Wall clock time and date at job start Tue Mar 31 2020 19:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.99939 * 2 1 4 4 C 1.54327 * 109.88086 * 121.10241 * 2 1 3 5 5 C 1.55153 * 102.94402 * 141.61144 * 4 2 1 6 6 H 1.09000 * 111.00547 * 206.38376 * 5 4 2 7 7 N 1.46495 * 111.00721 * 82.56536 * 5 4 2 8 8 C 1.36932 * 120.00105 * 155.00204 * 7 5 4 9 9 H 1.08001 * 120.00138 * 0.02562 * 8 7 5 10 10 C 1.38817 * 120.00344 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00176 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47160 * 89.99938 * 12 10 8 14 14 H 1.48500 * 109.47433 * 210.00033 * 12 10 8 15 15 H 1.48505 * 109.47529 * 330.00013 * 12 10 8 16 16 C 1.54920 * 101.57954 * 324.49275 * 5 4 2 17 17 N 1.47023 * 109.87848 * 238.90610 * 2 1 3 18 18 C 1.34776 * 125.65087 * 61.62596 * 17 2 1 19 19 O 1.21688 * 119.99925 * 356.37034 * 18 17 2 20 20 C 1.46683 * 119.99952 * 176.37933 * 18 17 2 21 21 C 1.35667 * 126.12681 * 186.47584 * 20 18 17 22 22 N 1.30940 * 114.18806 * 179.78282 * 21 20 18 23 23 C 1.29439 * 117.36660 * 0.52259 * 22 21 20 24 24 C 1.50693 * 124.80671 * 179.72987 * 23 22 21 25 25 C 1.53002 * 109.47232 * 89.97596 * 24 23 22 26 26 C 1.53000 * 117.49982 * 243.62364 * 25 24 23 27 27 C 1.52994 * 59.99903 * 252.50663 * 26 25 24 28 28 S 1.70953 * 110.38636 * 359.70755 * 23 22 21 29 29 H 1.08992 * 109.46945 * 298.90089 * 1 2 3 30 30 H 1.08997 * 109.46833 * 58.90244 * 1 2 3 31 31 H 1.09001 * 109.47172 * 178.90504 * 1 2 3 32 32 H 1.09005 * 110.71228 * 259.97044 * 4 2 1 33 33 H 1.08994 * 110.72404 * 23.24323 * 4 2 1 34 34 H 0.97001 * 120.00368 * 334.99865 * 7 5 4 35 35 H 0.97001 * 120.00023 * 179.97438 * 11 10 8 36 36 H 1.09000 * 110.36344 * 155.84920 * 16 5 4 37 37 H 1.08993 * 110.36212 * 278.06319 * 16 5 4 38 38 H 1.07999 * 122.90571 * 359.95750 * 21 20 18 39 39 H 1.08999 * 109.47263 * 209.97222 * 24 23 22 40 40 H 1.09004 * 109.47178 * 329.98085 * 24 23 22 41 41 H 1.08999 * 115.54892 * 29.32899 * 25 24 23 42 42 H 1.09001 * 117.49832 * 359.97438 * 26 25 24 43 43 H 1.08996 * 117.49917 * 145.02122 * 26 25 24 44 44 H 1.09001 * 117.50506 * 252.50964 * 27 26 25 45 45 H 1.09003 * 117.49919 * 107.48659 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7497 1.2427 5 6 3.2877 -1.5143 0.6923 6 1 3.4856 -2.4108 1.2799 7 7 4.4674 -0.6469 0.6493 8 6 5.7217 -1.1941 0.6985 9 1 5.8413 -2.2652 0.7687 10 6 6.8397 -0.3722 0.6583 11 7 6.6940 0.9331 0.5723 12 14 8.5506 -1.1186 0.7262 13 1 9.0201 -1.4067 -0.6529 14 1 9.4824 -0.1626 1.3767 15 1 8.5098 -2.3801 1.5088 16 6 2.8145 -1.8795 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.8077 -0.3618 -2.4658 19 8 1.0875 0.5855 -2.7202 20 6 2.4336 -1.1205 -3.5540 21 6 2.3971 -0.8051 -4.8730 22 7 3.0409 -1.6455 -5.6436 23 6 3.6124 -2.6573 -5.0736 24 6 4.3896 -3.7264 -5.7974 25 6 5.8611 -3.3164 -5.8849 26 6 6.4469 -3.0802 -7.2784 27 6 6.8416 -4.3267 -6.4838 28 16 3.3613 -2.6088 -3.3833 29 1 -0.3633 0.4966 0.8996 30 1 -0.3633 0.5308 -0.8800 31 1 -0.3633 -1.0275 -0.0196 32 1 2.3530 -0.0461 2.0200 33 1 1.3052 -1.4461 1.6182 34 1 4.3601 0.3150 0.5859 35 1 7.4752 1.5075 0.5446 36 1 3.6716 -2.0338 -1.3924 37 1 2.1902 -2.7726 -0.7132 38 1 1.8840 0.0654 -5.2541 39 1 4.3064 -4.6673 -5.2534 40 1 3.9868 -3.8509 -6.8026 41 1 6.2222 -2.6850 -5.0732 42 1 5.7842 -3.2174 -8.1329 43 1 7.1936 -2.2933 -7.3837 44 1 7.8479 -4.3598 -6.0663 45 1 6.4384 -5.2835 -6.8155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989228198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:42 Heat of formation + Delta-G solvation = 47.879274 kcal Electronic energy + Delta-G solvation = -26866.411031 eV Core-core repulsion = 23204.786369 eV Total energy + Delta-G solvation = -3661.624662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.14637 -39.46422 -37.65737 -37.18514 -34.06778 -32.36379 -31.46218 -31.23399 -28.65713 -28.38292 -25.66992 -24.65651 -23.80941 -22.71869 -22.50514 -20.97781 -20.70131 -19.80513 -18.60742 -18.07729 -17.35303 -16.41676 -16.25494 -15.73293 -15.18605 -15.03219 -14.70029 -14.51205 -14.08890 -13.77018 -13.57167 -13.50756 -13.31669 -13.21649 -12.81291 -12.59661 -12.32620 -12.03355 -11.81239 -11.70086 -11.65217 -11.43552 -11.22973 -11.05067 -10.88841 -10.75630 -10.56468 -10.38802 -10.14659 -10.09914 -9.84379 -9.80572 -9.44420 -9.26185 -9.09181 -8.82282 -8.29280 -7.13472 -5.89577 -3.20868 0.39098 1.32789 1.75281 2.60946 3.17342 3.34612 3.39818 3.42352 3.43843 3.62717 4.03063 4.46179 4.59026 4.67279 4.73898 4.81352 5.01265 5.02503 5.13817 5.24980 5.31756 5.41004 5.44246 5.47741 5.48956 5.51303 5.52840 5.60306 5.69639 5.76337 5.80409 5.89206 5.97317 6.05582 6.08984 6.12250 6.19468 6.32820 6.36403 6.47308 6.60997 6.68259 7.56972 7.68824 7.79994 8.26981 8.33802 9.39153 9.92908 10.27515 11.32103 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007623 B = 0.005311 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3672.020631 B = 5270.870103 C = 8135.528114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.077 0.923 4 C -0.139 4.139 5 C 0.174 3.826 6 H 0.079 0.921 7 N -0.710 5.710 8 C -0.251 4.251 9 H 0.074 0.926 10 C -0.006 4.006 11 N -0.926 5.926 12 Si 0.905 3.095 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.280 1.280 16 C 0.057 3.943 17 N -0.593 5.593 18 C 0.610 3.390 19 O -0.539 6.539 20 C -0.285 4.285 21 C 0.111 3.889 22 N -0.480 5.480 23 C 0.026 3.974 24 C -0.012 4.012 25 C -0.151 4.151 26 C -0.173 4.173 27 C -0.176 4.176 28 S 0.213 5.787 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.183 0.817 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.696 -10.947 -8.238 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.095 0.905 4 C -0.178 4.178 5 C 0.060 3.940 6 H 0.097 0.903 7 N -0.349 5.349 8 C -0.382 4.382 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.573 5.573 12 Si 0.736 3.264 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.205 1.205 16 C -0.071 4.071 17 N -0.325 5.325 18 C 0.397 3.603 19 O -0.419 6.419 20 C -0.409 4.409 21 C -0.047 4.047 22 N -0.194 5.194 23 C -0.247 4.247 24 C -0.053 4.053 25 C -0.171 4.171 26 C -0.210 4.210 27 C -0.213 4.213 28 S 0.472 5.528 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.200 0.800 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.533 -11.148 -8.150 15.730 hybrid contribution 0.678 0.868 -0.470 1.198 sum -6.855 -10.280 -8.619 15.065 Atomic orbital electron populations 1.22148 0.95107 1.01904 1.02670 1.21526 0.93803 0.96716 0.84173 0.90477 1.23115 0.98177 1.00113 0.96394 1.21293 0.87201 0.94693 0.90774 0.90337 1.42357 1.00076 1.05537 1.86924 1.19220 0.83065 0.92047 1.43875 0.90853 1.24772 0.97975 0.95325 1.02208 1.69663 1.29193 1.02186 1.56244 0.86230 0.84490 0.78049 0.77639 1.21621 1.21677 1.20529 1.23727 0.94475 0.87338 1.01604 1.48239 1.51330 1.28584 1.04360 1.16312 0.80513 0.82995 0.80469 1.90780 1.38865 1.29084 1.83159 1.25746 1.12274 1.03685 0.99224 1.22053 0.96424 0.98880 0.87373 1.66229 1.10917 1.03401 1.38821 1.27707 1.00680 0.98729 0.97591 1.19829 0.91393 0.93390 1.00654 1.22221 0.92643 1.03961 0.98298 1.23028 1.03600 0.99880 0.94500 1.22999 0.99893 0.94224 1.04184 1.84500 1.44813 1.19130 1.04370 0.91821 0.91353 0.92815 0.89444 0.90534 0.77924 0.93282 0.89815 0.91862 0.79976 0.89154 0.88824 0.87289 0.88579 0.88765 0.88498 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.09 37.16 0.34 -1.85 16 2 C 0.14 2.24 3.47 -66.95 -0.23 2.01 16 3 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 4 C -0.14 -2.03 6.08 -24.90 -0.15 -2.18 16 5 C 0.17 3.04 3.72 -65.78 -0.24 2.79 16 6 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 7 N -0.71 -16.33 5.23 -51.35 -0.27 -16.60 16 8 C -0.25 -6.43 9.96 -15.06 -0.15 -6.58 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 11 N -0.93 -27.05 13.06 55.49 0.72 -26.32 16 12 Si 0.91 21.37 29.55 -169.99 -5.02 16.34 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 C 0.06 0.92 5.34 -2.52 -0.01 0.91 16 17 N -0.59 -10.25 3.06 -164.53 -0.50 -10.76 16 18 C 0.61 11.35 7.63 -12.85 -0.10 11.25 16 19 O -0.54 -11.08 15.80 5.20 0.08 -11.00 16 20 C -0.28 -4.81 6.38 -37.09 -0.24 -5.05 16 21 C 0.11 1.79 11.10 -18.85 -0.21 1.58 16 22 N -0.48 -7.43 10.51 -11.50 -0.12 -7.55 16 23 C 0.03 0.36 6.59 -13.29 -0.09 0.27 16 24 C -0.01 -0.13 6.07 -27.89 -0.17 -0.30 16 25 C -0.15 -1.66 5.72 -90.62 -0.52 -2.18 16 26 C -0.17 -1.70 10.18 -26.73 -0.27 -1.97 16 27 C -0.18 -1.56 10.25 -26.74 -0.27 -1.84 16 28 S 0.21 3.04 18.75 -107.50 -2.02 1.02 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.06 6.79 -51.93 -0.35 0.71 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 0.91 7.85 -51.93 -0.41 0.51 16 34 H 0.39 9.82 7.86 -40.82 -0.32 9.50 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 1.49 4.97 -29.30 -0.15 1.35 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.18 2.72 8.06 -52.49 -0.42 2.30 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.90 7.88 -51.93 -0.41 0.49 16 41 H 0.11 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.10 0.86 8.03 -51.93 -0.42 0.44 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -31.08 381.38 -10.46 -41.54 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.67 Total: 10.96 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.42 Total: -3.38 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.17 Total: -61.23 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.02 Total: 1.02 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.08 -10.46 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989228198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.421 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds