55024 -40.64932 -38.79112 -38.03964 -35.90707 -33.72107 -32.88487 -32.14937 -30.86968 -28.99216 -26.86045 -26.65538 -24.86117 -23.93975 -23.37054 -22.38239 -21.62746 -20.87839 -19.98794 -19.14440 -18.64502 -18.12925 -17.39801 -17.10062 -16.59937 -16.25587 -15.81876 -15.55722 -15.42463 -15.16697 -14.88784 -14.74758 -14.55805 -14.31577 -13.87918 -13.69440 -13.43788 -13.27705 -13.14696 -12.99049 -12.90152 -12.68454 -12.57900 -12.52899 -12.24193 -12.14767 -12.11499 -11.82229 -11.72161 -11.54655 -11.51487 -10.97226 -10.85860 -10.67149 -10.32806 -9.67252 -9.61971 -9.02952 -7.94332 -5.24272 -0.31375 0.36316 0.70461 1.48717 1.50490 1.53127 1.58915 1.61281 2.09876 2.57325 2.77170 3.02410 3.36548 3.53575 3.69083 3.77079 3.79175 3.86849 3.97612 4.00898 4.13874 4.18630 4.21453 4.36342 4.38259 4.42401 4.44723 4.52613 4.64786 4.70223 4.71044 4.75278 4.90166 4.93119 5.02266 5.03546 5.12634 5.15167 5.19440 5.25513 5.34837 5.46856 5.54894 6.25931 6.56749 6.75276 7.14176 7.32299 8.04437 8.28248 9.29156 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029832 B = 0.002103 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.348845 B =13308.356273 C =13418.139685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.133 3.867 3 H 0.042 0.958 4 C 0.170 3.830 5 H 0.071 0.929 6 N -0.729 5.729 7 C -0.235 4.235 8 H 0.084 0.916 9 C -0.078 4.078 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.286 1.286 13 H -0.301 1.301 14 H -0.267 1.267 15 C -0.147 4.147 16 C 0.103 3.897 17 N -0.610 5.610 18 C 0.528 3.472 19 O -0.582 6.582 20 C -0.054 4.054 21 C 0.071 3.929 22 C -0.260 4.260 23 S 0.155 5.845 24 C 0.067 3.933 25 C -0.109 4.109 26 C -0.147 4.147 27 C -0.161 4.161 28 N -0.495 5.495 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.371 0.629 33 H 0.250 0.750 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.142 0.858 39 H 0.127 0.873 40 H 0.190 0.810 41 H 0.136 0.864 42 H 0.100 0.900 43 H 0.133 0.867 44 H 0.124 0.876 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 -9.593 -28.083 29.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.061 0.939 4 C 0.060 3.940 5 H 0.089 0.911 6 N -0.368 5.368 7 C -0.367 4.367 8 H 0.102 0.898 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.213 1.213 13 H -0.228 1.228 14 H -0.192 1.192 15 C -0.188 4.188 16 C -0.018 4.018 17 N -0.343 5.343 18 C 0.317 3.683 19 O -0.462 6.462 20 C -0.096 4.096 21 C -0.061 4.061 22 C -0.399 4.399 23 S 0.411 5.589 24 C -0.210 4.210 25 C -0.131 4.131 26 C -0.185 4.185 27 C -0.200 4.200 28 N -0.210 5.210 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.202 0.798 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.160 0.840 39 H 0.145 0.855 40 H 0.207 0.793 41 H 0.154 0.846 42 H 0.118 0.882 43 H 0.152 0.848 44 H 0.142 0.858 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.213 -8.868 -28.754 30.262 hybrid contribution 0.426 0.407 2.316 2.389 sum -2.788 -8.461 -26.438 27.899 Atomic orbital electron populations 1.21915 0.94768 1.02179 1.01253 1.21619 0.94494 0.95480 0.85588 0.93946 1.21439 0.95169 0.91002 0.86355 0.91069 1.42522 1.79647 1.12139 1.02463 1.19631 1.36067 0.97038 0.83970 0.89842 1.25597 1.03038 0.96099 1.02250 1.69837 1.53383 1.05863 1.33134 0.85129 0.77917 0.76658 0.79976 1.21327 1.22787 1.19158 1.23381 0.98835 1.01280 0.95318 1.22651 0.95990 0.87737 0.95464 1.48673 1.52372 1.29149 1.04130 1.20639 0.79997 0.84949 0.82677 1.90680 1.41906 1.29794 1.83830 1.20215 1.04030 1.00015 0.85343 1.19693 0.91891 0.96901 0.97584 1.27079 1.08560 1.03946 1.00346 1.83496 1.20306 1.36129 1.18977 1.26538 1.01214 0.97348 0.95872 1.20568 0.95529 1.00516 0.96441 1.23263 1.01764 1.02316 0.91189 1.23233 0.97397 0.97267 1.02135 1.65920 1.18235 1.30578 1.06273 0.92494 0.91396 0.93491 0.79755 0.94143 0.92391 0.89112 0.87525 0.88824 0.84033 0.85481 0.79278 0.84640 0.88175 0.84844 0.85800 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 9.10 71.98 0.66 -4.42 16 2 C 0.13 4.84 3.20 45.34 0.15 4.98 16 3 H 0.04 1.82 7.71 -2.39 -0.02 1.81 16 4 C 0.17 6.39 3.14 46.18 0.14 6.53 16 5 H 0.07 2.63 7.80 -2.39 -0.02 2.61 16 6 N -0.73 -35.84 5.22 -317.33 -1.66 -37.50 16 7 C -0.24 -12.58 9.96 84.03 0.84 -11.74 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 9 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 10 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 11 Si 0.97 45.38 29.55 68.60 2.03 47.41 16 12 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 13 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 14 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 15 C -0.15 -4.38 6.77 31.98 0.22 -4.16 16 16 C 0.10 2.25 6.71 86.79 0.58 2.83 16 17 N -0.61 -17.96 3.08 -787.25 -2.42 -20.38 16 18 C 0.53 16.16 7.64 87.66 0.67 16.83 16 19 O -0.58 -23.20 15.08 -3.04 -0.05 -23.25 16 20 C -0.05 -1.16 5.13 29.10 0.15 -1.02 16 21 C 0.07 1.81 5.23 41.52 0.22 2.02 16 22 C -0.26 -5.87 11.14 66.78 0.74 -5.12 16 23 S 0.15 2.96 21.94 -56.49 -1.24 1.72 16 24 C 0.07 1.51 7.04 88.52 0.62 2.14 16 25 C -0.11 -1.75 6.33 -11.54 -0.07 -1.82 16 26 C -0.15 -1.44 10.01 30.59 0.31 -1.13 16 27 C -0.16 -2.07 10.23 30.59 0.31 -1.75 16 28 N -0.50 -13.50 10.53 -179.40 -1.89 -15.39 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.78 6.89 -2.38 -0.02 1.77 16 32 H 0.37 20.24 7.56 -92.71 -0.70 19.54 16 33 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.11 1.61 7.50 -2.39 -0.02 1.59 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.14 2.05 7.86 -2.38 -0.02 2.04 16 39 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.19 3.52 8.06 -2.91 -0.02 3.49 16 41 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.10 0.95 7.22 -2.39 -0.02 0.93 16 43 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -74.92 385.09 1.36 -73.56 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.30 Total: 32.71 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 6.00 Total: 0.24 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -5.69 Total: -132.39 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.05 Total: -23.25 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.24 Total: 1.72 kcal Total: -74.92 1.36 -73.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987143255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.061 kcal (2) G-P(sol) polarization free energy of solvation -74.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds