Wall clock time and date at job start Tue Mar 31 2020 19:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.99747 * 2 1 4 4 C 1.54336 * 109.98845 * 238.96399 * 2 1 3 5 5 C 1.55157 * 103.01982 * 218.66698 * 4 2 1 6 6 H 1.09002 * 111.00464 * 277.23149 * 5 4 2 7 7 N 1.46497 * 111.00428 * 153.38105 * 5 4 2 8 8 C 1.36939 * 119.99751 * 161.34921 * 7 5 4 9 9 H 1.08003 * 120.00400 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99975 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99844 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00011 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47166 * 59.99897 * 12 10 8 14 14 H 1.48502 * 109.47074 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47230 * 299.99833 * 12 10 8 16 16 C 1.54911 * 101.58123 * 35.30500 * 5 4 2 17 17 N 1.47017 * 109.88343 * 121.09652 * 2 1 3 18 18 C 1.34775 * 125.64874 * 298.39232 * 17 2 1 19 19 O 1.21688 * 120.00158 * 3.32951 * 18 17 2 20 20 C 1.46685 * 120.00084 * 183.32486 * 18 17 2 21 21 C 1.35657 * 126.13105 * 173.52783 * 20 18 17 22 22 N 1.30946 * 114.19125 * 179.73139 * 21 20 18 23 23 C 1.29420 * 117.36232 * 0.51689 * 22 21 20 24 24 C 1.50708 * 124.80471 * 179.75971 * 23 22 21 25 25 C 1.53008 * 109.46438 * 89.70273 * 24 23 22 26 26 C 1.52997 * 117.49591 * 116.25488 * 25 24 23 27 27 C 1.53000 * 117.49615 * 184.91403 * 25 24 23 28 28 S 1.70953 * 110.39438 * 359.50396 * 23 22 21 29 29 H 1.09003 * 109.46985 * 300.35822 * 1 2 3 30 30 H 1.09005 * 109.47052 * 60.35492 * 1 2 3 31 31 H 1.08995 * 109.47068 * 180.36050 * 1 2 3 32 32 H 1.09000 * 110.85182 * 100.20051 * 4 2 1 33 33 H 1.09000 * 110.66974 * 337.04570 * 4 2 1 34 34 H 0.96991 * 120.00355 * 341.34982 * 7 5 4 35 35 H 0.96993 * 119.99888 * 179.97438 * 11 10 8 36 36 H 1.08998 * 110.36625 * 204.15398 * 16 5 4 37 37 H 1.08996 * 110.45725 * 81.88181 * 16 5 4 38 38 H 1.08002 * 122.90516 * 0.02562 * 21 20 18 39 39 H 1.09001 * 109.46853 * 329.70591 * 24 23 22 40 40 H 1.08994 * 109.47541 * 209.70202 * 24 23 22 41 41 H 1.08995 * 115.55064 * 330.58573 * 25 24 23 42 42 H 1.08998 * 117.49622 * 215.00014 * 26 25 24 43 43 H 1.08999 * 117.50222 * 0.02562 * 26 25 24 44 44 H 1.08997 * 117.49761 * 359.97438 * 27 25 24 45 45 H 1.09003 * 117.50021 * 144.97273 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 6 3.2863 -1.5184 -0.6916 6 1 4.1670 -0.8769 -0.6580 7 7 3.5474 -2.7243 -1.4814 8 6 4.7733 -3.3313 -1.4192 9 1 5.5476 -2.9214 -0.7875 10 6 5.0210 -4.4737 -2.1680 11 7 4.0773 -4.9736 -2.9375 12 14 6.6930 -5.3022 -2.0826 13 1 6.9660 -5.7232 -0.6850 14 1 6.7007 -6.4939 -2.9686 15 1 7.7413 -4.3484 -2.5260 16 6 2.8099 -1.8825 0.7368 17 7 2.0301 -0.7141 1.1839 18 6 1.8075 -0.3620 2.4656 19 8 1.0914 0.5884 2.7201 20 6 2.4283 -1.1246 3.5541 21 6 2.3914 -0.8105 4.8732 22 7 3.0217 -1.6600 5.6450 23 6 3.5996 -2.6672 5.0736 24 6 4.3729 -3.7394 5.7973 25 6 3.4246 -4.8735 6.1919 26 6 3.6676 -6.2478 5.5650 27 6 3.9976 -6.0102 7.0408 28 16 3.3558 -2.6131 3.3824 29 1 -0.3633 0.5194 0.8868 30 1 -0.3633 0.5083 -0.8932 31 1 -0.3633 -1.0276 0.0065 32 1 2.3598 -0.0450 -2.0192 33 1 1.3066 -1.4405 -1.6226 34 1 2.8521 -3.0927 -2.0484 35 1 4.2505 -5.7715 -3.4610 36 1 3.6655 -2.0412 1.3931 37 1 2.1806 -2.7722 0.7133 38 1 1.8818 0.0622 5.2545 39 1 4.8274 -3.3173 6.6935 40 1 5.1529 -4.1290 5.1433 41 1 2.3912 -4.5798 6.3757 42 1 2.7940 -6.8582 5.3364 43 1 4.5032 -6.3442 4.8718 44 1 5.0501 -5.9503 7.3177 45 1 3.3412 -6.4640 7.7833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989228199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:45 Heat of formation + Delta-G solvation = 47.299772 kcal Electronic energy + Delta-G solvation = -26514.593888 eV Core-core repulsion = 22852.944097 eV Total energy + Delta-G solvation = -3661.649791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.26354 -39.55748 -37.73975 -37.27593 -34.30285 -32.46787 -31.55286 -31.31063 -28.71701 -28.37932 -25.67295 -24.75942 -23.93481 -22.72104 -22.51093 -21.07679 -20.59720 -20.10067 -18.67090 -18.19803 -17.36720 -16.58545 -16.29728 -15.87726 -15.44860 -15.07276 -14.59542 -14.58821 -14.19546 -13.83598 -13.66068 -13.61082 -13.40015 -13.07212 -12.89934 -12.71176 -12.47107 -12.21745 -11.84407 -11.78429 -11.72658 -11.47444 -11.24554 -11.09464 -10.90037 -10.74433 -10.63715 -10.45074 -10.30701 -10.15905 -9.94310 -9.83749 -9.51864 -9.36724 -9.09479 -8.95140 -8.43015 -7.19858 -5.93639 -3.25341 0.27016 1.23711 1.67110 2.47245 3.03418 3.26482 3.33598 3.39168 3.39963 3.50327 4.00783 4.41295 4.48506 4.59062 4.62159 4.74376 4.87930 4.96288 5.04027 5.15355 5.26777 5.30484 5.38864 5.39884 5.44760 5.44974 5.52913 5.58978 5.69346 5.69932 5.73217 5.89648 5.93586 5.96735 5.99714 6.07536 6.09105 6.25266 6.33184 6.36270 6.54124 6.71071 7.53797 7.56039 7.66566 8.17304 8.23631 9.35706 9.87445 10.22853 11.27980 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007510 B = 0.004784 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3727.312200 B = 5851.902469 C = 9015.784019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.178 3.822 6 H 0.067 0.933 7 N -0.709 5.709 8 C -0.253 4.253 9 H 0.072 0.928 10 C -0.004 4.004 11 N -0.927 5.927 12 Si 0.907 3.093 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.064 3.936 17 N -0.605 5.605 18 C 0.608 3.392 19 O -0.538 6.538 20 C -0.297 4.297 21 C 0.114 3.886 22 N -0.484 5.484 23 C 0.028 3.972 24 C -0.015 4.015 25 C -0.150 4.150 26 C -0.178 4.178 27 C -0.174 4.174 28 S 0.226 5.774 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.388 0.612 35 H 0.258 0.742 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.184 0.816 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.486 2.969 13.960 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.094 0.906 4 C -0.175 4.175 5 C 0.065 3.935 6 H 0.085 0.915 7 N -0.349 5.349 8 C -0.384 4.384 9 H 0.090 0.910 10 C -0.201 4.201 11 N -0.574 5.574 12 Si 0.737 3.263 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.063 4.063 17 N -0.338 5.338 18 C 0.395 3.605 19 O -0.418 6.418 20 C -0.422 4.422 21 C -0.045 4.045 22 N -0.198 5.198 23 C -0.245 4.245 24 C -0.056 4.056 25 C -0.170 4.170 26 C -0.215 4.215 27 C -0.211 4.211 28 S 0.485 5.515 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.223 0.777 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.200 0.800 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.125 0.875 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.307 2.751 13.880 14.337 hybrid contribution 0.221 0.020 0.276 0.355 sum -2.086 2.771 14.157 14.575 Atomic orbital electron populations 1.22147 0.94803 1.02372 1.02662 1.21548 0.94489 0.96072 0.84032 0.90626 1.23026 0.98931 0.99715 0.95798 1.21238 0.94836 0.89594 0.87866 0.91471 1.42316 1.14348 1.27487 1.50762 1.19184 0.90208 1.06445 1.22585 0.90964 1.24759 0.97877 0.98333 0.99116 1.69642 1.32511 1.24120 1.31138 0.86289 0.83613 0.78947 0.77458 1.21045 1.21561 1.21057 1.23828 0.94497 0.87897 1.00115 1.48469 1.52003 1.28873 1.04428 1.16379 0.80495 0.83107 0.80474 1.90784 1.38702 1.29146 1.83197 1.25804 1.13477 1.03571 0.99310 1.22062 0.96348 0.98784 0.87302 1.66265 1.11253 1.03517 1.38766 1.27768 1.00674 0.98117 0.97979 1.19870 0.95326 0.90340 1.00046 1.22183 1.00204 0.89025 1.05551 1.23155 1.03867 0.98547 0.95969 1.22986 1.01931 1.02009 0.94207 1.84992 1.44244 1.18476 1.03773 0.91341 0.91675 0.92468 0.89913 0.90113 0.77693 0.93172 0.91108 0.90399 0.79962 0.88463 0.89205 0.87495 0.88507 0.88215 0.88535 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.11 37.16 0.34 -1.82 16 2 C 0.14 2.04 3.48 -66.95 -0.23 1.81 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.14 -2.01 6.11 -24.89 -0.15 -2.16 16 5 C 0.18 3.17 3.69 -65.78 -0.24 2.92 16 6 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 7 N -0.71 -15.90 5.28 -51.35 -0.27 -16.17 16 8 C -0.25 -6.38 9.98 -15.06 -0.15 -6.53 16 9 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 10 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 11 N -0.93 -26.01 13.06 55.49 0.72 -25.28 16 12 Si 0.91 20.82 29.55 -169.99 -5.02 15.79 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.06 1.07 5.34 -2.53 -0.01 1.05 16 17 N -0.60 -9.60 3.06 -164.54 -0.50 -10.10 16 18 C 0.61 10.14 7.63 -12.85 -0.10 10.04 16 19 O -0.54 -9.95 15.79 5.20 0.08 -9.87 16 20 C -0.30 -4.51 6.39 -37.10 -0.24 -4.75 16 21 C 0.11 1.63 11.10 -18.85 -0.21 1.42 16 22 N -0.48 -6.81 10.51 -11.50 -0.12 -6.93 16 23 C 0.03 0.35 6.59 -13.29 -0.09 0.27 16 24 C -0.02 -0.15 6.08 -27.88 -0.17 -0.32 16 25 C -0.15 -1.42 5.72 -90.62 -0.52 -1.94 16 26 C -0.18 -1.58 10.18 -26.69 -0.27 -1.85 16 27 C -0.17 -1.36 10.25 -26.69 -0.27 -1.64 16 28 S 0.23 3.09 18.74 -107.50 -2.01 1.08 16 29 H 0.07 1.01 6.77 -51.93 -0.35 0.66 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.21 7.70 -51.93 -0.40 0.81 16 34 H 0.39 9.29 7.71 -40.82 -0.31 8.97 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.07 1.18 4.95 -29.16 -0.14 1.03 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.18 2.37 8.06 -52.49 -0.42 1.95 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 0.79 7.88 -51.93 -0.41 0.38 16 41 H 0.11 1.12 8.07 -51.93 -0.42 0.70 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 0.87 8.03 -51.93 -0.42 0.45 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -29.23 381.17 -10.45 -39.68 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.65 Total: 9.75 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.41 Total: -3.69 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.17 Total: -58.49 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.87 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.01 Total: 1.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.23 -10.45 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989228199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.979 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds