Wall clock time and date at job start Tue Mar 31 2020 19:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.32826 * 2 1 4 4 C 1.54913 * 110.36350 * 237.64577 * 2 1 3 5 5 C 1.55161 * 101.57901 * 204.15300 * 4 2 1 6 6 H 1.09000 * 110.71574 * 276.96073 * 5 4 2 7 7 N 1.46501 * 110.71859 * 153.86959 * 5 4 2 8 8 C 1.36930 * 120.00033 * 154.99982 * 7 5 4 9 9 H 1.08000 * 120.00460 * 359.97438 * 8 7 5 10 10 C 1.38819 * 120.00015 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99528 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99993 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47161 * 90.00000 * 12 10 8 14 14 H 1.48495 * 109.47101 * 210.00216 * 12 10 8 15 15 H 1.48501 * 109.47033 * 330.00174 * 12 10 8 16 16 C 1.54330 * 103.02273 * 35.30676 * 5 4 2 17 17 N 1.47023 * 107.26711 * 338.14165 * 16 5 4 18 18 C 1.34774 * 125.64996 * 178.84492 * 17 16 5 19 19 O 1.21283 * 120.00024 * 179.68822 * 18 17 16 20 20 C 1.50700 * 119.99910 * 359.69654 * 18 17 16 21 21 C 1.50701 * 109.47016 * 179.97438 * 20 18 17 22 22 C 1.33641 * 122.75087 * 84.97461 * 21 20 18 23 23 S 1.76198 * 107.92457 * 180.02562 * 22 21 20 24 24 C 1.70976 * 90.28409 * 359.97438 * 23 22 21 25 25 C 1.50697 * 124.91679 * 179.97438 * 24 23 22 26 26 C 1.53002 * 117.49992 * 351.27880 * 25 24 23 27 27 C 1.53000 * 117.50034 * 59.93653 * 25 24 23 28 28 N 1.29028 * 110.16341 * 0.24336 * 24 23 22 29 29 H 1.09004 * 109.47370 * 299.21633 * 1 2 3 30 30 H 1.08997 * 109.47508 * 59.21338 * 1 2 3 31 31 H 1.08999 * 109.47470 * 179.21712 * 1 2 3 32 32 H 1.09000 * 111.00310 * 322.22277 * 4 2 1 33 33 H 1.08995 * 111.00318 * 86.04237 * 4 2 1 34 34 H 0.97004 * 119.99689 * 334.99192 * 7 5 4 35 35 H 0.97005 * 119.99577 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.99412 * 218.66839 * 16 5 4 37 37 H 1.09000 * 109.77591 * 97.49393 * 16 5 4 38 38 H 1.08996 * 109.47004 * 59.99794 * 20 18 17 39 39 H 1.09000 * 109.46933 * 299.99684 * 20 18 17 40 40 H 1.08004 * 126.03489 * 359.96630 * 22 21 20 41 41 H 1.09002 * 115.54932 * 205.60717 * 25 24 23 42 42 H 1.09000 * 117.49996 * 215.00670 * 26 25 24 43 43 H 1.08999 * 117.49664 * 0.02562 * 26 25 24 44 44 H 1.09008 * 117.49673 * 359.97438 * 27 25 24 45 45 H 1.08999 * 117.49959 * 144.99344 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0690 -0.7772 -1.2269 5 6 3.4777 -1.2006 -0.7330 6 1 4.1950 -0.3922 -0.8747 7 7 3.9249 -2.4144 -1.4206 8 6 5.2629 -2.6780 -1.5439 9 1 5.9887 -1.9909 -1.1345 10 6 5.6866 -3.8284 -2.1950 11 7 4.8022 -4.6655 -2.6944 12 14 7.5120 -4.1877 -2.3637 13 1 7.9709 -4.9793 -1.1942 14 1 7.7514 -4.9602 -3.6091 15 1 8.2648 -2.9089 -2.4221 16 6 3.2525 -1.4717 0.7696 17 7 2.0431 -0.7373 1.1690 18 6 1.4972 -0.7339 2.4013 19 8 0.4967 -0.0841 2.6196 20 6 2.1302 -1.5375 3.5079 21 6 1.3325 -1.3634 4.7746 22 6 0.2545 -2.1010 5.0573 23 16 -0.3686 -1.5743 6.6190 24 6 0.8827 -0.4152 6.7369 25 6 1.0722 0.5351 7.8910 26 6 -0.0379 0.6006 8.9419 27 6 1.2953 -0.0725 9.2773 28 7 1.6380 -0.4682 5.6921 29 1 -0.3634 0.5016 0.8969 30 1 -0.3634 0.5260 -0.8828 31 1 -0.3634 -1.0275 -0.0140 32 1 1.4510 -1.6496 -1.4391 33 1 2.1391 -0.1288 -2.1001 34 1 3.2730 -3.0314 -1.7886 35 1 5.0983 -5.4693 -3.1497 36 1 4.1080 -1.1176 1.3445 37 1 3.1089 -2.5396 0.9341 38 1 3.1505 -1.1907 3.6710 39 1 2.1447 -2.5912 3.2292 40 1 -0.1618 -2.8814 4.4375 41 1 1.5985 1.4604 7.6565 42 1 -0.2420 1.5690 9.3987 43 1 -0.9051 -0.0440 8.7987 44 1 1.3045 -1.1598 9.3547 45 1 1.9683 0.4529 9.9548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989526948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:56 Heat of formation + Delta-G solvation = 51.847504 kcal Electronic energy + Delta-G solvation = -25986.588480 eV Core-core repulsion = 22325.135893 eV Total energy + Delta-G solvation = -3661.452587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.45363 -39.55367 -37.66088 -37.10330 -34.19196 -32.57747 -31.45005 -31.11814 -28.52060 -28.02086 -25.82112 -25.32524 -23.92541 -22.87604 -22.32350 -21.22706 -20.31389 -19.89461 -18.70141 -17.75170 -17.34447 -16.69915 -16.39151 -16.08765 -15.34146 -15.05517 -14.65119 -14.33358 -14.27475 -13.83945 -13.70346 -13.49249 -13.11306 -13.03522 -12.72682 -12.60376 -12.32869 -12.08257 -12.00094 -11.83655 -11.75521 -11.37129 -11.25551 -11.17046 -11.04356 -10.95295 -10.80854 -10.68189 -10.32845 -10.07456 -9.78418 -9.75800 -9.49849 -9.39634 -9.03489 -8.73046 -8.31242 -7.13684 -5.88534 -3.19597 0.57982 1.20939 1.59310 2.54031 2.84908 3.29920 3.37266 3.43306 3.44449 3.44585 3.70947 4.36104 4.48734 4.50759 4.58973 4.73301 4.88521 5.03443 5.10278 5.17236 5.19025 5.23330 5.25039 5.38959 5.44590 5.48492 5.56962 5.58885 5.62113 5.65838 5.72574 5.83516 5.87943 6.00953 6.09727 6.12693 6.21297 6.41562 6.46656 6.51034 6.70848 6.84626 7.60093 7.66646 7.82763 8.28692 8.40899 9.40914 9.94493 10.29396 11.33334 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.002420 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.309083 B =11566.260065 C =12536.418105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.071 0.929 4 C -0.137 4.137 5 C 0.172 3.828 6 H 0.068 0.932 7 N -0.713 5.713 8 C -0.249 4.249 9 H 0.073 0.927 10 C -0.009 4.009 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.071 3.929 17 N -0.609 5.609 18 C 0.534 3.466 19 O -0.543 6.543 20 C -0.066 4.066 21 C 0.097 3.903 22 C -0.243 4.243 23 S 0.114 5.886 24 C 0.079 3.921 25 C -0.084 4.084 26 C -0.169 4.169 27 C -0.160 4.160 28 N -0.460 5.460 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.177 0.823 41 H 0.133 0.867 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.654 8.291 20.013 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.089 0.911 4 C -0.176 4.176 5 C 0.060 3.940 6 H 0.086 0.914 7 N -0.352 5.352 8 C -0.380 4.380 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.055 4.055 17 N -0.343 5.343 18 C 0.322 3.678 19 O -0.422 6.422 20 C -0.109 4.109 21 C -0.035 4.035 22 C -0.382 4.382 23 S 0.369 5.631 24 C -0.199 4.199 25 C -0.106 4.106 26 C -0.208 4.208 27 C -0.199 4.199 28 N -0.174 5.174 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.194 0.806 41 H 0.151 0.849 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.407 8.658 20.723 25.189 hybrid contribution 1.420 -0.742 -1.161 1.978 sum -9.987 7.916 19.561 23.346 Atomic orbital electron populations 1.22154 0.94410 1.02405 1.03024 1.21850 0.94716 0.95302 0.84707 0.91081 1.23176 0.97888 1.00284 0.96254 1.21164 0.93269 0.91099 0.88476 0.91398 1.42384 1.05277 1.22195 1.65369 1.19262 0.83327 1.04500 1.30939 0.90905 1.24779 0.97740 0.97350 1.00650 1.69662 1.32301 1.13366 1.42328 0.86182 0.84782 0.77929 0.77221 1.21588 1.21717 1.20633 1.23357 0.85148 0.96623 1.00414 1.48600 1.28623 1.48457 1.08641 1.19898 0.83979 0.81869 0.82038 1.90621 1.25625 1.44051 1.81867 1.20192 1.00042 1.02201 0.88464 1.19457 0.95525 0.92816 0.95676 1.26754 1.01804 1.08780 1.00836 1.83683 1.31201 1.31686 1.16516 1.25968 0.95553 1.00700 0.97653 1.20398 1.05246 0.99037 0.85879 1.23156 0.92659 1.03486 1.01449 1.23153 0.99562 1.01081 0.96083 1.65883 1.29564 1.20738 1.01189 0.89906 0.92428 0.92870 0.90554 0.90196 0.77864 0.93324 0.92121 0.90823 0.87104 0.87073 0.80592 0.84949 0.87260 0.88325 0.88229 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.71 37.16 0.32 -2.02 16 2 C 0.14 2.06 3.76 -66.41 -0.25 1.81 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -2.15 6.13 -24.58 -0.15 -2.30 16 5 C 0.17 3.15 3.60 -66.09 -0.24 2.91 16 6 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 7 N -0.71 -16.53 5.15 -51.65 -0.27 -16.80 16 8 C -0.25 -6.48 9.96 -15.06 -0.15 -6.63 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 11 N -0.93 -26.84 13.06 55.49 0.72 -26.12 16 12 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.07 1.17 6.25 -3.06 -0.02 1.15 16 17 N -0.61 -9.60 3.24 -163.04 -0.53 -10.13 16 18 C 0.53 8.63 7.62 -10.99 -0.08 8.54 16 19 O -0.54 -10.10 13.69 5.55 0.08 -10.02 16 20 C -0.07 -0.91 5.30 -29.03 -0.15 -1.06 16 21 C 0.10 1.38 5.23 -84.23 -0.44 0.94 16 22 C -0.24 -3.03 11.14 29.12 0.32 -2.70 16 23 S 0.11 1.20 21.94 -107.50 -2.36 -1.16 16 24 C 0.08 0.96 7.04 -13.46 -0.09 0.86 16 25 C -0.08 -0.76 6.33 -91.77 -0.58 -1.34 16 26 C -0.17 -1.09 10.02 -26.69 -0.27 -1.35 16 27 C -0.16 -1.05 10.24 -26.70 -0.27 -1.32 16 28 N -0.46 -6.78 10.53 -8.06 -0.08 -6.86 16 29 H 0.08 1.34 5.89 -51.93 -0.31 1.03 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.25 7.92 -51.93 -0.41 0.84 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.39 9.64 7.76 -40.82 -0.32 9.32 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.29 8.03 -51.93 -0.42 0.88 16 38 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.18 1.87 8.06 -52.48 -0.42 1.45 16 41 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.63 7.23 -51.93 -0.38 0.25 16 44 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 45 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -31.52 384.01 -10.69 -42.21 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.87 Total: 9.50 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.15 Total: -2.84 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.15 Total: -59.91 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.36 Total: -1.16 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.52 -10.69 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989526948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.057 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds