Wall clock time and date at job start Tue Mar 31 2020 19:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.87361 * 2 1 4 4 C 1.54322 * 109.88331 * 121.17377 * 2 1 3 5 5 C 1.55153 * 102.94041 * 141.60970 * 4 2 1 6 6 H 1.09001 * 111.00492 * 82.57669 * 5 4 2 7 7 N 1.46506 * 111.00589 * 206.42213 * 5 4 2 8 8 C 1.36937 * 120.00264 * 204.99975 * 7 5 4 9 9 H 1.08001 * 119.99812 * 0.02562 * 8 7 5 10 10 C 1.38807 * 120.00069 * 180.02562 * 8 7 5 11 11 N 1.31624 * 119.99988 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00386 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46647 * 59.99924 * 12 10 8 14 14 H 1.48493 * 109.47477 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46831 * 300.00838 * 12 10 8 16 16 C 1.55127 * 101.49066 * 324.33671 * 5 4 2 17 17 N 1.47017 * 109.88413 * 238.98743 * 2 1 3 18 18 C 1.34773 * 125.65386 * 61.60161 * 17 2 1 19 19 O 1.21283 * 119.99463 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00376 * 180.02562 * 18 17 2 21 21 C 1.50704 * 109.47227 * 179.97438 * 20 18 17 22 22 C 1.33642 * 122.74762 * 84.97135 * 21 20 18 23 23 S 1.76198 * 107.92248 * 180.02562 * 22 21 20 24 24 C 1.70978 * 90.28297 * 0.02562 * 23 22 21 25 25 C 1.50703 * 124.91472 * 179.97438 * 24 23 22 26 26 C 1.52995 * 117.49959 * 8.64726 * 25 24 23 27 27 C 1.52988 * 60.00209 * 252.50880 * 26 25 24 28 28 N 1.29024 * 110.16811 * 359.97438 * 24 23 22 29 29 H 1.09002 * 109.47108 * 179.56235 * 1 2 3 30 30 H 1.08994 * 109.47063 * 299.55927 * 1 2 3 31 31 H 1.08997 * 109.47024 * 59.56570 * 1 2 3 32 32 H 1.08997 * 110.72459 * 259.97425 * 4 2 1 33 33 H 1.09008 * 110.71768 * 23.24931 * 4 2 1 34 34 H 0.96998 * 119.99427 * 25.00825 * 7 5 4 35 35 H 0.96997 * 120.00106 * 179.97438 * 11 10 8 36 36 H 1.09009 * 110.49573 * 278.45500 * 16 5 4 37 37 H 1.08991 * 110.34537 * 156.05968 * 16 5 4 38 38 H 1.08993 * 109.47188 * 60.00180 * 20 18 17 39 39 H 1.08999 * 109.46897 * 299.99904 * 20 18 17 40 40 H 1.07997 * 126.03754 * 0.02902 * 22 21 20 41 41 H 1.09001 * 115.54738 * 154.35736 * 25 24 23 42 42 H 1.09002 * 117.49887 * 0.02562 * 26 25 24 43 43 H 1.09004 * 117.50099 * 145.01900 * 26 25 24 44 44 H 1.08996 * 117.50052 * 252.51170 * 27 26 25 45 45 H 1.09006 * 117.49992 * 107.49006 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7512 1.2417 5 6 3.2876 -1.5151 0.6903 6 1 4.1654 -0.8697 0.6592 7 7 3.5533 -2.7216 1.4779 8 6 4.8165 -3.2486 1.5182 9 1 5.6171 -2.7746 0.9698 10 6 5.0681 -4.3919 2.2640 11 7 4.0922 -4.9699 2.9320 12 14 6.7914 -5.1104 2.3198 13 1 7.7295 -4.1039 2.8787 14 1 6.7955 -6.3212 3.1795 15 1 7.2196 -5.4768 0.9458 16 6 2.8100 -1.8814 -0.7395 17 7 2.0301 -0.7123 -1.1849 18 6 1.8075 -0.3586 -2.4662 19 8 1.1436 0.6249 -2.7171 20 6 2.3834 -1.1850 -3.5870 21 6 1.9903 -0.5803 -4.9103 22 6 2.6791 0.4100 -5.4857 23 16 1.8825 0.8131 -7.0047 24 6 0.7022 -0.3895 -6.7148 25 6 -0.4480 -0.7088 -7.6347 26 6 -0.4567 -0.0431 -9.0122 27 6 -1.4439 0.4129 -7.9361 28 7 0.9388 -0.9840 -5.5944 29 1 -0.3633 -1.0277 -0.0078 30 1 -0.3633 0.5069 0.8939 31 1 -0.3633 0.5205 -0.8860 32 1 2.3530 -0.0488 2.0200 33 1 1.3051 -1.4482 1.6162 34 1 2.8342 -3.1471 1.9706 35 1 4.2679 -5.7690 3.4529 36 1 2.1802 -2.7708 -0.7154 37 1 3.6656 -2.0392 -1.3960 38 1 1.9972 -2.2023 -3.5239 39 1 3.4701 -1.2030 -3.5038 40 1 3.5670 0.8800 -5.0895 41 1 -0.8394 -1.7236 -7.5632 42 1 0.3698 0.6255 -9.2533 43 1 -0.8537 -0.6200 -9.8475 44 1 -2.4904 0.1359 -8.0633 45 1 -1.2673 1.3818 -7.4690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989526946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:50 Heat of formation + Delta-G solvation = 30.344444 kcal Electronic energy + Delta-G solvation = -25969.940308 eV Core-core repulsion = 22307.555278 eV Total energy + Delta-G solvation = -3662.385029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.56634 -40.65813 -38.76554 -38.04768 -35.97115 -33.69936 -33.20645 -32.25584 -30.09053 -29.11880 -26.75438 -26.64284 -25.76601 -23.51659 -23.35343 -22.16717 -21.74708 -20.85597 -19.87549 -19.25352 -18.65554 -18.16495 -17.42641 -17.11399 -16.67225 -16.17084 -15.85702 -15.43801 -15.38550 -15.32490 -14.96693 -14.73991 -14.31124 -14.21796 -14.13600 -13.84636 -13.47262 -13.35988 -13.15815 -12.96546 -12.84322 -12.78732 -12.59232 -12.37046 -12.24992 -12.13925 -12.03355 -11.82482 -11.73126 -11.52535 -11.49455 -11.04184 -10.85964 -10.67257 -10.33854 -9.68639 -9.62415 -9.03939 -7.92962 -5.22937 -0.31936 0.35461 0.68369 1.51765 1.53119 1.53678 1.57817 1.59519 2.09619 2.58510 2.76769 3.01006 3.38342 3.43711 3.67338 3.78071 3.84065 3.89784 3.97241 3.98855 4.07988 4.16172 4.19278 4.31165 4.37443 4.41810 4.46256 4.50546 4.67738 4.69683 4.71823 4.76818 4.86142 4.89513 5.01336 5.05705 5.10429 5.13450 5.15024 5.21240 5.38478 5.41800 5.56303 6.27674 6.51453 6.75573 7.10873 7.35563 8.07025 8.30952 9.29671 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.002392 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.023320 B =11703.283718 C =12558.207970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 H 0.077 0.923 4 C -0.126 4.126 5 C 0.167 3.833 6 H 0.071 0.929 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.082 0.918 10 C -0.071 4.071 11 N -0.967 5.967 12 Si 0.969 3.031 13 H -0.278 1.278 14 H -0.300 1.300 15 H -0.277 1.277 16 C 0.084 3.916 17 N -0.608 5.608 18 C 0.533 3.467 19 O -0.574 6.574 20 C -0.062 4.062 21 C 0.073 3.927 22 C -0.258 4.258 23 S 0.164 5.836 24 C 0.067 3.933 25 C -0.112 4.112 26 C -0.147 4.147 27 C -0.157 4.157 28 N -0.501 5.501 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.134 0.866 40 H 0.193 0.807 41 H 0.132 0.868 42 H 0.102 0.898 43 H 0.132 0.868 44 H 0.124 0.876 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.065 12.769 -22.208 26.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.036 3.964 3 H 0.095 0.905 4 C -0.164 4.164 5 C 0.056 3.944 6 H 0.089 0.911 7 N -0.361 5.361 8 C -0.374 4.374 9 H 0.100 0.900 10 C -0.263 4.263 11 N -0.617 5.617 12 Si 0.799 3.201 13 H -0.205 1.205 14 H -0.227 1.227 15 H -0.203 1.203 16 C -0.042 4.042 17 N -0.341 5.341 18 C 0.322 3.678 19 O -0.454 6.454 20 C -0.104 4.104 21 C -0.059 4.059 22 C -0.397 4.397 23 S 0.420 5.580 24 C -0.210 4.210 25 C -0.134 4.134 26 C -0.185 4.185 27 C -0.196 4.196 28 N -0.216 5.216 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.209 0.791 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.152 0.848 40 H 0.210 0.790 41 H 0.149 0.851 42 H 0.120 0.880 43 H 0.150 0.850 44 H 0.142 0.858 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.366 13.579 -23.044 27.743 hybrid contribution 0.787 -1.396 1.618 2.277 sum -6.580 12.183 -21.426 25.511 Atomic orbital electron populations 1.22046 0.94649 1.01790 1.02546 1.21556 0.94646 0.96113 0.84103 0.90516 1.22947 0.97762 0.99466 0.96269 1.21490 0.95949 0.87995 0.88973 0.91117 1.42443 1.08513 1.28948 1.56236 1.19604 0.87997 1.06208 1.23587 0.90034 1.25524 1.00929 0.99358 1.00535 1.69800 1.32708 1.22684 1.36529 0.85276 0.80130 0.77288 0.77432 1.20452 1.22690 1.20273 1.23260 0.94754 0.87225 0.98923 1.48615 1.52181 1.28603 1.04712 1.20340 0.79926 0.84831 0.82670 1.90647 1.41575 1.29366 1.83812 1.20198 1.03794 0.99801 0.86619 1.19580 0.92017 0.96953 0.97346 1.27070 1.08346 1.03938 1.00329 1.83392 1.19862 1.35850 1.18869 1.26541 1.01313 0.97435 0.95721 1.20565 0.95720 1.00518 0.96616 1.23268 1.01870 1.02302 0.91087 1.23238 0.97306 0.97194 1.01883 1.65904 1.18569 1.30547 1.06559 0.93209 0.89759 0.93393 0.88959 0.90826 0.79100 0.94054 0.92369 0.89934 0.87152 0.84788 0.78985 0.85052 0.88015 0.84972 0.85812 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.10 71.98 0.66 -3.57 16 2 C 0.14 4.01 3.46 45.34 0.16 4.17 16 3 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.13 -3.75 6.12 31.78 0.19 -3.56 16 5 C 0.17 5.89 3.73 46.46 0.17 6.06 16 6 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16 7 N -0.72 -33.23 5.24 -316.01 -1.66 -34.88 16 8 C -0.24 -12.40 9.96 84.03 0.84 -11.56 16 9 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 10 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 11 N -0.97 -56.64 13.06 21.65 0.28 -56.36 16 12 Si 0.97 43.93 29.55 68.60 2.03 45.96 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 14 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 16 C 0.08 2.68 6.39 86.93 0.56 3.23 16 17 N -0.61 -18.50 3.06 -787.63 -2.41 -20.91 16 18 C 0.53 16.89 7.64 87.66 0.67 17.56 16 19 O -0.57 -21.57 15.07 -3.04 -0.05 -21.62 16 20 C -0.06 -1.64 5.11 29.10 0.15 -1.49 16 21 C 0.07 2.02 5.23 41.52 0.22 2.24 16 22 C -0.26 -6.03 11.14 66.78 0.74 -5.28 16 23 S 0.16 3.17 21.94 -56.49 -1.24 1.93 16 24 C 0.07 1.59 7.04 88.52 0.62 2.21 16 25 C -0.11 -1.93 6.33 -11.54 -0.07 -2.00 16 26 C -0.15 -1.52 10.01 30.59 0.31 -1.21 16 27 C -0.16 -2.02 10.23 30.59 0.31 -1.71 16 28 N -0.50 -14.86 10.53 -179.39 -1.89 -16.75 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.50 6.88 -2.39 -0.02 1.49 16 32 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.07 2.29 7.71 -2.38 -0.02 2.27 16 34 H 0.38 18.85 7.76 -92.71 -0.72 18.13 16 35 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.08 2.42 7.48 -2.39 -0.02 2.40 16 38 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.13 2.80 7.85 -2.39 -0.02 2.78 16 40 H 0.19 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.13 2.22 8.14 -2.39 -0.02 2.21 16 42 H 0.10 0.98 7.23 -2.39 -0.02 0.97 16 43 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -68.41 385.40 1.34 -67.08 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.28 Total: 33.85 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 5.99 Total: 1.70 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -5.68 Total: -128.90 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.05 Total: -21.62 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.24 Total: 1.93 kcal Total: -68.41 1.34 -67.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989526946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.421 kcal (2) G-P(sol) polarization free energy of solvation -68.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds