Wall clock time and date at job start Tue Mar 31 2020 19:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.99747 * 2 1 4 4 C 1.54336 * 109.98845 * 238.96399 * 2 1 3 5 5 C 1.55157 * 103.01982 * 218.66698 * 4 2 1 6 6 H 1.09002 * 111.00464 * 277.23149 * 5 4 2 7 7 N 1.46497 * 111.00428 * 153.38105 * 5 4 2 8 8 C 1.36939 * 119.99751 * 161.34921 * 7 5 4 9 9 H 1.08003 * 120.00400 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99975 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99844 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00011 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47166 * 59.99897 * 12 10 8 14 14 H 1.48502 * 109.47074 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47230 * 299.99833 * 12 10 8 16 16 C 1.54911 * 101.58123 * 35.30500 * 5 4 2 17 17 N 1.47017 * 109.88343 * 121.09652 * 2 1 3 18 18 C 1.34775 * 125.64874 * 298.39232 * 17 2 1 19 19 O 1.21688 * 120.00158 * 3.32951 * 18 17 2 20 20 C 1.46685 * 120.00084 * 183.32486 * 18 17 2 21 21 C 1.35657 * 126.13105 * 173.52783 * 20 18 17 22 22 N 1.30946 * 114.19125 * 179.73139 * 21 20 18 23 23 C 1.29420 * 117.36232 * 0.51689 * 22 21 20 24 24 C 1.50708 * 124.80471 * 179.75971 * 23 22 21 25 25 C 1.53008 * 109.46438 * 89.70273 * 24 23 22 26 26 C 1.52997 * 117.49591 * 116.25488 * 25 24 23 27 27 C 1.53000 * 117.49615 * 184.91403 * 25 24 23 28 28 S 1.70953 * 110.39438 * 359.50396 * 23 22 21 29 29 H 1.09003 * 109.46985 * 300.35822 * 1 2 3 30 30 H 1.09005 * 109.47052 * 60.35492 * 1 2 3 31 31 H 1.08995 * 109.47068 * 180.36050 * 1 2 3 32 32 H 1.09000 * 110.85182 * 100.20051 * 4 2 1 33 33 H 1.09000 * 110.66974 * 337.04570 * 4 2 1 34 34 H 0.96991 * 120.00355 * 341.34982 * 7 5 4 35 35 H 0.96993 * 119.99888 * 179.97438 * 11 10 8 36 36 H 1.08998 * 110.36625 * 204.15398 * 16 5 4 37 37 H 1.08996 * 110.45725 * 81.88181 * 16 5 4 38 38 H 1.08002 * 122.90516 * 0.02562 * 21 20 18 39 39 H 1.09001 * 109.46853 * 329.70591 * 24 23 22 40 40 H 1.08994 * 109.47541 * 209.70202 * 24 23 22 41 41 H 1.08995 * 115.55064 * 330.58573 * 25 24 23 42 42 H 1.08998 * 117.49622 * 215.00014 * 26 25 24 43 43 H 1.08999 * 117.50222 * 0.02562 * 26 25 24 44 44 H 1.08997 * 117.49761 * 359.97438 * 27 25 24 45 45 H 1.09003 * 117.50021 * 144.97273 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 6 3.2863 -1.5184 -0.6916 6 1 4.1670 -0.8769 -0.6580 7 7 3.5474 -2.7243 -1.4814 8 6 4.7733 -3.3313 -1.4192 9 1 5.5476 -2.9214 -0.7875 10 6 5.0210 -4.4737 -2.1680 11 7 4.0773 -4.9736 -2.9375 12 14 6.6930 -5.3022 -2.0826 13 1 6.9660 -5.7232 -0.6850 14 1 6.7007 -6.4939 -2.9686 15 1 7.7413 -4.3484 -2.5260 16 6 2.8099 -1.8825 0.7368 17 7 2.0301 -0.7141 1.1839 18 6 1.8075 -0.3620 2.4656 19 8 1.0914 0.5884 2.7201 20 6 2.4283 -1.1246 3.5541 21 6 2.3914 -0.8105 4.8732 22 7 3.0217 -1.6600 5.6450 23 6 3.5996 -2.6672 5.0736 24 6 4.3729 -3.7394 5.7973 25 6 3.4246 -4.8735 6.1919 26 6 3.6676 -6.2478 5.5650 27 6 3.9976 -6.0102 7.0408 28 16 3.3558 -2.6131 3.3824 29 1 -0.3633 0.5194 0.8868 30 1 -0.3633 0.5083 -0.8932 31 1 -0.3633 -1.0276 0.0065 32 1 2.3598 -0.0450 -2.0192 33 1 1.3066 -1.4405 -1.6226 34 1 2.8521 -3.0927 -2.0484 35 1 4.2505 -5.7715 -3.4610 36 1 3.6655 -2.0412 1.3931 37 1 2.1806 -2.7722 0.7133 38 1 1.8818 0.0622 5.2545 39 1 4.8274 -3.3173 6.6935 40 1 5.1529 -4.1290 5.1433 41 1 2.3912 -4.5798 6.3757 42 1 2.7940 -6.8582 5.3364 43 1 4.5032 -6.3442 4.8718 44 1 5.0501 -5.9503 7.3177 45 1 3.3412 -6.4640 7.7833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989228199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:44 Heat of formation + Delta-G solvation = 30.996967 kcal Electronic energy + Delta-G solvation = -26515.300830 eV Core-core repulsion = 22852.944097 eV Total energy + Delta-G solvation = -3662.356734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50628 -40.70470 -38.80022 -38.31581 -36.01005 -33.64923 -33.23366 -32.38702 -30.15862 -29.58186 -26.91799 -26.02171 -25.54290 -23.88929 -23.22151 -22.15008 -21.77031 -21.29744 -19.75925 -19.49041 -19.10385 -17.80171 -17.57583 -17.00578 -16.55713 -16.38790 -15.89065 -15.67757 -15.50880 -15.34456 -14.91576 -14.69799 -14.63668 -14.42549 -14.14979 -13.83584 -13.60028 -13.46925 -13.11532 -12.86799 -12.79736 -12.63787 -12.57054 -12.36230 -12.34435 -12.15396 -12.05558 -11.80651 -11.57575 -11.38494 -11.26672 -10.96840 -10.95398 -10.60252 -10.45520 -10.12062 -9.68672 -9.06116 -7.92699 -5.23170 -0.84503 0.13054 0.56629 1.31388 1.53060 1.54033 1.60028 1.77767 2.03614 2.58347 2.76714 3.06810 3.30575 3.37181 3.69668 3.73406 3.78680 3.85412 3.92424 4.02176 4.10957 4.12652 4.18503 4.21143 4.41345 4.43238 4.47899 4.60309 4.67970 4.69379 4.77038 4.79065 4.82653 4.97826 5.01901 5.06197 5.07260 5.19820 5.25206 5.27992 5.32492 5.36751 5.56368 6.26701 6.28587 6.53483 6.88261 7.36308 8.05056 8.30529 9.29631 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007510 B = 0.004784 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3727.312200 B = 5851.902469 C = 9015.784019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 H 0.084 0.916 4 C -0.123 4.123 5 C 0.171 3.829 6 H 0.067 0.933 7 N -0.719 5.719 8 C -0.246 4.246 9 H 0.080 0.920 10 C -0.062 4.062 11 N -0.964 5.964 12 Si 0.963 3.037 13 H -0.274 1.274 14 H -0.299 1.299 15 H -0.280 1.280 16 C 0.077 3.923 17 N -0.604 5.604 18 C 0.607 3.393 19 O -0.561 6.561 20 C -0.321 4.321 21 C 0.120 3.880 22 N -0.498 5.498 23 C 0.045 3.955 24 C -0.016 4.016 25 C -0.161 4.161 26 C -0.186 4.186 27 C -0.158 4.158 28 S 0.219 5.781 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.379 0.621 35 H 0.251 0.749 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.192 0.808 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 3.105 15.199 15.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.037 3.963 3 H 0.102 0.898 4 C -0.162 4.162 5 C 0.060 3.940 6 H 0.085 0.915 7 N -0.358 5.358 8 C -0.377 4.377 9 H 0.097 0.903 10 C -0.255 4.255 11 N -0.613 5.613 12 Si 0.792 3.208 13 H -0.200 1.200 14 H -0.226 1.226 15 H -0.206 1.206 16 C -0.050 4.050 17 N -0.337 5.337 18 C 0.396 3.604 19 O -0.442 6.442 20 C -0.445 4.445 21 C -0.039 4.039 22 N -0.212 5.212 23 C -0.228 4.228 24 C -0.056 4.056 25 C -0.181 4.181 26 C -0.223 4.223 27 C -0.195 4.195 28 S 0.479 5.521 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.212 0.788 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.209 0.791 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.128 0.872 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.398 2.927 15.144 15.487 hybrid contribution -0.077 0.020 0.006 0.080 sum -1.476 2.946 15.149 15.504 Atomic orbital electron populations 1.22079 0.93832 1.02115 1.03177 1.21686 0.95261 0.96218 0.83160 0.89767 1.22949 0.97333 0.99594 0.96301 1.21380 0.96230 0.88280 0.88107 0.91480 1.42407 1.13355 1.28688 1.51388 1.19548 0.91123 1.05883 1.21165 0.90255 1.25448 1.00831 0.99507 0.99736 1.69785 1.34265 1.24604 1.32693 0.85373 0.80228 0.77624 0.77534 1.19997 1.22584 1.20573 1.23483 0.94471 0.87755 0.99334 1.48480 1.51814 1.28610 1.04769 1.16540 0.80178 0.82897 0.80807 1.90764 1.39768 1.30187 1.83515 1.25700 1.15032 1.04528 0.99243 1.22275 0.95630 0.98887 0.87103 1.66343 1.12064 1.04079 1.38710 1.28261 0.99320 0.97868 0.97327 1.20055 0.95376 0.89665 1.00533 1.22095 0.99599 0.89224 1.07180 1.23218 1.04011 0.98039 0.97025 1.23088 1.02812 0.99935 0.93639 1.84930 1.44300 1.17987 1.04927 0.92741 0.89216 0.93056 0.88161 0.90222 0.78797 0.93968 0.90899 0.91510 0.79082 0.87206 0.87789 0.88806 0.88621 0.88065 0.87154 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.11 71.98 0.66 -3.26 16 2 C 0.14 3.83 3.48 45.35 0.16 3.99 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.12 -3.47 6.11 31.79 0.19 -3.28 16 5 C 0.17 5.96 3.69 46.38 0.17 6.14 16 6 H 0.07 2.36 8.13 -2.39 -0.02 2.34 16 7 N -0.72 -32.08 5.28 -316.36 -1.67 -33.75 16 8 C -0.25 -12.23 9.98 84.03 0.84 -11.39 16 9 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 10 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 11 N -0.96 -54.72 13.06 21.65 0.28 -54.44 16 12 Si 0.96 42.55 29.55 68.60 2.03 44.57 16 13 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 15 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 16 C 0.08 2.52 5.34 86.86 0.46 2.98 16 17 N -0.60 -18.79 3.06 -792.70 -2.43 -21.22 16 18 C 0.61 20.04 7.63 86.45 0.66 20.70 16 19 O -0.56 -20.57 15.79 -4.31 -0.07 -20.64 16 20 C -0.32 -9.60 6.39 23.88 0.15 -9.45 16 21 C 0.12 3.36 11.10 84.23 0.93 4.29 16 22 N -0.50 -13.43 10.51 -190.30 -2.00 -15.43 16 23 C 0.05 1.10 6.59 88.47 0.58 1.68 16 24 C -0.02 -0.29 6.08 29.85 0.18 -0.10 16 25 C -0.16 -2.78 5.72 -10.79 -0.06 -2.84 16 26 C -0.19 -2.99 10.18 30.62 0.31 -2.68 16 27 C -0.16 -2.09 10.25 30.62 0.31 -1.78 16 28 S 0.22 5.84 18.74 -56.49 -1.06 4.79 16 29 H 0.05 1.56 6.77 -2.39 -0.02 1.54 16 30 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.08 2.29 7.70 -2.39 -0.02 2.27 16 34 H 0.38 18.25 7.71 -92.72 -0.71 17.54 16 35 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 36 H 0.07 2.38 4.95 -16.87 -0.08 2.29 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.19 4.85 8.06 -2.91 -0.02 4.83 16 39 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.10 1.58 7.88 -2.39 -0.02 1.56 16 41 H 0.09 1.88 8.07 -2.39 -0.02 1.86 16 42 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.10 1.59 8.03 -2.39 -0.02 1.57 16 44 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -61.72 381.17 1.33 -60.39 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.22 Total: 33.54 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 6.02 Total: 2.20 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -5.82 Total: -124.84 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.07 Total: -20.64 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 5.84 SS G_CDS: -1.06 Total: 4.79 kcal Total: -61.72 1.33 -60.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989228199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.385 kcal (2) G-P(sol) polarization free energy of solvation -61.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds