Wall clock time and date at job start Tue Mar 31 2020 19:26:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08997 * 109.99939 * 2 1
4 4 C 1.54327 * 109.88086 * 121.10241 * 2 1 3
5 5 C 1.55153 * 102.94402 * 141.61144 * 4 2 1
6 6 H 1.09000 * 111.00547 * 206.38376 * 5 4 2
7 7 N 1.46495 * 111.00721 * 82.56536 * 5 4 2
8 8 C 1.36932 * 120.00105 * 155.00204 * 7 5 4
9 9 H 1.08001 * 120.00138 * 0.02562 * 8 7 5
10 10 C 1.38817 * 120.00344 * 180.02562 * 8 7 5
11 11 N 1.31616 * 119.99773 * 359.97438 * 10 8 7
12 12 Si 1.86795 * 120.00176 * 179.97438 * 10 8 7
13 13 H 1.48504 * 109.47160 * 89.99938 * 12 10 8
14 14 H 1.48500 * 109.47433 * 210.00033 * 12 10 8
15 15 H 1.48505 * 109.47529 * 330.00013 * 12 10 8
16 16 C 1.54920 * 101.57954 * 324.49275 * 5 4 2
17 17 N 1.47023 * 109.87848 * 238.90610 * 2 1 3
18 18 C 1.34776 * 125.65087 * 61.62596 * 17 2 1
19 19 O 1.21688 * 119.99925 * 356.37034 * 18 17 2
20 20 C 1.46683 * 119.99952 * 176.37933 * 18 17 2
21 21 C 1.35667 * 126.12681 * 186.47584 * 20 18 17
22 22 N 1.30940 * 114.18806 * 179.78282 * 21 20 18
23 23 C 1.29439 * 117.36660 * 0.52259 * 22 21 20
24 24 C 1.50693 * 124.80671 * 179.72987 * 23 22 21
25 25 C 1.53002 * 109.47232 * 89.97596 * 24 23 22
26 26 C 1.53000 * 117.49982 * 243.62364 * 25 24 23
27 27 C 1.52994 * 59.99903 * 252.50663 * 26 25 24
28 28 S 1.70953 * 110.38636 * 359.70755 * 23 22 21
29 29 H 1.08992 * 109.46945 * 298.90089 * 1 2 3
30 30 H 1.08997 * 109.46833 * 58.90244 * 1 2 3
31 31 H 1.09001 * 109.47172 * 178.90504 * 1 2 3
32 32 H 1.09005 * 110.71228 * 259.97044 * 4 2 1
33 33 H 1.08994 * 110.72404 * 23.24323 * 4 2 1
34 34 H 0.97001 * 120.00368 * 334.99865 * 7 5 4
35 35 H 0.97001 * 120.00023 * 179.97438 * 11 10 8
36 36 H 1.09000 * 110.36344 * 155.84920 * 16 5 4
37 37 H 1.08993 * 110.36212 * 278.06319 * 16 5 4
38 38 H 1.07999 * 122.90571 * 359.95750 * 21 20 18
39 39 H 1.08999 * 109.47263 * 209.97222 * 24 23 22
40 40 H 1.09004 * 109.47178 * 329.98085 * 24 23 22
41 41 H 1.08999 * 115.54892 * 29.32899 * 25 24 23
42 42 H 1.09001 * 117.49832 * 359.97438 * 26 25 24
43 43 H 1.08996 * 117.49917 * 145.02122 * 26 25 24
44 44 H 1.09001 * 117.50506 * 252.50964 * 27 26 25
45 45 H 1.09003 * 117.49919 * 107.48659 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9029 1.0242 0.0000
4 6 2.0549 -0.7497 1.2427
5 6 3.2877 -1.5143 0.6923
6 1 3.4856 -2.4108 1.2799
7 7 4.4674 -0.6469 0.6493
8 6 5.7217 -1.1941 0.6985
9 1 5.8413 -2.2652 0.7687
10 6 6.8397 -0.3722 0.6583
11 7 6.6940 0.9331 0.5723
12 14 8.5506 -1.1186 0.7262
13 1 9.0201 -1.4067 -0.6529
14 1 9.4824 -0.1626 1.3767
15 1 8.5098 -2.3801 1.5088
16 6 2.8145 -1.8795 -0.7369
17 7 2.0300 -0.7140 -1.1840
18 6 1.8077 -0.3618 -2.4658
19 8 1.0875 0.5855 -2.7202
20 6 2.4336 -1.1205 -3.5540
21 6 2.3971 -0.8051 -4.8730
22 7 3.0409 -1.6455 -5.6436
23 6 3.6124 -2.6573 -5.0736
24 6 4.3896 -3.7264 -5.7974
25 6 5.8611 -3.3164 -5.8849
26 6 6.4469 -3.0802 -7.2784
27 6 6.8416 -4.3267 -6.4838
28 16 3.3613 -2.6088 -3.3833
29 1 -0.3633 0.4966 0.8996
30 1 -0.3633 0.5308 -0.8800
31 1 -0.3633 -1.0275 -0.0196
32 1 2.3530 -0.0461 2.0200
33 1 1.3052 -1.4461 1.6182
34 1 4.3601 0.3150 0.5859
35 1 7.4752 1.5075 0.5446
36 1 3.6716 -2.0338 -1.3924
37 1 2.1902 -2.7726 -0.7132
38 1 1.8840 0.0654 -5.2541
39 1 4.3064 -4.6673 -5.2534
40 1 3.9868 -3.8509 -6.8026
41 1 6.2222 -2.6850 -5.0732
42 1 5.7842 -3.2174 -8.1329
43 1 7.1936 -2.2933 -7.3837
44 1 7.8479 -4.3598 -6.0663
45 1 6.4384 -5.2835 -6.8155
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000989228198.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:26:41
Heat of formation + Delta-G solvation = 29.008134 kcal
Electronic energy + Delta-G solvation = -26867.229345 eV
Core-core repulsion = 23204.786369 eV
Total energy + Delta-G solvation = -3662.442976 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.141 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.46831 -40.68071 -38.79600 -38.29858 -35.83104 -33.60747 -33.16102 -32.35328
-30.21059 -29.58970 -26.90642 -25.89450 -25.60270 -24.00057 -23.22365 -22.17261
-21.73638 -21.10926 -19.79150 -19.43481 -19.17021 -17.75776 -17.56866 -16.82960
-16.54644 -16.29445 -16.01546 -15.68175 -15.47751 -15.41814 -14.93265 -14.69574
-14.49318 -14.35463 -14.23197 -13.64578 -13.54284 -13.34670 -13.19066 -12.91774
-12.73853 -12.66784 -12.55791 -12.33978 -12.32042 -12.22381 -12.11443 -11.66440
-11.53041 -11.40087 -11.24066 -11.00436 -10.90644 -10.62763 -10.42928 -10.07272
-9.63208 -9.01394 -7.94024 -5.23377 -0.81341 0.15608 0.57137 1.35205
1.48397 1.48626 1.57227 1.84691 2.10078 2.55873 2.84761 3.01097
3.34901 3.40992 3.76760 3.79902 3.83821 3.87016 3.90049 4.00500
4.08675 4.13929 4.20145 4.33310 4.42387 4.50465 4.61715 4.64424
4.66937 4.71143 4.72037 4.81286 4.88437 5.00666 5.05562 5.07707
5.15137 5.18908 5.24910 5.28247 5.32278 5.43327 5.55899 6.26152
6.36260 6.57338 6.93896 7.33399 8.06924 8.29167 9.29345
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.007623 B = 0.005311 C = 0.003441
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3672.020631 B = 5270.870103 C = 8135.528114
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.134 3.866
3 H 0.045 0.955
4 C -0.122 4.122
5 C 0.162 3.838
6 H 0.099 0.901
7 N -0.725 5.725
8 C -0.234 4.234
9 H 0.089 0.911
10 C -0.074 4.074
11 N -0.971 5.971
12 Si 0.964 3.036
13 H -0.292 1.292
14 H -0.303 1.303
15 H -0.260 1.260
16 C 0.061 3.939
17 N -0.595 5.595
18 C 0.601 3.399
19 O -0.571 6.571
20 C -0.319 4.319
21 C 0.111 3.889
22 N -0.498 5.498
23 C 0.036 3.964
24 C -0.010 4.010
25 C -0.171 4.171
26 C -0.179 4.179
27 C -0.156 4.156
28 S 0.240 5.760
29 H 0.086 0.914
30 H 0.043 0.957
31 H 0.070 0.930
32 H 0.081 0.919
33 H 0.117 0.883
34 H 0.370 0.630
35 H 0.247 0.753
36 H 0.069 0.931
37 H 0.101 0.899
38 H 0.184 0.816
39 H 0.117 0.883
40 H 0.108 0.892
41 H 0.082 0.918
42 H 0.107 0.893
43 H 0.086 0.914
44 H 0.098 0.902
45 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.147 -14.505 -8.191 18.544
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.031 3.969
3 H 0.063 0.937
4 C -0.161 4.161
5 C 0.052 3.948
6 H 0.117 0.883
7 N -0.363 5.363
8 C -0.365 4.365
9 H 0.107 0.893
10 C -0.266 4.266
11 N -0.622 5.622
12 Si 0.794 3.206
13 H -0.219 1.219
14 H -0.231 1.231
15 H -0.184 1.184
16 C -0.066 4.066
17 N -0.326 5.326
18 C 0.390 3.610
19 O -0.454 6.454
20 C -0.443 4.443
21 C -0.049 4.049
22 N -0.212 5.212
23 C -0.237 4.237
24 C -0.051 4.051
25 C -0.191 4.191
26 C -0.216 4.216
27 C -0.193 4.193
28 S 0.500 5.500
29 H 0.105 0.895
30 H 0.062 0.938
31 H 0.089 0.911
32 H 0.099 0.901
33 H 0.135 0.865
34 H 0.201 0.799
35 H 0.056 0.944
36 H 0.087 0.913
37 H 0.119 0.881
38 H 0.201 0.799
39 H 0.135 0.865
40 H 0.126 0.874
41 H 0.101 0.899
42 H 0.125 0.875
43 H 0.105 0.895
44 H 0.116 0.884
45 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -8.015 -14.788 -8.072 18.657
hybrid contribution 0.782 1.909 -0.527 2.130
sum -7.233 -12.879 -8.599 17.091
Atomic orbital electron populations
1.22045 0.93011 1.02901 1.02673 1.21643 0.95445 0.95332 0.84450
0.93670 1.23054 0.97576 1.00179 0.95289 1.21636 0.86395 0.94906
0.91886 0.88333 1.42567 1.01165 1.05382 1.87140 1.19689 0.84011
0.92624 1.40198 0.89285 1.25522 1.01532 0.95663 1.03922 1.69834
1.29285 1.03609 1.59485 0.85274 0.80349 0.77668 0.77341 1.21950
1.23050 1.18417 1.23693 0.94665 0.88242 0.99984 1.48356 1.51077
1.28884 1.04322 1.16611 0.80334 0.82836 0.81218 1.90745 1.40410
1.30502 1.83736 1.25702 1.14098 1.05537 0.98997 1.22187 0.96144
0.99069 0.87457 1.66302 1.11896 1.04103 1.38913 1.28351 0.99251
0.98497 0.97578 1.20042 0.90424 0.93134 1.01458 1.22146 0.93337
1.05413 0.98190 1.23112 1.03655 1.00543 0.94287 1.23096 0.99314
0.94573 1.02304 1.84217 1.43880 1.17261 1.04635 0.89521 0.93756
0.91089 0.90057 0.86478 0.79883 0.94376 0.91306 0.88066 0.79903
0.86481 0.87386 0.89919 0.87485 0.89495 0.88391 0.86308
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.83 9.09 71.98 0.65 -3.18 16
2 C 0.13 4.19 3.47 45.34 0.16 4.35 16
3 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
4 C -0.12 -3.29 6.08 31.78 0.19 -3.10 16
5 C 0.16 5.33 3.72 46.39 0.17 5.50 16
6 H 0.10 2.89 8.09 -2.39 -0.02 2.87 16
7 N -0.72 -33.12 5.23 -316.37 -1.66 -34.77 16
8 C -0.23 -11.77 9.96 84.04 0.84 -10.94 16
9 H 0.09 4.13 7.83 -2.91 -0.02 4.11 16
10 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16
11 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16
12 Si 0.96 44.12 29.55 68.60 2.03 46.15 16
13 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16
14 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16
15 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16
16 C 0.06 1.86 5.34 86.86 0.46 2.32 16
17 N -0.60 -20.31 3.06 -792.67 -2.43 -22.73 16
18 C 0.60 22.83 7.63 86.45 0.66 23.49 16
19 O -0.57 -24.46 15.80 -4.31 -0.07 -24.53 16
20 C -0.32 -10.85 6.38 23.88 0.15 -10.70 16
21 C 0.11 3.62 11.10 84.23 0.93 4.56 16
22 N -0.50 -15.19 10.51 -190.30 -2.00 -17.19 16
23 C 0.04 0.95 6.59 88.46 0.58 1.53 16
24 C -0.01 -0.19 6.07 29.85 0.18 -0.01 16
25 C -0.17 -3.46 5.72 -10.79 -0.06 -3.52 16
26 C -0.18 -3.21 10.18 30.59 0.31 -2.90 16
27 C -0.16 -2.35 10.25 30.59 0.31 -2.04 16
28 S 0.24 6.55 18.75 -56.49 -1.06 5.49 16
29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16
30 H 0.04 1.37 6.79 -2.39 -0.02 1.35 16
31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16
32 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16
33 H 0.12 2.25 7.85 -2.39 -0.02 2.24 16
34 H 0.37 19.25 7.86 -92.71 -0.73 18.52 16
35 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16
36 H 0.07 2.36 4.97 -16.77 -0.08 2.27 16
37 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16
38 H 0.18 5.73 8.06 -2.91 -0.02 5.71 16
39 H 0.12 1.52 8.14 -2.39 -0.02 1.51 16
40 H 0.11 1.73 7.88 -2.38 -0.02 1.71 16
41 H 0.08 2.11 8.07 -2.39 -0.02 2.10 16
42 H 0.11 1.67 8.03 -2.39 -0.02 1.65 16
43 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16
44 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16
45 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16
Total: -1.00 -69.88 381.38 1.32 -68.56
By element:
Atomic # 1 Polarization: 35.32 SS G_CDS: 0.21 Total: 35.53 kcal
Atomic # 6 Polarization: -4.25 SS G_CDS: 6.02 Total: 1.77 kcal
Atomic # 7 Polarization: -127.17 SS G_CDS: -5.80 Total: -132.97 kcal
Atomic # 8 Polarization: -24.46 SS G_CDS: -0.07 Total: -24.53 kcal
Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal
Atomic # 16 Polarization: 6.55 SS G_CDS: -1.06 Total: 5.49 kcal
Total: -69.88 1.32 -68.56 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989228198.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.568 kcal
(2) G-P(sol) polarization free energy of solvation -69.883 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.686 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.560 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.008 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds