Wall clock time and date at job start Tue Mar 31 2020 19:26:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08997 * 109.99939 * 2 1
4 4 C 1.54327 * 109.88086 * 121.10241 * 2 1 3
5 5 C 1.55153 * 102.94402 * 141.61144 * 4 2 1
6 6 H 1.09000 * 111.00547 * 206.38376 * 5 4 2
7 7 N 1.46495 * 111.00721 * 82.56536 * 5 4 2
8 8 C 1.36932 * 120.00105 * 155.00204 * 7 5 4
9 9 H 1.08001 * 120.00138 * 0.02562 * 8 7 5
10 10 C 1.38817 * 120.00344 * 180.02562 * 8 7 5
11 11 N 1.31616 * 119.99773 * 359.97438 * 10 8 7
12 12 Si 1.86795 * 120.00176 * 179.97438 * 10 8 7
13 13 H 1.48504 * 109.47160 * 89.99938 * 12 10 8
14 14 H 1.48500 * 109.47433 * 210.00033 * 12 10 8
15 15 H 1.48505 * 109.47529 * 330.00013 * 12 10 8
16 16 C 1.54920 * 101.57954 * 324.49275 * 5 4 2
17 17 N 1.47023 * 109.87848 * 238.90610 * 2 1 3
18 18 C 1.34776 * 125.65087 * 61.62596 * 17 2 1
19 19 O 1.21688 * 119.99925 * 356.37034 * 18 17 2
20 20 C 1.46683 * 119.99952 * 176.37933 * 18 17 2
21 21 C 1.35667 * 126.12681 * 186.47584 * 20 18 17
22 22 N 1.30940 * 114.18806 * 179.78282 * 21 20 18
23 23 C 1.29439 * 117.36660 * 0.52259 * 22 21 20
24 24 C 1.50693 * 124.80671 * 179.72987 * 23 22 21
25 25 C 1.53002 * 109.47232 * 89.97596 * 24 23 22
26 26 C 1.53000 * 117.49982 * 243.62364 * 25 24 23
27 27 C 1.52994 * 59.99903 * 252.50663 * 26 25 24
28 28 S 1.70953 * 110.38636 * 359.70755 * 23 22 21
29 29 H 1.08992 * 109.46945 * 298.90089 * 1 2 3
30 30 H 1.08997 * 109.46833 * 58.90244 * 1 2 3
31 31 H 1.09001 * 109.47172 * 178.90504 * 1 2 3
32 32 H 1.09005 * 110.71228 * 259.97044 * 4 2 1
33 33 H 1.08994 * 110.72404 * 23.24323 * 4 2 1
34 34 H 0.97001 * 120.00368 * 334.99865 * 7 5 4
35 35 H 0.97001 * 120.00023 * 179.97438 * 11 10 8
36 36 H 1.09000 * 110.36344 * 155.84920 * 16 5 4
37 37 H 1.08993 * 110.36212 * 278.06319 * 16 5 4
38 38 H 1.07999 * 122.90571 * 359.95750 * 21 20 18
39 39 H 1.08999 * 109.47263 * 209.97222 * 24 23 22
40 40 H 1.09004 * 109.47178 * 329.98085 * 24 23 22
41 41 H 1.08999 * 115.54892 * 29.32899 * 25 24 23
42 42 H 1.09001 * 117.49832 * 359.97438 * 26 25 24
43 43 H 1.08996 * 117.49917 * 145.02122 * 26 25 24
44 44 H 1.09001 * 117.50506 * 252.50964 * 27 26 25
45 45 H 1.09003 * 117.49919 * 107.48659 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9029 1.0242 0.0000
4 6 2.0549 -0.7497 1.2427
5 6 3.2877 -1.5143 0.6923
6 1 3.4856 -2.4108 1.2799
7 7 4.4674 -0.6469 0.6493
8 6 5.7217 -1.1941 0.6985
9 1 5.8413 -2.2652 0.7687
10 6 6.8397 -0.3722 0.6583
11 7 6.6940 0.9331 0.5723
12 14 8.5506 -1.1186 0.7262
13 1 9.0201 -1.4067 -0.6529
14 1 9.4824 -0.1626 1.3767
15 1 8.5098 -2.3801 1.5088
16 6 2.8145 -1.8795 -0.7369
17 7 2.0300 -0.7140 -1.1840
18 6 1.8077 -0.3618 -2.4658
19 8 1.0875 0.5855 -2.7202
20 6 2.4336 -1.1205 -3.5540
21 6 2.3971 -0.8051 -4.8730
22 7 3.0409 -1.6455 -5.6436
23 6 3.6124 -2.6573 -5.0736
24 6 4.3896 -3.7264 -5.7974
25 6 5.8611 -3.3164 -5.8849
26 6 6.4469 -3.0802 -7.2784
27 6 6.8416 -4.3267 -6.4838
28 16 3.3613 -2.6088 -3.3833
29 1 -0.3633 0.4966 0.8996
30 1 -0.3633 0.5308 -0.8800
31 1 -0.3633 -1.0275 -0.0196
32 1 2.3530 -0.0461 2.0200
33 1 1.3052 -1.4461 1.6182
34 1 4.3601 0.3150 0.5859
35 1 7.4752 1.5075 0.5446
36 1 3.6716 -2.0338 -1.3924
37 1 2.1902 -2.7726 -0.7132
38 1 1.8840 0.0654 -5.2541
39 1 4.3064 -4.6673 -5.2534
40 1 3.9868 -3.8509 -6.8026
41 1 6.2222 -2.6850 -5.0732
42 1 5.7842 -3.2174 -8.1329
43 1 7.1936 -2.2933 -7.3837
44 1 7.8479 -4.3598 -6.0663
45 1 6.4384 -5.2835 -6.8155
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000989228198.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:26:42
Heat of formation + Delta-G solvation = 47.879274 kcal
Electronic energy + Delta-G solvation = -26866.411031 eV
Core-core repulsion = 23204.786369 eV
Total energy + Delta-G solvation = -3661.624662 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.141 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.14637 -39.46422 -37.65737 -37.18514 -34.06778 -32.36379 -31.46218 -31.23399
-28.65713 -28.38292 -25.66992 -24.65651 -23.80941 -22.71869 -22.50514 -20.97781
-20.70131 -19.80513 -18.60742 -18.07729 -17.35303 -16.41676 -16.25494 -15.73293
-15.18605 -15.03219 -14.70029 -14.51205 -14.08890 -13.77018 -13.57167 -13.50756
-13.31669 -13.21649 -12.81291 -12.59661 -12.32620 -12.03355 -11.81239 -11.70086
-11.65217 -11.43552 -11.22973 -11.05067 -10.88841 -10.75630 -10.56468 -10.38802
-10.14659 -10.09914 -9.84379 -9.80572 -9.44420 -9.26185 -9.09181 -8.82282
-8.29280 -7.13472 -5.89577 -3.20868 0.39098 1.32789 1.75281 2.60946
3.17342 3.34612 3.39818 3.42352 3.43843 3.62717 4.03063 4.46179
4.59026 4.67279 4.73898 4.81352 5.01265 5.02503 5.13817 5.24980
5.31756 5.41004 5.44246 5.47741 5.48956 5.51303 5.52840 5.60306
5.69639 5.76337 5.80409 5.89206 5.97317 6.05582 6.08984 6.12250
6.19468 6.32820 6.36403 6.47308 6.60997 6.68259 7.56972 7.68824
7.79994 8.26981 8.33802 9.39153 9.92908 10.27515 11.32103
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.007623 B = 0.005311 C = 0.003441
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3672.020631 B = 5270.870103 C = 8135.528114
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.141 3.859
3 H 0.077 0.923
4 C -0.139 4.139
5 C 0.174 3.826
6 H 0.079 0.921
7 N -0.710 5.710
8 C -0.251 4.251
9 H 0.074 0.926
10 C -0.006 4.006
11 N -0.926 5.926
12 Si 0.905 3.095
13 H -0.289 1.289
14 H -0.291 1.291
15 H -0.280 1.280
16 C 0.057 3.943
17 N -0.593 5.593
18 C 0.610 3.390
19 O -0.539 6.539
20 C -0.285 4.285
21 C 0.111 3.889
22 N -0.480 5.480
23 C 0.026 3.974
24 C -0.012 4.012
25 C -0.151 4.151
26 C -0.173 4.173
27 C -0.176 4.176
28 S 0.213 5.787
29 H 0.063 0.937
30 H 0.067 0.933
31 H 0.053 0.947
32 H 0.087 0.913
33 H 0.076 0.924
34 H 0.387 0.613
35 H 0.257 0.743
36 H 0.084 0.916
37 H 0.063 0.937
38 H 0.183 0.817
39 H 0.090 0.910
40 H 0.093 0.907
41 H 0.109 0.891
42 H 0.096 0.904
43 H 0.094 0.906
44 H 0.097 0.903
45 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.696 -10.947 -8.238 15.714
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.038 3.962
3 H 0.095 0.905
4 C -0.178 4.178
5 C 0.060 3.940
6 H 0.097 0.903
7 N -0.349 5.349
8 C -0.382 4.382
9 H 0.091 0.909
10 C -0.203 4.203
11 N -0.573 5.573
12 Si 0.736 3.264
13 H -0.216 1.216
14 H -0.217 1.217
15 H -0.205 1.205
16 C -0.071 4.071
17 N -0.325 5.325
18 C 0.397 3.603
19 O -0.419 6.419
20 C -0.409 4.409
21 C -0.047 4.047
22 N -0.194 5.194
23 C -0.247 4.247
24 C -0.053 4.053
25 C -0.171 4.171
26 C -0.210 4.210
27 C -0.213 4.213
28 S 0.472 5.528
29 H 0.082 0.918
30 H 0.086 0.914
31 H 0.072 0.928
32 H 0.106 0.894
33 H 0.095 0.905
34 H 0.221 0.779
35 H 0.067 0.933
36 H 0.102 0.898
37 H 0.081 0.919
38 H 0.200 0.800
39 H 0.108 0.892
40 H 0.112 0.888
41 H 0.127 0.873
42 H 0.114 0.886
43 H 0.112 0.888
44 H 0.115 0.885
45 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -7.533 -11.148 -8.150 15.730
hybrid contribution 0.678 0.868 -0.470 1.198
sum -6.855 -10.280 -8.619 15.065
Atomic orbital electron populations
1.22148 0.95107 1.01904 1.02670 1.21526 0.93803 0.96716 0.84173
0.90477 1.23115 0.98177 1.00113 0.96394 1.21293 0.87201 0.94693
0.90774 0.90337 1.42357 1.00076 1.05537 1.86924 1.19220 0.83065
0.92047 1.43875 0.90853 1.24772 0.97975 0.95325 1.02208 1.69663
1.29193 1.02186 1.56244 0.86230 0.84490 0.78049 0.77639 1.21621
1.21677 1.20529 1.23727 0.94475 0.87338 1.01604 1.48239 1.51330
1.28584 1.04360 1.16312 0.80513 0.82995 0.80469 1.90780 1.38865
1.29084 1.83159 1.25746 1.12274 1.03685 0.99224 1.22053 0.96424
0.98880 0.87373 1.66229 1.10917 1.03401 1.38821 1.27707 1.00680
0.98729 0.97591 1.19829 0.91393 0.93390 1.00654 1.22221 0.92643
1.03961 0.98298 1.23028 1.03600 0.99880 0.94500 1.22999 0.99893
0.94224 1.04184 1.84500 1.44813 1.19130 1.04370 0.91821 0.91353
0.92815 0.89444 0.90534 0.77924 0.93282 0.89815 0.91862 0.79976
0.89154 0.88824 0.87289 0.88579 0.88765 0.88498 0.88612
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.19 9.09 37.16 0.34 -1.85 16
2 C 0.14 2.24 3.47 -66.95 -0.23 2.01 16
3 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16
4 C -0.14 -2.03 6.08 -24.90 -0.15 -2.18 16
5 C 0.17 3.04 3.72 -65.78 -0.24 2.79 16
6 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16
7 N -0.71 -16.33 5.23 -51.35 -0.27 -16.60 16
8 C -0.25 -6.43 9.96 -15.06 -0.15 -6.58 16
9 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16
10 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16
11 N -0.93 -27.05 13.06 55.49 0.72 -26.32 16
12 Si 0.91 21.37 29.55 -169.99 -5.02 16.34 16
13 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16
14 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16
15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
16 C 0.06 0.92 5.34 -2.52 -0.01 0.91 16
17 N -0.59 -10.25 3.06 -164.53 -0.50 -10.76 16
18 C 0.61 11.35 7.63 -12.85 -0.10 11.25 16
19 O -0.54 -11.08 15.80 5.20 0.08 -11.00 16
20 C -0.28 -4.81 6.38 -37.09 -0.24 -5.05 16
21 C 0.11 1.79 11.10 -18.85 -0.21 1.58 16
22 N -0.48 -7.43 10.51 -11.50 -0.12 -7.55 16
23 C 0.03 0.36 6.59 -13.29 -0.09 0.27 16
24 C -0.01 -0.13 6.07 -27.89 -0.17 -0.30 16
25 C -0.15 -1.66 5.72 -90.62 -0.52 -2.18 16
26 C -0.17 -1.70 10.18 -26.73 -0.27 -1.97 16
27 C -0.18 -1.56 10.25 -26.74 -0.27 -1.84 16
28 S 0.21 3.04 18.75 -107.50 -2.02 1.02 16
29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
30 H 0.07 1.06 6.79 -51.93 -0.35 0.71 16
31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16
33 H 0.08 0.91 7.85 -51.93 -0.41 0.51 16
34 H 0.39 9.82 7.86 -40.82 -0.32 9.50 16
35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
36 H 0.08 1.49 4.97 -29.30 -0.15 1.35 16
37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
38 H 0.18 2.72 8.06 -52.49 -0.42 2.30 16
39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16
40 H 0.09 0.90 7.88 -51.93 -0.41 0.49 16
41 H 0.11 1.41 8.07 -51.93 -0.42 0.99 16
42 H 0.10 0.86 8.03 -51.93 -0.42 0.44 16
43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16
44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16
45 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16
LS Contribution 381.38 15.07 5.75 5.75
Total: -1.00 -31.08 381.38 -10.46 -41.54
By element:
Atomic # 1 Polarization: 17.62 SS G_CDS: -6.67 Total: 10.96 kcal
Atomic # 6 Polarization: -0.97 SS G_CDS: -2.42 Total: -3.38 kcal
Atomic # 7 Polarization: -61.06 SS G_CDS: -0.17 Total: -61.23 kcal
Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal
Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal
Atomic # 16 Polarization: 3.04 SS G_CDS: -2.02 Total: 1.02 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -31.08 -10.46 -41.54 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989228198.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.421 kcal
(2) G-P(sol) polarization free energy of solvation -31.082 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.339 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.879 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds