Wall clock time and date at job start Tue Mar 31 2020 19:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.32826 * 2 1 4 4 C 1.54913 * 110.36350 * 237.64577 * 2 1 3 5 5 C 1.55161 * 101.57901 * 204.15300 * 4 2 1 6 6 H 1.09000 * 110.71574 * 276.96073 * 5 4 2 7 7 N 1.46501 * 110.71859 * 153.86959 * 5 4 2 8 8 C 1.36930 * 120.00033 * 154.99982 * 7 5 4 9 9 H 1.08000 * 120.00460 * 359.97438 * 8 7 5 10 10 C 1.38819 * 120.00015 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99528 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99993 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47161 * 90.00000 * 12 10 8 14 14 H 1.48495 * 109.47101 * 210.00216 * 12 10 8 15 15 H 1.48501 * 109.47033 * 330.00174 * 12 10 8 16 16 C 1.54330 * 103.02273 * 35.30676 * 5 4 2 17 17 N 1.47023 * 107.26711 * 338.14165 * 16 5 4 18 18 C 1.34774 * 125.64996 * 178.84492 * 17 16 5 19 19 O 1.21283 * 120.00024 * 179.68822 * 18 17 16 20 20 C 1.50700 * 119.99910 * 359.69654 * 18 17 16 21 21 C 1.50701 * 109.47016 * 179.97438 * 20 18 17 22 22 C 1.33641 * 122.75087 * 84.97461 * 21 20 18 23 23 S 1.76198 * 107.92457 * 180.02562 * 22 21 20 24 24 C 1.70976 * 90.28409 * 359.97438 * 23 22 21 25 25 C 1.50697 * 124.91679 * 179.97438 * 24 23 22 26 26 C 1.53002 * 117.49992 * 351.27880 * 25 24 23 27 27 C 1.53000 * 117.50034 * 59.93653 * 25 24 23 28 28 N 1.29028 * 110.16341 * 0.24336 * 24 23 22 29 29 H 1.09004 * 109.47370 * 299.21633 * 1 2 3 30 30 H 1.08997 * 109.47508 * 59.21338 * 1 2 3 31 31 H 1.08999 * 109.47470 * 179.21712 * 1 2 3 32 32 H 1.09000 * 111.00310 * 322.22277 * 4 2 1 33 33 H 1.08995 * 111.00318 * 86.04237 * 4 2 1 34 34 H 0.97004 * 119.99689 * 334.99192 * 7 5 4 35 35 H 0.97005 * 119.99577 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.99412 * 218.66839 * 16 5 4 37 37 H 1.09000 * 109.77591 * 97.49393 * 16 5 4 38 38 H 1.08996 * 109.47004 * 59.99794 * 20 18 17 39 39 H 1.09000 * 109.46933 * 299.99684 * 20 18 17 40 40 H 1.08004 * 126.03489 * 359.96630 * 22 21 20 41 41 H 1.09002 * 115.54932 * 205.60717 * 25 24 23 42 42 H 1.09000 * 117.49996 * 215.00670 * 26 25 24 43 43 H 1.08999 * 117.49664 * 0.02562 * 26 25 24 44 44 H 1.09008 * 117.49673 * 359.97438 * 27 25 24 45 45 H 1.08999 * 117.49959 * 144.99344 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0690 -0.7772 -1.2269 5 6 3.4777 -1.2006 -0.7330 6 1 4.1950 -0.3922 -0.8747 7 7 3.9249 -2.4144 -1.4206 8 6 5.2629 -2.6780 -1.5439 9 1 5.9887 -1.9909 -1.1345 10 6 5.6866 -3.8284 -2.1950 11 7 4.8022 -4.6655 -2.6944 12 14 7.5120 -4.1877 -2.3637 13 1 7.9709 -4.9793 -1.1942 14 1 7.7514 -4.9602 -3.6091 15 1 8.2648 -2.9089 -2.4221 16 6 3.2525 -1.4717 0.7696 17 7 2.0431 -0.7373 1.1690 18 6 1.4972 -0.7339 2.4013 19 8 0.4967 -0.0841 2.6196 20 6 2.1302 -1.5375 3.5079 21 6 1.3325 -1.3634 4.7746 22 6 0.2545 -2.1010 5.0573 23 16 -0.3686 -1.5743 6.6190 24 6 0.8827 -0.4152 6.7369 25 6 1.0722 0.5351 7.8910 26 6 -0.0379 0.6006 8.9419 27 6 1.2953 -0.0725 9.2773 28 7 1.6380 -0.4682 5.6921 29 1 -0.3634 0.5016 0.8969 30 1 -0.3634 0.5260 -0.8828 31 1 -0.3634 -1.0275 -0.0140 32 1 1.4510 -1.6496 -1.4391 33 1 2.1391 -0.1288 -2.1001 34 1 3.2730 -3.0314 -1.7886 35 1 5.0983 -5.4693 -3.1497 36 1 4.1080 -1.1176 1.3445 37 1 3.1089 -2.5396 0.9341 38 1 3.1505 -1.1907 3.6710 39 1 2.1447 -2.5912 3.2292 40 1 -0.1618 -2.8814 4.4375 41 1 1.5985 1.4604 7.6565 42 1 -0.2420 1.5690 9.3987 43 1 -0.9051 -0.0440 8.7987 44 1 1.3045 -1.1598 9.3547 45 1 1.9683 0.4529 9.9548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989526948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:55 Heat of formation + Delta-G solvation = 33.201708 kcal Electronic energy + Delta-G solvation = -25987.397022 eV Core-core repulsion = 22325.135893 eV Total energy + Delta-G solvation = -3662.261129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58142 -40.66584 -38.73239 -38.03553 -35.94824 -33.73759 -33.21828 -32.23351 -30.10637 -29.10988 -26.72079 -26.58578 -25.78294 -23.51981 -23.35332 -22.16206 -21.74834 -20.87326 -19.92708 -19.21736 -18.67788 -17.96296 -17.41718 -17.18848 -16.68646 -16.28067 -15.83476 -15.56043 -15.39652 -15.17308 -15.08151 -14.67761 -14.36280 -14.23879 -14.13938 -13.67316 -13.36189 -13.28505 -13.13964 -13.04485 -12.88370 -12.81349 -12.57642 -12.36448 -12.24508 -12.15457 -12.10288 -11.82246 -11.71467 -11.53157 -11.50972 -11.01693 -10.68241 -10.65982 -10.33636 -9.63931 -9.61943 -9.06078 -7.93790 -5.23621 -0.32229 0.34793 0.68077 1.51369 1.51594 1.54040 1.58163 1.60014 2.10912 2.57832 2.79288 2.98475 3.37723 3.45722 3.68218 3.78391 3.82579 3.88668 3.95523 3.99553 4.06504 4.18719 4.19213 4.32388 4.37437 4.42154 4.50651 4.52017 4.67615 4.71003 4.74328 4.79483 4.87448 4.90627 5.02123 5.09852 5.11986 5.16562 5.16741 5.23959 5.32839 5.53501 5.56108 6.27003 6.52796 6.74684 7.13296 7.34932 8.06306 8.30281 9.29022 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.002420 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.309083 B =11566.260065 C =12536.418105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.082 0.918 4 C -0.125 4.125 5 C 0.165 3.835 6 H 0.072 0.928 7 N -0.723 5.723 8 C -0.241 4.241 9 H 0.081 0.919 10 C -0.071 4.071 11 N -0.967 5.967 12 Si 0.969 3.031 13 H -0.288 1.288 14 H -0.300 1.300 15 H -0.269 1.269 16 C 0.084 3.916 17 N -0.609 5.609 18 C 0.533 3.467 19 O -0.568 6.568 20 C -0.062 4.062 21 C 0.075 3.925 22 C -0.261 4.261 23 S 0.164 5.836 24 C 0.069 3.931 25 C -0.114 4.114 26 C -0.155 4.155 27 C -0.148 4.148 28 N -0.499 5.499 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.376 0.624 35 H 0.250 0.750 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.189 0.811 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.830 9.298 21.632 25.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.034 3.966 3 H 0.100 0.900 4 C -0.163 4.163 5 C 0.055 3.945 6 H 0.090 0.910 7 N -0.362 5.362 8 C -0.373 4.373 9 H 0.099 0.901 10 C -0.263 4.263 11 N -0.617 5.617 12 Si 0.798 3.202 13 H -0.215 1.215 14 H -0.227 1.227 15 H -0.194 1.194 16 C -0.041 4.041 17 N -0.343 5.343 18 C 0.322 3.678 19 O -0.448 6.448 20 C -0.104 4.104 21 C -0.056 4.056 22 C -0.400 4.400 23 S 0.420 5.580 24 C -0.208 4.208 25 C -0.136 4.136 26 C -0.193 4.193 27 C -0.186 4.186 28 N -0.214 5.214 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.144 0.856 40 H 0.206 0.794 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.587 9.712 22.377 27.006 hybrid contribution 1.381 -0.960 -1.569 2.300 sum -10.206 8.751 20.808 24.773 Atomic orbital electron populations 1.22047 0.93798 1.01919 1.03266 1.21942 0.95178 0.95559 0.83967 0.90026 1.23069 0.95896 1.00266 0.97110 1.21347 0.94728 0.89319 0.89100 0.91017 1.42506 1.04238 1.23458 1.66029 1.19643 0.84716 1.03927 1.28990 0.90085 1.25515 1.01372 0.97830 1.01626 1.69808 1.33905 1.13882 1.44124 0.85210 0.80614 0.77867 0.76479 1.21536 1.22652 1.19351 1.23014 0.85865 0.96124 0.99143 1.48622 1.28336 1.48334 1.08971 1.20287 0.83592 0.81563 0.82335 1.90608 1.26782 1.45188 1.82269 1.20185 0.99916 1.02547 0.87797 1.19558 0.96445 0.93656 0.95988 1.27048 1.01703 1.08998 1.02232 1.83398 1.29631 1.30274 1.14703 1.26553 0.95458 1.01126 0.97701 1.20552 1.07962 0.98918 0.86127 1.23288 0.92230 1.04480 0.99265 1.23268 0.99976 1.01268 0.94123 1.65904 1.31227 1.21901 1.02345 0.91555 0.90162 0.93735 0.91389 0.88656 0.79163 0.94067 0.91080 0.91928 0.86802 0.85617 0.79412 0.85354 0.85270 0.88188 0.88280 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 8.71 71.98 0.63 -3.60 16 2 C 0.14 3.90 3.76 45.47 0.17 4.07 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.12 -3.74 6.13 31.99 0.20 -3.55 16 5 C 0.17 5.87 3.60 46.18 0.17 6.04 16 6 H 0.07 2.52 8.09 -2.39 -0.02 2.50 16 7 N -0.72 -33.40 5.15 -317.31 -1.64 -35.03 16 8 C -0.24 -12.40 9.96 84.04 0.84 -11.56 16 9 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 10 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 11 N -0.97 -56.68 13.06 21.65 0.28 -56.40 16 12 Si 0.97 44.15 29.55 68.60 2.03 46.17 16 13 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 14 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 16 C 0.08 2.71 6.25 86.73 0.54 3.25 16 17 N -0.61 -18.71 3.24 -788.13 -2.55 -21.27 16 18 C 0.53 17.05 7.62 87.66 0.67 17.72 16 19 O -0.57 -21.10 13.69 -3.04 -0.04 -21.15 16 20 C -0.06 -1.70 5.30 29.10 0.15 -1.54 16 21 C 0.08 2.13 5.23 41.52 0.22 2.35 16 22 C -0.26 -6.38 11.14 66.78 0.74 -5.64 16 23 S 0.16 3.25 21.94 -56.49 -1.24 2.01 16 24 C 0.07 1.63 7.04 88.52 0.62 2.25 16 25 C -0.11 -1.93 6.33 -11.54 -0.07 -2.00 16 26 C -0.15 -1.63 10.02 30.62 0.31 -1.32 16 27 C -0.15 -1.62 10.24 30.62 0.31 -1.31 16 28 N -0.50 -14.75 10.53 -179.40 -1.89 -16.64 16 29 H 0.07 2.10 5.89 -2.39 -0.01 2.09 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 2.18 7.92 -2.39 -0.02 2.17 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.38 18.92 7.76 -92.71 -0.72 18.20 16 35 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 37 H 0.06 2.18 8.03 -2.39 -0.02 2.16 16 38 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.19 3.90 8.06 -2.91 -0.02 3.87 16 41 H 0.13 2.22 8.14 -2.39 -0.02 2.21 16 42 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.10 1.03 7.23 -2.39 -0.02 1.01 16 44 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -67.68 384.01 1.19 -66.48 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.28 Total: 34.03 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 5.96 Total: 1.77 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -5.80 Total: -129.33 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.04 Total: -21.15 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.24 Total: 2.01 kcal Total: -67.68 1.19 -66.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989526948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.686 kcal (2) G-P(sol) polarization free energy of solvation -67.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds