Wall clock time and date at job start Tue Mar 31 2020 19:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.87361 * 2 1 4 4 C 1.54322 * 109.88331 * 121.17377 * 2 1 3 5 5 C 1.55153 * 102.94041 * 141.60970 * 4 2 1 6 6 H 1.09001 * 111.00492 * 82.57669 * 5 4 2 7 7 N 1.46506 * 111.00589 * 206.42213 * 5 4 2 8 8 C 1.36937 * 120.00264 * 204.99975 * 7 5 4 9 9 H 1.08001 * 119.99812 * 0.02562 * 8 7 5 10 10 C 1.38807 * 120.00069 * 180.02562 * 8 7 5 11 11 N 1.31624 * 119.99988 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00386 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46647 * 59.99924 * 12 10 8 14 14 H 1.48493 * 109.47477 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46831 * 300.00838 * 12 10 8 16 16 C 1.55127 * 101.49066 * 324.33671 * 5 4 2 17 17 N 1.47017 * 109.88413 * 238.98743 * 2 1 3 18 18 C 1.34773 * 125.65386 * 61.60161 * 17 2 1 19 19 O 1.21283 * 119.99463 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00376 * 180.02562 * 18 17 2 21 21 C 1.50704 * 109.47227 * 179.97438 * 20 18 17 22 22 C 1.33642 * 122.74762 * 84.97135 * 21 20 18 23 23 S 1.76198 * 107.92248 * 180.02562 * 22 21 20 24 24 C 1.70978 * 90.28297 * 0.02562 * 23 22 21 25 25 C 1.50703 * 124.91472 * 179.97438 * 24 23 22 26 26 C 1.52995 * 117.49959 * 8.64726 * 25 24 23 27 27 C 1.52988 * 60.00209 * 252.50880 * 26 25 24 28 28 N 1.29024 * 110.16811 * 359.97438 * 24 23 22 29 29 H 1.09002 * 109.47108 * 179.56235 * 1 2 3 30 30 H 1.08994 * 109.47063 * 299.55927 * 1 2 3 31 31 H 1.08997 * 109.47024 * 59.56570 * 1 2 3 32 32 H 1.08997 * 110.72459 * 259.97425 * 4 2 1 33 33 H 1.09008 * 110.71768 * 23.24931 * 4 2 1 34 34 H 0.96998 * 119.99427 * 25.00825 * 7 5 4 35 35 H 0.96997 * 120.00106 * 179.97438 * 11 10 8 36 36 H 1.09009 * 110.49573 * 278.45500 * 16 5 4 37 37 H 1.08991 * 110.34537 * 156.05968 * 16 5 4 38 38 H 1.08993 * 109.47188 * 60.00180 * 20 18 17 39 39 H 1.08999 * 109.46897 * 299.99904 * 20 18 17 40 40 H 1.07997 * 126.03754 * 0.02902 * 22 21 20 41 41 H 1.09001 * 115.54738 * 154.35736 * 25 24 23 42 42 H 1.09002 * 117.49887 * 0.02562 * 26 25 24 43 43 H 1.09004 * 117.50099 * 145.01900 * 26 25 24 44 44 H 1.08996 * 117.50052 * 252.51170 * 27 26 25 45 45 H 1.09006 * 117.49992 * 107.49006 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7512 1.2417 5 6 3.2876 -1.5151 0.6903 6 1 4.1654 -0.8697 0.6592 7 7 3.5533 -2.7216 1.4779 8 6 4.8165 -3.2486 1.5182 9 1 5.6171 -2.7746 0.9698 10 6 5.0681 -4.3919 2.2640 11 7 4.0922 -4.9699 2.9320 12 14 6.7914 -5.1104 2.3198 13 1 7.7295 -4.1039 2.8787 14 1 6.7955 -6.3212 3.1795 15 1 7.2196 -5.4768 0.9458 16 6 2.8100 -1.8814 -0.7395 17 7 2.0301 -0.7123 -1.1849 18 6 1.8075 -0.3586 -2.4662 19 8 1.1436 0.6249 -2.7171 20 6 2.3834 -1.1850 -3.5870 21 6 1.9903 -0.5803 -4.9103 22 6 2.6791 0.4100 -5.4857 23 16 1.8825 0.8131 -7.0047 24 6 0.7022 -0.3895 -6.7148 25 6 -0.4480 -0.7088 -7.6347 26 6 -0.4567 -0.0431 -9.0122 27 6 -1.4439 0.4129 -7.9361 28 7 0.9388 -0.9840 -5.5944 29 1 -0.3633 -1.0277 -0.0078 30 1 -0.3633 0.5069 0.8939 31 1 -0.3633 0.5205 -0.8860 32 1 2.3530 -0.0488 2.0200 33 1 1.3051 -1.4482 1.6162 34 1 2.8342 -3.1471 1.9706 35 1 4.2679 -5.7690 3.4529 36 1 2.1802 -2.7708 -0.7154 37 1 3.6656 -2.0392 -1.3960 38 1 1.9972 -2.2023 -3.5239 39 1 3.4701 -1.2030 -3.5038 40 1 3.5670 0.8800 -5.0895 41 1 -0.8394 -1.7236 -7.5632 42 1 0.3698 0.6255 -9.2533 43 1 -0.8537 -0.6200 -9.8475 44 1 -2.4904 0.1359 -8.0633 45 1 -1.2673 1.3818 -7.4690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989526946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:50 Heat of formation + Delta-G solvation = 49.208557 kcal Electronic energy + Delta-G solvation = -25969.122298 eV Core-core repulsion = 22307.555278 eV Total energy + Delta-G solvation = -3661.567020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.45181 -39.54376 -37.67601 -37.12908 -34.21433 -32.54071 -31.44993 -31.13645 -28.52070 -28.04101 -25.82925 -25.41855 -23.90825 -22.86265 -22.33201 -21.20645 -20.33243 -19.88725 -18.64393 -17.76175 -17.41662 -16.85987 -16.43274 -15.99376 -15.25243 -15.01702 -14.64751 -14.41946 -14.19373 -13.91956 -13.62629 -13.47848 -13.21107 -12.93605 -12.66511 -12.63648 -12.47570 -12.19226 -12.04812 -11.93262 -11.66901 -11.41502 -11.16416 -11.15287 -11.02141 -10.95610 -10.78291 -10.64971 -10.33641 -10.06968 -9.80653 -9.76748 -9.66200 -9.44766 -9.05212 -8.75199 -8.34621 -7.12976 -5.88387 -3.19603 0.56661 1.19921 1.57854 2.53547 2.83552 3.24446 3.37561 3.42456 3.43457 3.48018 3.71736 4.36756 4.47819 4.51901 4.58177 4.72708 4.87520 5.01472 5.09832 5.16201 5.18423 5.19649 5.26823 5.38270 5.42779 5.48841 5.56844 5.58500 5.63628 5.68601 5.71336 5.78231 5.82873 5.98535 6.10704 6.12003 6.17934 6.35004 6.46174 6.46776 6.67249 6.81504 7.59043 7.65787 7.80956 8.28724 8.38376 9.40869 9.94390 10.29260 11.33402 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.002392 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.023320 B =11703.283718 C =12558.207970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 H 0.071 0.929 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.068 0.932 7 N -0.711 5.711 8 C -0.250 4.250 9 H 0.072 0.928 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.909 3.091 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.070 3.930 17 N -0.609 5.609 18 C 0.533 3.467 19 O -0.545 6.545 20 C -0.066 4.066 21 C 0.097 3.903 22 C -0.244 4.244 23 S 0.114 5.886 24 C 0.080 3.920 25 C -0.084 4.084 26 C -0.169 4.169 27 C -0.160 4.160 28 N -0.460 5.460 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.387 0.613 35 H 0.258 0.742 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.177 0.823 41 H 0.133 0.867 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 11.492 -20.402 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.089 0.911 4 C -0.177 4.177 5 C 0.061 3.939 6 H 0.086 0.914 7 N -0.351 5.351 8 C -0.381 4.381 9 H 0.090 0.910 10 C -0.205 4.205 11 N -0.576 5.576 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.056 4.056 17 N -0.343 5.343 18 C 0.321 3.679 19 O -0.423 6.423 20 C -0.109 4.109 21 C -0.035 4.035 22 C -0.383 4.383 23 S 0.369 5.631 24 C -0.198 4.198 25 C -0.106 4.106 26 C -0.207 4.207 27 C -0.198 4.198 28 N -0.174 5.174 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.222 0.778 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.194 0.806 41 H 0.151 0.849 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.898 12.254 -21.195 25.725 hybrid contribution 1.017 -1.124 1.151 1.904 sum -6.880 11.130 -20.044 23.937 Atomic orbital electron populations 1.22125 0.95248 1.02186 1.02293 1.21493 0.94190 0.96013 0.84661 0.91128 1.23051 0.99217 0.99654 0.95757 1.21326 0.94665 0.89445 0.88513 0.91360 1.42321 1.09620 1.27641 1.55501 1.19201 0.86820 1.06877 1.25235 0.90990 1.24776 0.97659 0.98275 0.99744 1.69648 1.30901 1.22170 1.34895 0.86255 0.83909 0.78443 0.77471 1.21145 1.21634 1.21118 1.23586 0.94526 0.87524 0.99918 1.48604 1.52362 1.28949 1.04403 1.19911 0.80554 0.85098 0.82332 1.90667 1.40269 1.27935 1.83457 1.20187 1.02610 1.00591 0.87486 1.19461 0.91291 0.95806 0.96907 1.26742 1.07829 1.04366 0.99352 1.83679 1.21523 1.37368 1.20555 1.25980 1.00406 0.97377 0.96009 1.20399 0.95422 0.99843 0.94965 1.23140 1.02467 1.03344 0.91799 1.23142 0.96478 0.98400 1.01816 1.65886 1.17519 1.28789 1.05157 0.92554 0.91978 0.91708 0.90347 0.90389 0.77825 0.93241 0.91156 0.91198 0.87007 0.87094 0.80606 0.84907 0.88353 0.87257 0.87430 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.10 37.16 0.34 -1.96 16 2 C 0.14 2.10 3.46 -66.95 -0.23 1.87 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -2.14 6.12 -24.90 -0.15 -2.30 16 5 C 0.17 3.15 3.73 -65.66 -0.24 2.91 16 6 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 7 N -0.71 -16.46 5.24 -51.24 -0.27 -16.73 16 8 C -0.25 -6.49 9.96 -15.06 -0.15 -6.64 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -26.80 13.06 55.49 0.72 -26.08 16 12 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.07 1.15 6.39 -2.41 -0.02 1.14 16 17 N -0.61 -9.54 3.06 -162.88 -0.50 -10.04 16 18 C 0.53 8.59 7.64 -10.99 -0.08 8.51 16 19 O -0.55 -10.30 15.07 5.55 0.08 -10.21 16 20 C -0.07 -0.89 5.11 -29.03 -0.15 -1.04 16 21 C 0.10 1.37 5.23 -84.22 -0.44 0.93 16 22 C -0.24 -2.98 11.14 29.12 0.32 -2.65 16 23 S 0.11 1.18 21.94 -107.50 -2.36 -1.18 16 24 C 0.08 0.97 7.04 -13.46 -0.09 0.88 16 25 C -0.08 -0.77 6.33 -91.77 -0.58 -1.35 16 26 C -0.17 -1.07 10.01 -26.74 -0.27 -1.34 16 27 C -0.16 -1.15 10.23 -26.74 -0.27 -1.42 16 28 N -0.46 -6.79 10.53 -8.05 -0.08 -6.87 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.03 6.88 -51.93 -0.36 0.67 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.24 7.71 -51.92 -0.40 0.84 16 34 H 0.39 9.60 7.76 -40.82 -0.32 9.28 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 37 H 0.07 1.08 7.48 -51.93 -0.39 0.69 16 38 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.11 1.24 7.85 -51.93 -0.41 0.83 16 40 H 0.18 1.79 8.06 -52.49 -0.42 1.36 16 41 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.10 0.60 7.23 -51.93 -0.38 0.23 16 43 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 385.40 15.07 5.81 5.81 Total: -1.00 -31.75 385.40 -10.60 -42.35 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.86 Total: 9.37 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.12 Total: -2.78 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.13 Total: -59.72 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.36 Total: -1.18 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.75 -10.60 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989526946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.556 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds