Wall clock time and date at job start Tue Mar 31 2020 19:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.99939 * 2 1 4 4 C 1.54327 * 109.88086 * 121.10241 * 2 1 3 5 5 C 1.55153 * 102.94402 * 141.61144 * 4 2 1 6 6 H 1.09000 * 111.00547 * 206.38376 * 5 4 2 7 7 N 1.46495 * 111.00721 * 82.56536 * 5 4 2 8 8 C 1.36932 * 120.00105 * 155.00204 * 7 5 4 9 9 H 1.08001 * 120.00138 * 0.02562 * 8 7 5 10 10 C 1.38817 * 120.00344 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00176 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47160 * 89.99938 * 12 10 8 14 14 H 1.48500 * 109.47433 * 210.00033 * 12 10 8 15 15 H 1.48505 * 109.47529 * 330.00013 * 12 10 8 16 16 C 1.54920 * 101.57954 * 324.49275 * 5 4 2 17 17 N 1.47023 * 109.87848 * 238.90610 * 2 1 3 18 18 C 1.34776 * 125.65087 * 61.62596 * 17 2 1 19 19 O 1.21688 * 119.99925 * 356.37034 * 18 17 2 20 20 C 1.46683 * 119.99952 * 176.37933 * 18 17 2 21 21 C 1.35667 * 126.12681 * 186.47584 * 20 18 17 22 22 N 1.30940 * 114.18806 * 179.78282 * 21 20 18 23 23 C 1.29439 * 117.36660 * 0.52259 * 22 21 20 24 24 C 1.50693 * 124.80671 * 179.72987 * 23 22 21 25 25 C 1.53002 * 109.47232 * 89.97596 * 24 23 22 26 26 C 1.53000 * 117.49982 * 243.62364 * 25 24 23 27 27 C 1.52994 * 59.99903 * 252.50663 * 26 25 24 28 28 S 1.70953 * 110.38636 * 359.70755 * 23 22 21 29 29 H 1.08992 * 109.46945 * 298.90089 * 1 2 3 30 30 H 1.08997 * 109.46833 * 58.90244 * 1 2 3 31 31 H 1.09001 * 109.47172 * 178.90504 * 1 2 3 32 32 H 1.09005 * 110.71228 * 259.97044 * 4 2 1 33 33 H 1.08994 * 110.72404 * 23.24323 * 4 2 1 34 34 H 0.97001 * 120.00368 * 334.99865 * 7 5 4 35 35 H 0.97001 * 120.00023 * 179.97438 * 11 10 8 36 36 H 1.09000 * 110.36344 * 155.84920 * 16 5 4 37 37 H 1.08993 * 110.36212 * 278.06319 * 16 5 4 38 38 H 1.07999 * 122.90571 * 359.95750 * 21 20 18 39 39 H 1.08999 * 109.47263 * 209.97222 * 24 23 22 40 40 H 1.09004 * 109.47178 * 329.98085 * 24 23 22 41 41 H 1.08999 * 115.54892 * 29.32899 * 25 24 23 42 42 H 1.09001 * 117.49832 * 359.97438 * 26 25 24 43 43 H 1.08996 * 117.49917 * 145.02122 * 26 25 24 44 44 H 1.09001 * 117.50506 * 252.50964 * 27 26 25 45 45 H 1.09003 * 117.49919 * 107.48659 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7497 1.2427 5 6 3.2877 -1.5143 0.6923 6 1 3.4856 -2.4108 1.2799 7 7 4.4674 -0.6469 0.6493 8 6 5.7217 -1.1941 0.6985 9 1 5.8413 -2.2652 0.7687 10 6 6.8397 -0.3722 0.6583 11 7 6.6940 0.9331 0.5723 12 14 8.5506 -1.1186 0.7262 13 1 9.0201 -1.4067 -0.6529 14 1 9.4824 -0.1626 1.3767 15 1 8.5098 -2.3801 1.5088 16 6 2.8145 -1.8795 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.8077 -0.3618 -2.4658 19 8 1.0875 0.5855 -2.7202 20 6 2.4336 -1.1205 -3.5540 21 6 2.3971 -0.8051 -4.8730 22 7 3.0409 -1.6455 -5.6436 23 6 3.6124 -2.6573 -5.0736 24 6 4.3896 -3.7264 -5.7974 25 6 5.8611 -3.3164 -5.8849 26 6 6.4469 -3.0802 -7.2784 27 6 6.8416 -4.3267 -6.4838 28 16 3.3613 -2.6088 -3.3833 29 1 -0.3633 0.4966 0.8996 30 1 -0.3633 0.5308 -0.8800 31 1 -0.3633 -1.0275 -0.0196 32 1 2.3530 -0.0461 2.0200 33 1 1.3052 -1.4461 1.6182 34 1 4.3601 0.3150 0.5859 35 1 7.4752 1.5075 0.5446 36 1 3.6716 -2.0338 -1.3924 37 1 2.1902 -2.7726 -0.7132 38 1 1.8840 0.0654 -5.2541 39 1 4.3064 -4.6673 -5.2534 40 1 3.9868 -3.8509 -6.8026 41 1 6.2222 -2.6850 -5.0732 42 1 5.7842 -3.2174 -8.1329 43 1 7.1936 -2.2933 -7.3837 44 1 7.8479 -4.3598 -6.0663 45 1 6.4384 -5.2835 -6.8155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989228198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:41 Heat of formation + Delta-G solvation = 29.008134 kcal Electronic energy + Delta-G solvation = -26867.229345 eV Core-core repulsion = 23204.786369 eV Total energy + Delta-G solvation = -3662.442976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46831 -40.68071 -38.79600 -38.29858 -35.83104 -33.60747 -33.16102 -32.35328 -30.21059 -29.58970 -26.90642 -25.89450 -25.60270 -24.00057 -23.22365 -22.17261 -21.73638 -21.10926 -19.79150 -19.43481 -19.17021 -17.75776 -17.56866 -16.82960 -16.54644 -16.29445 -16.01546 -15.68175 -15.47751 -15.41814 -14.93265 -14.69574 -14.49318 -14.35463 -14.23197 -13.64578 -13.54284 -13.34670 -13.19066 -12.91774 -12.73853 -12.66784 -12.55791 -12.33978 -12.32042 -12.22381 -12.11443 -11.66440 -11.53041 -11.40087 -11.24066 -11.00436 -10.90644 -10.62763 -10.42928 -10.07272 -9.63208 -9.01394 -7.94024 -5.23377 -0.81341 0.15608 0.57137 1.35205 1.48397 1.48626 1.57227 1.84691 2.10078 2.55873 2.84761 3.01097 3.34901 3.40992 3.76760 3.79902 3.83821 3.87016 3.90049 4.00500 4.08675 4.13929 4.20145 4.33310 4.42387 4.50465 4.61715 4.64424 4.66937 4.71143 4.72037 4.81286 4.88437 5.00666 5.05562 5.07707 5.15137 5.18908 5.24910 5.28247 5.32278 5.43327 5.55899 6.26152 6.36260 6.57338 6.93896 7.33399 8.06924 8.29167 9.29345 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007623 B = 0.005311 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3672.020631 B = 5270.870103 C = 8135.528114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.134 3.866 3 H 0.045 0.955 4 C -0.122 4.122 5 C 0.162 3.838 6 H 0.099 0.901 7 N -0.725 5.725 8 C -0.234 4.234 9 H 0.089 0.911 10 C -0.074 4.074 11 N -0.971 5.971 12 Si 0.964 3.036 13 H -0.292 1.292 14 H -0.303 1.303 15 H -0.260 1.260 16 C 0.061 3.939 17 N -0.595 5.595 18 C 0.601 3.399 19 O -0.571 6.571 20 C -0.319 4.319 21 C 0.111 3.889 22 N -0.498 5.498 23 C 0.036 3.964 24 C -0.010 4.010 25 C -0.171 4.171 26 C -0.179 4.179 27 C -0.156 4.156 28 S 0.240 5.760 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.370 0.630 35 H 0.247 0.753 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.184 0.816 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.147 -14.505 -8.191 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.031 3.969 3 H 0.063 0.937 4 C -0.161 4.161 5 C 0.052 3.948 6 H 0.117 0.883 7 N -0.363 5.363 8 C -0.365 4.365 9 H 0.107 0.893 10 C -0.266 4.266 11 N -0.622 5.622 12 Si 0.794 3.206 13 H -0.219 1.219 14 H -0.231 1.231 15 H -0.184 1.184 16 C -0.066 4.066 17 N -0.326 5.326 18 C 0.390 3.610 19 O -0.454 6.454 20 C -0.443 4.443 21 C -0.049 4.049 22 N -0.212 5.212 23 C -0.237 4.237 24 C -0.051 4.051 25 C -0.191 4.191 26 C -0.216 4.216 27 C -0.193 4.193 28 S 0.500 5.500 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.135 0.865 34 H 0.201 0.799 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.201 0.799 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.116 0.884 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.015 -14.788 -8.072 18.657 hybrid contribution 0.782 1.909 -0.527 2.130 sum -7.233 -12.879 -8.599 17.091 Atomic orbital electron populations 1.22045 0.93011 1.02901 1.02673 1.21643 0.95445 0.95332 0.84450 0.93670 1.23054 0.97576 1.00179 0.95289 1.21636 0.86395 0.94906 0.91886 0.88333 1.42567 1.01165 1.05382 1.87140 1.19689 0.84011 0.92624 1.40198 0.89285 1.25522 1.01532 0.95663 1.03922 1.69834 1.29285 1.03609 1.59485 0.85274 0.80349 0.77668 0.77341 1.21950 1.23050 1.18417 1.23693 0.94665 0.88242 0.99984 1.48356 1.51077 1.28884 1.04322 1.16611 0.80334 0.82836 0.81218 1.90745 1.40410 1.30502 1.83736 1.25702 1.14098 1.05537 0.98997 1.22187 0.96144 0.99069 0.87457 1.66302 1.11896 1.04103 1.38913 1.28351 0.99251 0.98497 0.97578 1.20042 0.90424 0.93134 1.01458 1.22146 0.93337 1.05413 0.98190 1.23112 1.03655 1.00543 0.94287 1.23096 0.99314 0.94573 1.02304 1.84217 1.43880 1.17261 1.04635 0.89521 0.93756 0.91089 0.90057 0.86478 0.79883 0.94376 0.91306 0.88066 0.79903 0.86481 0.87386 0.89919 0.87485 0.89495 0.88391 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.09 71.98 0.65 -3.18 16 2 C 0.13 4.19 3.47 45.34 0.16 4.35 16 3 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.12 -3.29 6.08 31.78 0.19 -3.10 16 5 C 0.16 5.33 3.72 46.39 0.17 5.50 16 6 H 0.10 2.89 8.09 -2.39 -0.02 2.87 16 7 N -0.72 -33.12 5.23 -316.37 -1.66 -34.77 16 8 C -0.23 -11.77 9.96 84.04 0.84 -10.94 16 9 H 0.09 4.13 7.83 -2.91 -0.02 4.11 16 10 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 11 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 12 Si 0.96 44.12 29.55 68.60 2.03 46.15 16 13 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 14 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 15 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 16 C 0.06 1.86 5.34 86.86 0.46 2.32 16 17 N -0.60 -20.31 3.06 -792.67 -2.43 -22.73 16 18 C 0.60 22.83 7.63 86.45 0.66 23.49 16 19 O -0.57 -24.46 15.80 -4.31 -0.07 -24.53 16 20 C -0.32 -10.85 6.38 23.88 0.15 -10.70 16 21 C 0.11 3.62 11.10 84.23 0.93 4.56 16 22 N -0.50 -15.19 10.51 -190.30 -2.00 -17.19 16 23 C 0.04 0.95 6.59 88.46 0.58 1.53 16 24 C -0.01 -0.19 6.07 29.85 0.18 -0.01 16 25 C -0.17 -3.46 5.72 -10.79 -0.06 -3.52 16 26 C -0.18 -3.21 10.18 30.59 0.31 -2.90 16 27 C -0.16 -2.35 10.25 30.59 0.31 -2.04 16 28 S 0.24 6.55 18.75 -56.49 -1.06 5.49 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.37 6.79 -2.39 -0.02 1.35 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.12 2.25 7.85 -2.39 -0.02 2.24 16 34 H 0.37 19.25 7.86 -92.71 -0.73 18.52 16 35 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.07 2.36 4.97 -16.77 -0.08 2.27 16 37 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.18 5.73 8.06 -2.91 -0.02 5.71 16 39 H 0.12 1.52 8.14 -2.39 -0.02 1.51 16 40 H 0.11 1.73 7.88 -2.38 -0.02 1.71 16 41 H 0.08 2.11 8.07 -2.39 -0.02 2.10 16 42 H 0.11 1.67 8.03 -2.39 -0.02 1.65 16 43 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 45 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -69.88 381.38 1.32 -68.56 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: 0.21 Total: 35.53 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 6.02 Total: 1.77 kcal Atomic # 7 Polarization: -127.17 SS G_CDS: -5.80 Total: -132.97 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.07 Total: -24.53 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 6.55 SS G_CDS: -1.06 Total: 5.49 kcal Total: -69.88 1.32 -68.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989228198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.568 kcal (2) G-P(sol) polarization free energy of solvation -69.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds