Wall clock time and date at job start Tue Mar 31 2020 19:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.87468 * 2 1 4 4 C 1.54325 * 109.88263 * 238.98100 * 2 1 3 5 5 C 1.55154 * 102.94404 * 218.38988 * 4 2 1 6 6 H 1.09002 * 111.00378 * 153.57794 * 5 4 2 7 7 N 1.46508 * 111.00515 * 277.39382 * 5 4 2 8 8 C 1.36928 * 119.99741 * 201.81950 * 7 5 4 9 9 H 1.08005 * 120.00561 * 0.02562 * 8 7 5 10 10 C 1.38816 * 120.00040 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99661 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00274 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46787 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47140 * 119.99604 * 12 10 8 15 15 H 1.48498 * 109.46702 * 239.99807 * 12 10 8 16 16 C 1.54914 * 101.58036 * 35.50280 * 5 4 2 17 17 N 1.47018 * 109.88163 * 121.17582 * 2 1 3 18 18 C 1.34775 * 125.64781 * 298.38135 * 17 2 1 19 19 O 1.21285 * 120.00298 * 359.97438 * 18 17 2 20 20 C 1.50708 * 119.99975 * 179.97438 * 18 17 2 21 21 C 1.50700 * 109.46859 * 179.97438 * 20 18 17 22 22 C 1.33629 * 122.75450 * 85.02555 * 21 20 18 23 23 S 1.76198 * 107.92981 * 179.97438 * 22 21 20 24 24 C 1.70977 * 90.27914 * 0.02562 * 23 22 21 25 25 C 1.50701 * 124.91360 * 180.02562 * 24 23 22 26 26 C 1.53005 * 117.49992 * 8.71613 * 25 24 23 27 27 C 1.53011 * 117.49606 * 300.05911 * 25 24 23 28 28 N 1.29027 * 110.16678 * 359.73253 * 24 23 22 29 29 H 1.09000 * 109.46918 * 181.01173 * 1 2 3 30 30 H 1.08997 * 109.47474 * 301.02094 * 1 2 3 31 31 H 1.08999 * 109.46984 * 61.02131 * 1 2 3 32 32 H 1.09011 * 110.71859 * 100.02630 * 4 2 1 33 33 H 1.09004 * 110.87491 * 336.82866 * 4 2 1 34 34 H 0.96995 * 119.99891 * 21.81742 * 7 5 4 35 35 H 0.97002 * 119.99869 * 179.97438 * 11 10 8 36 36 H 1.08998 * 110.36125 * 81.82698 * 16 5 4 37 37 H 1.08994 * 110.36786 * 204.14975 * 16 5 4 38 38 H 1.08991 * 109.47322 * 299.99640 * 20 18 17 39 39 H 1.08997 * 109.46897 * 60.00354 * 20 18 17 40 40 H 1.08001 * 126.03406 * 0.02562 * 22 21 20 41 41 H 1.08994 * 115.55085 * 154.39678 * 25 24 23 42 42 H 1.08991 * 117.49487 * 0.02562 * 26 25 24 43 43 H 1.08999 * 117.49132 * 145.02235 * 26 25 24 44 44 H 1.09004 * 117.49507 * 214.97728 * 27 25 24 45 45 H 1.08999 * 117.49747 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2437 5 6 3.2876 -1.5133 -0.6945 6 1 3.4852 -2.4093 -1.2829 7 7 4.4677 -0.6461 -0.6510 8 6 5.7214 -1.1964 -0.6355 9 1 5.8405 -2.2697 -0.6556 10 6 6.8396 -0.3749 -0.5938 11 7 6.6946 0.9331 -0.5697 12 14 8.5500 -1.1255 -0.5732 13 1 8.4411 -2.6062 -0.6069 14 1 9.3102 -0.6576 -1.7599 15 1 9.2582 -0.7096 0.6640 16 6 2.8145 -1.8804 0.7342 17 7 2.0300 -0.7157 1.1829 18 6 1.8075 -0.3653 2.4651 19 8 1.1439 0.6177 2.7189 20 6 2.3834 -1.1950 3.5838 21 6 1.9916 -0.5930 4.9086 22 6 0.8284 -0.8616 5.5091 23 16 0.7771 0.0418 7.0209 24 6 2.3247 0.6915 6.6949 25 6 3.0642 1.6501 7.5923 26 6 2.4768 1.9149 8.9800 27 6 2.3954 2.9925 7.8958 28 7 2.7703 0.2374 5.5724 29 1 -0.3633 -1.0275 0.0181 30 1 -0.3634 0.5296 0.8806 31 1 -0.3633 0.4979 -0.8990 32 1 2.3529 -0.0432 -2.0202 33 1 1.3064 -1.4436 -1.6231 34 1 4.3608 0.3177 -0.6333 35 1 7.4759 1.5072 -0.5402 36 1 2.1886 -2.7724 0.7090 37 1 3.6715 -2.0358 1.3895 38 1 1.9969 -2.2120 3.5180 39 1 3.4700 -1.2130 3.5005 40 1 0.0565 -1.5173 5.1342 41 1 4.1501 1.6386 7.4992 42 1 1.5558 1.3954 9.2441 43 1 3.1764 2.0778 9.7998 44 1 3.0415 3.8638 8.0029 45 1 1.4208 3.1822 7.4461 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989526949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:58 Heat of formation + Delta-G solvation = 28.861515 kcal Electronic energy + Delta-G solvation = -26487.114888 eV Core-core repulsion = 22824.665555 eV Total energy + Delta-G solvation = -3662.449334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.53770 -40.65491 -38.76672 -38.05442 -35.78639 -33.66420 -33.12582 -32.22815 -30.13235 -29.10893 -26.74699 -26.64679 -25.71437 -23.72613 -23.39047 -22.24379 -21.45077 -20.80407 -19.86904 -19.25438 -18.69525 -18.09428 -17.35870 -17.19766 -16.44415 -16.34471 -15.65637 -15.59059 -15.44073 -15.26888 -14.95882 -14.75999 -14.48802 -14.28148 -14.01914 -13.47568 -13.44692 -13.23106 -13.18425 -13.01640 -12.89844 -12.72252 -12.60419 -12.31585 -12.23342 -12.15120 -12.02197 -11.83501 -11.63492 -11.54698 -11.47969 -11.06791 -10.85580 -10.64904 -10.34296 -9.64864 -9.61101 -8.97437 -7.93480 -5.22470 -0.31972 0.35857 0.67256 1.47762 1.48678 1.54288 1.58194 1.65010 2.19954 2.56581 2.75951 3.01587 3.38440 3.53336 3.68654 3.76508 3.85679 3.92451 3.95648 3.98823 4.09748 4.14233 4.19225 4.36546 4.37846 4.40835 4.49526 4.66972 4.68438 4.70577 4.77645 4.80722 4.87855 4.95441 4.99562 5.08924 5.11803 5.12819 5.19041 5.24381 5.36024 5.52859 5.56201 6.27466 6.60717 6.79304 7.17594 7.33715 8.09287 8.30842 9.30343 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.003309 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.744691 B = 8458.657346 C =10208.218427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.134 3.866 3 H 0.032 0.968 4 C -0.122 4.122 5 C 0.155 3.845 6 H 0.091 0.909 7 N -0.728 5.728 8 C -0.232 4.232 9 H 0.088 0.912 10 C -0.079 4.079 11 N -0.973 5.973 12 Si 0.969 3.031 13 H -0.257 1.257 14 H -0.297 1.297 15 H -0.303 1.303 16 C 0.075 3.925 17 N -0.600 5.600 18 C 0.529 3.471 19 O -0.583 6.583 20 C -0.058 4.058 21 C 0.070 3.930 22 C -0.252 4.252 23 S 0.171 5.829 24 C 0.065 3.935 25 C -0.117 4.117 26 C -0.141 4.141 27 C -0.159 4.159 28 N -0.510 5.510 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.368 0.632 35 H 0.247 0.753 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.144 0.856 39 H 0.097 0.903 40 H 0.199 0.801 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.133 0.867 44 H 0.121 0.879 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.973 -6.202 14.959 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 H 0.050 0.950 4 C -0.160 4.160 5 C 0.045 3.955 6 H 0.109 0.891 7 N -0.366 5.366 8 C -0.364 4.364 9 H 0.106 0.894 10 C -0.271 4.271 11 N -0.624 5.624 12 Si 0.799 3.201 13 H -0.181 1.181 14 H -0.224 1.224 15 H -0.230 1.230 16 C -0.050 4.050 17 N -0.333 5.333 18 C 0.318 3.682 19 O -0.464 6.464 20 C -0.100 4.100 21 C -0.061 4.061 22 C -0.391 4.391 23 S 0.426 5.574 24 C -0.212 4.212 25 C -0.139 4.139 26 C -0.178 4.178 27 C -0.198 4.198 28 N -0.225 5.225 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.199 0.801 35 H 0.056 0.944 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.162 0.838 39 H 0.115 0.885 40 H 0.216 0.784 41 H 0.143 0.857 42 H 0.124 0.876 43 H 0.151 0.849 44 H 0.139 0.861 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.404 -5.586 15.765 23.428 hybrid contribution 1.750 0.319 -1.104 2.094 sum -14.654 -5.267 14.661 21.388 Atomic orbital electron populations 1.22001 0.93220 1.02886 1.02171 1.21510 0.95232 0.94926 0.85304 0.95010 1.22986 0.97724 1.00026 0.95290 1.21692 0.86094 0.94464 0.93236 0.89142 1.42582 1.01278 1.05038 1.87735 1.19732 0.84186 0.92396 1.40094 0.89401 1.25569 1.01715 0.95688 1.04103 1.69855 1.29181 1.03496 1.59873 0.85130 0.80375 0.78486 0.76140 1.18119 1.22439 1.23044 1.23365 0.94688 0.87946 0.98974 1.48495 1.51454 1.28970 1.04341 1.20366 0.79839 0.84966 0.83038 1.90629 1.42606 1.29215 1.83949 1.20168 1.02960 1.00182 0.86713 1.19607 0.91722 0.97379 0.97388 1.27063 1.02697 1.09406 0.99978 1.83238 1.16555 1.38502 1.19076 1.26512 0.97290 1.01894 0.95518 1.20567 0.99078 0.96970 0.97312 1.23280 1.03258 1.00743 0.90558 1.23251 1.02405 0.92079 1.02095 1.65920 1.36734 1.12556 1.07285 0.90703 0.94105 0.90167 0.90916 0.86559 0.80107 0.94419 0.87939 0.91867 0.83840 0.88505 0.78351 0.85694 0.87639 0.84914 0.86075 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.10 71.98 0.65 -3.20 16 2 C 0.13 4.37 3.45 45.34 0.16 4.53 16 3 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.12 -3.48 6.05 31.78 0.19 -3.29 16 5 C 0.15 5.31 3.70 46.38 0.17 5.49 16 6 H 0.09 2.82 8.11 -2.39 -0.02 2.80 16 7 N -0.73 -34.92 5.25 -316.35 -1.66 -36.58 16 8 C -0.23 -12.25 9.97 84.04 0.84 -11.41 16 9 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 10 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 11 N -0.97 -60.71 13.06 21.65 0.28 -60.42 16 12 Si 0.97 45.88 29.55 68.60 2.03 47.90 16 13 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 14 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 15 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 16 C 0.08 2.28 6.39 86.86 0.55 2.83 16 17 N -0.60 -20.33 3.06 -788.05 -2.42 -22.75 16 18 C 0.53 19.44 7.64 87.66 0.67 20.11 16 19 O -0.58 -25.40 15.08 -3.04 -0.05 -25.45 16 20 C -0.06 -1.79 5.12 29.10 0.15 -1.64 16 21 C 0.07 2.26 5.23 41.52 0.22 2.47 16 22 C -0.25 -6.42 11.14 66.77 0.74 -5.68 16 23 S 0.17 3.71 21.94 -56.49 -1.24 2.47 16 24 C 0.06 1.83 7.04 88.52 0.62 2.46 16 25 C -0.12 -2.60 6.33 -11.53 -0.07 -2.68 16 26 C -0.14 -1.93 10.02 30.62 0.31 -1.62 16 27 C -0.16 -2.76 10.24 30.62 0.31 -2.45 16 28 N -0.51 -18.14 10.53 -179.41 -1.89 -20.03 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.04 1.29 6.90 -2.39 -0.02 1.28 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.12 2.40 7.86 -2.39 -0.02 2.38 16 34 H 0.37 20.10 7.84 -92.71 -0.73 19.37 16 35 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.06 2.15 7.48 -2.39 -0.02 2.14 16 38 H 0.14 3.11 8.14 -2.39 -0.02 3.10 16 39 H 0.10 3.30 7.85 -2.39 -0.02 3.28 16 40 H 0.20 3.80 8.06 -2.91 -0.02 3.78 16 41 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 42 H 0.11 1.28 7.22 -2.39 -0.02 1.26 16 43 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 45 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -77.53 385.60 1.32 -76.21 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: 0.27 Total: 36.75 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 5.98 Total: 1.90 kcal Atomic # 7 Polarization: -134.10 SS G_CDS: -5.68 Total: -139.78 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.05 Total: -25.45 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.24 Total: 2.47 kcal Total: -77.53 1.32 -76.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989526949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.070 kcal (2) G-P(sol) polarization free energy of solvation -77.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds