Wall clock time and date at job start Tue Mar 31 2020 19:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 H 1.09002 * 110.72444 * 144.41096 * 4 2 1 6 6 N 1.46504 * 110.71992 * 21.14280 * 4 2 1 7 7 C 1.36935 * 120.00499 * 155.00094 * 6 4 2 8 8 H 1.08004 * 119.99410 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00015 * 180.02562 * 7 6 4 10 10 N 1.31616 * 119.99815 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00199 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.46757 * 90.00309 * 11 9 7 13 13 H 1.48501 * 109.47268 * 210.00118 * 11 9 7 14 14 H 1.48499 * 109.47144 * 330.00324 * 11 9 7 15 15 C 1.55154 * 102.94706 * 262.77585 * 4 2 1 16 16 C 1.54907 * 101.58028 * 324.49859 * 15 4 2 17 17 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 18 18 C 1.34779 * 125.64538 * 300.42781 * 17 2 1 19 19 O 1.21283 * 120.00106 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99863 * 179.97438 * 18 17 2 21 21 C 1.50699 * 109.47078 * 180.02562 * 20 18 17 22 22 C 1.33639 * 122.75116 * 85.02896 * 21 20 18 23 23 S 1.76199 * 107.92247 * 179.97438 * 22 21 20 24 24 C 1.70974 * 90.28364 * 359.97438 * 23 22 21 25 25 C 1.50707 * 124.91491 * 179.97438 * 24 23 22 26 26 C 1.53002 * 117.49846 * 8.64920 * 25 24 23 27 27 C 1.53000 * 117.49728 * 300.02685 * 25 24 23 28 28 N 1.29029 * 110.16644 * 359.73592 * 24 23 22 29 29 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 30 30 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 31 31 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 32 32 H 0.97002 * 119.99396 * 334.99695 * 6 4 2 33 33 H 0.97005 * 120.00598 * 179.97438 * 10 9 7 34 34 H 1.09000 * 111.00258 * 82.56702 * 15 4 2 35 35 H 1.08999 * 111.00896 * 206.38476 * 15 4 2 36 36 H 1.09001 * 110.36979 * 155.84714 * 16 15 4 37 37 H 1.08999 * 110.36689 * 278.06189 * 16 15 4 38 38 H 1.09005 * 109.47279 * 300.00172 * 20 18 17 39 39 H 1.09001 * 109.47052 * 60.00255 * 20 18 17 40 40 H 1.07998 * 126.03752 * 359.97438 * 22 21 20 41 41 H 1.09000 * 115.54735 * 154.35522 * 25 24 23 42 42 H 1.08998 * 117.49998 * 359.97438 * 26 25 24 43 43 H 1.08999 * 117.49580 * 145.02053 * 26 25 24 44 44 H 1.09004 * 117.49424 * 214.97495 * 27 25 24 45 45 H 1.08989 * 117.50167 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 2.9657 -0.2809 -1.6186 6 7 1.0294 -0.7994 -2.2886 7 6 1.3954 -0.9337 -3.6013 8 1 2.4403 -1.0012 -3.8663 9 6 0.4237 -0.9820 -4.5914 10 7 0.7756 -1.1117 -5.8530 11 14 -1.3834 -0.8646 -4.1330 12 1 -1.8035 0.5597 -4.1373 13 1 -2.1945 -1.6228 -5.1191 14 1 -1.5887 -1.4372 -2.7784 15 6 2.3519 -2.1685 -0.6954 16 6 2.8568 -1.8508 0.7342 17 7 2.0300 -0.7157 1.1829 18 6 1.7755 -0.3878 2.4652 19 8 1.0788 0.5721 2.7188 20 6 2.3557 -1.2143 3.5837 21 6 1.9230 -0.6411 4.9086 22 6 0.7577 -0.9514 5.4846 23 16 0.6532 -0.0692 7.0063 24 6 2.1870 0.6286 6.7169 25 6 2.8818 1.5973 7.6389 26 6 2.2606 1.8296 9.0177 27 6 2.1694 2.9164 7.9446 28 7 2.6658 0.2019 5.5973 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.4980 -0.8990 31 1 -0.3634 0.5296 0.8808 32 1 0.0910 -0.7384 -2.0506 33 1 0.0966 -1.1458 -6.5449 34 1 1.4452 -2.7727 -0.6642 35 1 3.1266 -2.6603 -1.2837 36 1 2.7088 -2.7100 1.3885 37 1 3.9096 -1.5695 0.7110 38 1 2.0000 -2.2412 3.4990 39 1 3.4437 -1.2002 3.5193 40 1 0.0119 -1.6240 5.0876 41 1 3.9692 1.6175 7.5666 42 1 1.3492 1.2821 9.2578 43 1 2.9394 2.0026 9.8528 44 1 2.7882 3.8043 8.0738 45 1 1.1985 3.0837 7.4786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987143257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:00 Heat of formation + Delta-G solvation = 41.183546 kcal Electronic energy + Delta-G solvation = -26153.627444 eV Core-core repulsion = 22491.712433 eV Total energy + Delta-G solvation = -3661.915010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.60368 -40.72030 -38.92481 -38.05429 -36.04697 -33.86438 -33.01433 -32.09618 -31.13268 -29.01417 -26.94166 -26.67430 -25.07997 -23.93484 -23.37624 -22.43051 -21.30713 -20.67526 -20.03921 -19.83436 -18.65087 -18.18545 -17.30071 -17.07103 -16.65835 -16.43103 -15.98834 -15.75019 -15.46528 -15.14843 -15.03035 -14.74061 -14.56607 -14.20889 -13.99999 -13.62476 -13.55112 -13.42050 -13.19873 -13.09389 -12.97442 -12.91451 -12.60297 -12.58203 -12.24760 -12.14931 -11.98258 -11.82614 -11.73957 -11.55657 -11.52079 -10.99199 -10.89922 -10.67013 -10.32938 -9.69635 -9.61797 -9.32918 -8.03213 -5.36602 -0.31268 0.36282 0.70704 1.35001 1.37344 1.43702 1.52531 1.60238 2.08696 2.45749 2.76937 3.02091 3.25907 3.49669 3.54567 3.68557 3.78316 3.81794 3.91079 3.98335 4.09926 4.13179 4.20907 4.32803 4.35008 4.38291 4.43638 4.50667 4.58228 4.69663 4.70089 4.77635 4.81735 4.90338 5.00640 5.01871 5.10415 5.13921 5.14716 5.24639 5.30054 5.45859 5.77154 6.20729 6.54280 6.75557 7.05396 7.13117 7.80981 7.99279 9.17778 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026793 B = 0.002278 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.799509 B =12291.147279 C =12559.822420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.132 3.868 3 H 0.062 0.938 4 C 0.169 3.831 5 H 0.069 0.931 6 N -0.745 5.745 7 C -0.225 4.225 8 H 0.066 0.934 9 C -0.059 4.059 10 N -0.979 5.979 11 Si 0.940 3.060 12 H -0.282 1.282 13 H -0.294 1.294 14 H -0.254 1.254 15 C -0.145 4.145 16 C 0.102 3.898 17 N -0.609 5.609 18 C 0.530 3.470 19 O -0.579 6.579 20 C -0.055 4.055 21 C 0.071 3.929 22 C -0.259 4.259 23 S 0.154 5.846 24 C 0.067 3.933 25 C -0.109 4.109 26 C -0.148 4.148 27 C -0.161 4.161 28 N -0.497 5.497 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.369 0.631 33 H 0.257 0.743 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.143 0.857 39 H 0.125 0.875 40 H 0.192 0.808 41 H 0.135 0.865 42 H 0.100 0.900 43 H 0.133 0.867 44 H 0.123 0.877 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.607 -0.665 33.521 33.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 H 0.080 0.920 4 C 0.059 3.941 5 H 0.087 0.913 6 N -0.390 5.390 7 C -0.356 4.356 8 H 0.084 0.916 9 C -0.251 4.251 10 N -0.630 5.630 11 Si 0.768 3.232 12 H -0.208 1.208 13 H -0.221 1.221 14 H -0.179 1.179 15 C -0.186 4.186 16 C -0.019 4.019 17 N -0.342 5.342 18 C 0.320 3.680 19 O -0.459 6.459 20 C -0.097 4.097 21 C -0.061 4.061 22 C -0.398 4.398 23 S 0.410 5.590 24 C -0.210 4.210 25 C -0.131 4.131 26 C -0.186 4.186 27 C -0.200 4.200 28 N -0.212 5.212 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.206 0.794 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.161 0.839 39 H 0.143 0.857 40 H 0.209 0.791 41 H 0.153 0.847 42 H 0.119 0.881 43 H 0.151 0.849 44 H 0.141 0.859 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.122 0.072 34.176 34.319 hybrid contribution -0.940 -0.115 -1.758 1.997 sum 2.182 -0.043 32.418 32.491 Atomic orbital electron populations 1.21943 0.95695 1.01925 1.01600 1.21581 0.94479 0.95779 0.85459 0.91993 1.21354 0.91696 0.94821 0.86219 0.91326 1.42952 1.04598 1.88975 1.02493 1.19042 0.93617 1.40174 0.82810 0.91639 1.25377 1.01746 1.02958 0.95042 1.69851 1.33771 1.59302 1.00062 0.85644 0.81590 0.77894 0.78089 1.20814 1.22078 1.17855 1.23347 1.01953 0.98098 0.95202 1.22585 0.95216 0.88712 0.95435 1.48584 1.50553 1.30982 1.04118 1.20596 0.80090 0.84811 0.82551 1.90679 1.40674 1.30789 1.83724 1.20226 1.04079 1.00028 0.85392 1.19691 0.91826 0.97000 0.97549 1.27077 1.02951 1.09601 1.00139 1.83515 1.18363 1.37983 1.19092 1.26517 0.96665 1.01888 0.95935 1.20568 0.99511 0.96620 0.96387 1.23266 1.03035 1.01097 0.91184 1.23233 1.02086 0.92555 1.02127 1.65922 1.36188 1.12782 1.06279 0.92366 0.92386 0.92181 0.79448 0.93377 0.91507 0.89544 0.87236 0.89129 0.83883 0.85656 0.79095 0.84744 0.88134 0.84925 0.85869 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 7.93 71.98 0.57 -4.71 16 2 C 0.13 4.35 3.48 45.34 0.16 4.50 16 3 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 4 C 0.17 6.00 3.48 46.18 0.16 6.16 16 5 H 0.07 2.53 8.09 -2.39 -0.02 2.51 16 6 N -0.75 -33.44 4.74 -317.33 -1.50 -34.94 16 7 C -0.23 -12.37 10.44 84.03 0.88 -11.49 16 8 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 9 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 10 N -0.98 -61.78 13.97 21.65 0.30 -61.48 16 11 Si 0.94 45.19 27.74 68.60 1.90 47.09 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 13 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 14 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 15 C -0.15 -4.05 6.77 31.98 0.22 -3.83 16 16 C 0.10 2.05 6.69 86.85 0.58 2.63 16 17 N -0.61 -16.30 3.08 -788.06 -2.43 -18.72 16 18 C 0.53 14.82 7.62 87.66 0.67 15.49 16 19 O -0.58 -21.26 14.94 -3.04 -0.05 -21.31 16 20 C -0.06 -1.09 5.12 29.10 0.15 -0.94 16 21 C 0.07 1.69 5.23 41.52 0.22 1.91 16 22 C -0.26 -5.34 11.14 66.78 0.74 -4.59 16 23 S 0.15 2.74 21.94 -56.49 -1.24 1.50 16 24 C 0.07 1.43 7.04 88.52 0.62 2.06 16 25 C -0.11 -1.67 6.33 -11.54 -0.07 -1.75 16 26 C -0.15 -1.35 10.01 30.60 0.31 -1.04 16 27 C -0.16 -1.94 10.23 30.60 0.31 -1.63 16 28 N -0.50 -12.96 10.53 -179.40 -1.89 -14.85 16 29 H 0.06 1.94 8.03 -2.39 -0.02 1.92 16 30 H 0.06 2.12 6.76 -2.39 -0.02 2.11 16 31 H 0.06 2.12 6.77 -2.38 -0.02 2.11 16 32 H 0.37 16.28 2.92 -92.71 -0.27 16.01 16 33 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.11 1.44 7.48 -2.39 -0.02 1.42 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.14 1.77 7.85 -2.38 -0.02 1.76 16 39 H 0.13 2.10 8.14 -2.39 -0.02 2.09 16 40 H 0.19 3.11 8.06 -2.91 -0.02 3.08 16 41 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.10 0.88 7.22 -2.39 -0.02 0.86 16 43 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -76.16 377.54 1.75 -74.41 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.67 Total: 28.52 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 5.98 Total: -0.21 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -5.52 Total: -129.99 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.05 Total: -21.31 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.24 Total: 1.50 kcal Total: -76.16 1.75 -74.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987143257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.589 kcal (2) G-P(sol) polarization free energy of solvation -76.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds