Wall clock time and date at job start Tue Mar 31 2020 19:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.87468 * 2 1 4 4 C 1.54325 * 109.88263 * 238.98100 * 2 1 3 5 5 C 1.55154 * 102.94404 * 218.38988 * 4 2 1 6 6 H 1.09002 * 111.00378 * 153.57794 * 5 4 2 7 7 N 1.46508 * 111.00515 * 277.39382 * 5 4 2 8 8 C 1.36928 * 119.99741 * 201.81950 * 7 5 4 9 9 H 1.08005 * 120.00561 * 0.02562 * 8 7 5 10 10 C 1.38816 * 120.00040 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99661 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00274 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46787 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47140 * 119.99604 * 12 10 8 15 15 H 1.48498 * 109.46702 * 239.99807 * 12 10 8 16 16 C 1.54914 * 101.58036 * 35.50280 * 5 4 2 17 17 N 1.47018 * 109.88163 * 121.17582 * 2 1 3 18 18 C 1.34775 * 125.64781 * 298.38135 * 17 2 1 19 19 O 1.21285 * 120.00298 * 359.97438 * 18 17 2 20 20 C 1.50708 * 119.99975 * 179.97438 * 18 17 2 21 21 C 1.50700 * 109.46859 * 179.97438 * 20 18 17 22 22 C 1.33629 * 122.75450 * 85.02555 * 21 20 18 23 23 S 1.76198 * 107.92981 * 179.97438 * 22 21 20 24 24 C 1.70977 * 90.27914 * 0.02562 * 23 22 21 25 25 C 1.50701 * 124.91360 * 180.02562 * 24 23 22 26 26 C 1.53005 * 117.49992 * 8.71613 * 25 24 23 27 27 C 1.53011 * 117.49606 * 300.05911 * 25 24 23 28 28 N 1.29027 * 110.16678 * 359.73253 * 24 23 22 29 29 H 1.09000 * 109.46918 * 181.01173 * 1 2 3 30 30 H 1.08997 * 109.47474 * 301.02094 * 1 2 3 31 31 H 1.08999 * 109.46984 * 61.02131 * 1 2 3 32 32 H 1.09011 * 110.71859 * 100.02630 * 4 2 1 33 33 H 1.09004 * 110.87491 * 336.82866 * 4 2 1 34 34 H 0.96995 * 119.99891 * 21.81742 * 7 5 4 35 35 H 0.97002 * 119.99869 * 179.97438 * 11 10 8 36 36 H 1.08998 * 110.36125 * 81.82698 * 16 5 4 37 37 H 1.08994 * 110.36786 * 204.14975 * 16 5 4 38 38 H 1.08991 * 109.47322 * 299.99640 * 20 18 17 39 39 H 1.08997 * 109.46897 * 60.00354 * 20 18 17 40 40 H 1.08001 * 126.03406 * 0.02562 * 22 21 20 41 41 H 1.08994 * 115.55085 * 154.39678 * 25 24 23 42 42 H 1.08991 * 117.49487 * 0.02562 * 26 25 24 43 43 H 1.08999 * 117.49132 * 145.02235 * 26 25 24 44 44 H 1.09004 * 117.49507 * 214.97728 * 27 25 24 45 45 H 1.08999 * 117.49747 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2437 5 6 3.2876 -1.5133 -0.6945 6 1 3.4852 -2.4093 -1.2829 7 7 4.4677 -0.6461 -0.6510 8 6 5.7214 -1.1964 -0.6355 9 1 5.8405 -2.2697 -0.6556 10 6 6.8396 -0.3749 -0.5938 11 7 6.6946 0.9331 -0.5697 12 14 8.5500 -1.1255 -0.5732 13 1 8.4411 -2.6062 -0.6069 14 1 9.3102 -0.6576 -1.7599 15 1 9.2582 -0.7096 0.6640 16 6 2.8145 -1.8804 0.7342 17 7 2.0300 -0.7157 1.1829 18 6 1.8075 -0.3653 2.4651 19 8 1.1439 0.6177 2.7189 20 6 2.3834 -1.1950 3.5838 21 6 1.9916 -0.5930 4.9086 22 6 0.8284 -0.8616 5.5091 23 16 0.7771 0.0418 7.0209 24 6 2.3247 0.6915 6.6949 25 6 3.0642 1.6501 7.5923 26 6 2.4768 1.9149 8.9800 27 6 2.3954 2.9925 7.8958 28 7 2.7703 0.2374 5.5724 29 1 -0.3633 -1.0275 0.0181 30 1 -0.3634 0.5296 0.8806 31 1 -0.3633 0.4979 -0.8990 32 1 2.3529 -0.0432 -2.0202 33 1 1.3064 -1.4436 -1.6231 34 1 4.3608 0.3177 -0.6333 35 1 7.4759 1.5072 -0.5402 36 1 2.1886 -2.7724 0.7090 37 1 3.6715 -2.0358 1.3895 38 1 1.9969 -2.2120 3.5180 39 1 3.4700 -1.2130 3.5005 40 1 0.0565 -1.5173 5.1342 41 1 4.1501 1.6386 7.4992 42 1 1.5558 1.3954 9.2441 43 1 3.1764 2.0778 9.7998 44 1 3.0415 3.8638 8.0029 45 1 1.4208 3.1822 7.4461 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989526949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:59 Heat of formation + Delta-G solvation = 50.468947 kcal Electronic energy + Delta-G solvation = -26486.177920 eV Core-core repulsion = 22824.665555 eV Total energy + Delta-G solvation = -3661.512365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.31544 -39.43739 -37.56549 -37.02058 -33.96139 -32.40502 -31.34200 -31.04597 -28.47605 -27.96199 -25.69826 -25.44552 -23.75622 -22.74118 -22.44336 -21.20969 -20.10587 -19.67241 -18.55571 -17.64147 -17.29367 -16.73852 -16.29986 -15.88808 -15.22731 -14.71386 -14.57009 -14.30162 -14.11903 -13.87885 -13.58500 -13.40958 -13.17462 -12.92802 -12.73397 -12.45335 -12.19773 -12.09008 -11.91303 -11.77400 -11.63543 -11.27003 -11.13920 -11.03036 -10.94277 -10.82222 -10.76239 -10.62623 -10.29104 -9.99229 -9.72742 -9.61223 -9.50883 -9.32569 -9.03907 -8.62876 -8.19396 -7.03651 -5.81997 -3.12726 0.68504 1.31671 1.68892 2.67974 3.02580 3.40056 3.40819 3.45553 3.48618 3.62004 3.86237 4.50168 4.53502 4.65031 4.72357 4.82629 4.99001 5.12236 5.16769 5.24422 5.29652 5.31782 5.35291 5.50390 5.52947 5.55617 5.59761 5.68484 5.72692 5.77083 5.81410 5.87294 5.89155 5.99464 6.12503 6.21031 6.24807 6.41365 6.44468 6.60837 6.70560 6.84572 7.64475 7.81268 7.97883 8.34965 8.56679 9.46892 10.02344 10.36674 11.39919 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.003309 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.744691 B = 8458.657346 C =10208.218427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.139 3.861 3 H 0.072 0.928 4 C -0.138 4.138 5 C 0.169 3.831 6 H 0.072 0.928 7 N -0.712 5.712 8 C -0.248 4.248 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.927 5.927 12 Si 0.906 3.094 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.067 3.933 17 N -0.598 5.598 18 C 0.537 3.463 19 O -0.546 6.546 20 C -0.066 4.066 21 C 0.101 3.899 22 C -0.248 4.248 23 S 0.106 5.894 24 C 0.084 3.916 25 C -0.085 4.085 26 C -0.170 4.170 27 C -0.159 4.159 28 N -0.456 5.456 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.175 0.825 41 H 0.134 0.866 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.037 -3.702 14.099 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.091 0.909 4 C -0.177 4.177 5 C 0.056 3.944 6 H 0.090 0.910 7 N -0.352 5.352 8 C -0.379 4.379 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.574 5.574 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.060 4.060 17 N -0.331 5.331 18 C 0.324 3.676 19 O -0.424 6.424 20 C -0.109 4.109 21 C -0.030 4.030 22 C -0.386 4.386 23 S 0.361 5.639 24 C -0.194 4.194 25 C -0.106 4.106 26 C -0.208 4.208 27 C -0.198 4.198 28 N -0.170 5.170 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.192 0.808 41 H 0.152 0.848 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.431 -3.006 14.912 20.969 hybrid contribution 1.269 -0.458 -0.869 1.604 sum -13.163 -3.464 14.043 19.557 Atomic orbital electron populations 1.22124 0.95553 1.01622 1.02351 1.21446 0.93432 0.96733 0.84763 0.90943 1.23055 0.98225 1.00016 0.96412 1.21324 0.87027 0.94396 0.91613 0.90973 1.42348 1.00077 1.05229 1.87515 1.19258 0.83175 0.91818 1.43677 0.90903 1.24775 0.97961 0.95314 1.02435 1.69681 1.28961 1.02015 1.56716 0.86140 0.84761 0.78147 0.77229 1.20459 1.21826 1.21823 1.23431 0.94426 0.86868 1.01239 1.48360 1.51743 1.28689 1.04319 1.19814 0.80301 0.85169 0.82274 1.90661 1.40774 1.27641 1.83351 1.20182 1.04337 0.98783 0.87568 1.19480 0.90503 0.96193 0.96857 1.26682 1.03123 1.09512 0.99319 1.83608 1.19026 1.40334 1.20903 1.26001 0.95729 1.01813 0.95866 1.20419 0.99365 0.95800 0.95058 1.23146 1.03089 1.02923 0.91619 1.23153 1.02791 0.92162 1.01667 1.65911 1.34702 1.10824 1.05532 0.92939 0.91703 0.92102 0.89855 0.90771 0.78001 0.93415 0.92625 0.90164 0.87556 0.86653 0.80778 0.84823 0.88421 0.87300 0.87397 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.10 37.16 0.34 -1.91 16 2 C 0.14 2.31 3.45 -66.95 -0.23 2.08 16 3 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 4 C -0.14 -2.12 6.05 -24.90 -0.15 -2.27 16 5 C 0.17 3.05 3.70 -65.78 -0.24 2.81 16 6 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 7 N -0.71 -16.96 5.25 -51.34 -0.27 -17.23 16 8 C -0.25 -6.57 9.97 -15.06 -0.15 -6.72 16 9 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 10 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 11 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 12 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 C 0.07 1.08 6.39 -2.53 -0.02 1.06 16 17 N -0.60 -10.31 3.06 -163.02 -0.50 -10.81 16 18 C 0.54 9.77 7.64 -10.98 -0.08 9.68 16 19 O -0.55 -11.54 15.08 5.55 0.08 -11.46 16 20 C -0.07 -1.01 5.12 -29.03 -0.15 -1.16 16 21 C 0.10 1.61 5.23 -84.23 -0.44 1.17 16 22 C -0.25 -3.29 11.14 29.12 0.32 -2.97 16 23 S 0.11 1.23 21.94 -107.50 -2.36 -1.13 16 24 C 0.08 1.18 7.04 -13.46 -0.09 1.08 16 25 C -0.08 -0.94 6.33 -91.76 -0.58 -1.52 16 26 C -0.17 -1.33 10.02 -26.69 -0.27 -1.59 16 27 C -0.16 -1.44 10.24 -26.69 -0.27 -1.71 16 28 N -0.46 -7.81 10.53 -8.06 -0.08 -7.90 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.05 6.90 -51.93 -0.36 0.69 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 33 H 0.07 0.94 7.86 -51.93 -0.41 0.53 16 34 H 0.39 10.16 7.84 -40.82 -0.32 9.84 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.41 7.48 -51.93 -0.39 1.02 16 38 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.12 1.88 7.85 -51.93 -0.41 1.47 16 40 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.10 0.72 7.22 -51.93 -0.38 0.35 16 43 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 385.60 15.07 5.81 5.81 Total: -1.00 -33.58 385.60 -10.61 -44.19 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -6.87 Total: 10.95 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.11 Total: -2.28 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.13 Total: -63.00 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.36 Total: -1.13 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.58 -10.61 -44.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989526949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.655 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds