Wall clock time and date at job start Tue Mar 31 2020 19:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.58267 * 2 1 4 4 C 1.53201 * 109.70089 * 120.34790 * 2 1 3 5 5 H 1.09003 * 109.49426 * 294.44754 * 4 2 1 6 6 N 1.46496 * 109.49430 * 54.51301 * 4 2 1 7 7 C 1.34776 * 119.99654 * 204.99780 * 6 4 2 8 8 O 1.21620 * 120.00115 * 0.02562 * 7 6 4 9 9 C 1.47257 * 119.99756 * 179.97438 * 7 6 4 10 10 N 1.29770 * 125.52172 * 180.02562 * 9 7 6 11 11 C 1.32597 * 116.75381 * 179.97438 * 10 9 7 12 12 C 1.34634 * 114.30539 * 359.95718 * 11 10 9 13 13 S 1.71621 * 109.60016 * 359.82125 * 12 11 10 14 14 C 1.51947 * 110.68291 * 180.02562 * 12 11 10 15 15 C 1.54233 * 104.85176 * 17.36999 * 14 12 11 16 16 C 1.52793 * 136.16178 * 179.87379 * 11 10 9 17 17 C 1.53038 * 109.30930 * 174.49544 * 4 2 1 18 18 C 1.53038 * 109.53862 * 298.63617 * 17 4 2 19 19 C 1.52761 * 109.38433 * 61.24078 * 18 17 4 20 20 N 1.46918 * 109.59057 * 239.70909 * 2 1 3 21 21 C 1.36938 * 120.63044 * 6.44411 * 20 2 1 22 22 H 1.07998 * 119.99819 * 330.55146 * 21 20 2 23 23 C 1.38806 * 120.00130 * 150.55380 * 21 20 2 24 24 N 1.31621 * 120.00299 * 344.40870 * 23 21 20 25 25 Si 1.86808 * 120.00000 * 164.40872 * 23 21 20 26 26 H 1.48503 * 109.46920 * 266.31692 * 25 23 21 27 27 H 1.48499 * 109.46842 * 26.31562 * 25 23 21 28 28 H 1.48499 * 109.46960 * 146.31757 * 25 23 21 29 29 H 1.08995 * 109.46585 * 180.28382 * 1 2 3 30 30 H 1.08999 * 109.47023 * 300.28964 * 1 2 3 31 31 H 1.09003 * 109.46372 * 60.28910 * 1 2 3 32 32 H 0.97001 * 120.00279 * 24.99823 * 6 4 2 33 33 H 1.09001 * 110.36364 * 136.21442 * 14 12 11 34 34 H 1.09001 * 110.36128 * 258.41442 * 14 12 11 35 35 H 1.08999 * 110.95525 * 91.61991 * 15 14 12 36 36 H 1.09002 * 110.94928 * 215.30567 * 15 14 12 37 37 H 1.09000 * 110.31367 * 281.38581 * 16 11 10 38 38 H 1.09001 * 110.31490 * 43.56619 * 16 11 10 39 39 H 1.08997 * 109.46213 * 58.65706 * 17 4 2 40 40 H 1.08996 * 109.45886 * 178.62976 * 17 4 2 41 41 H 1.09003 * 109.49759 * 181.32344 * 18 17 4 42 42 H 1.09003 * 109.49808 * 301.38384 * 18 17 4 43 43 H 1.09001 * 109.51243 * 185.70529 * 19 18 17 44 44 H 1.09003 * 109.43084 * 65.42740 * 19 18 17 45 45 H 0.97003 * 120.00183 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7287 1.2447 5 1 1.7688 -0.1670 2.1366 6 7 1.4566 -2.0682 1.3070 7 6 1.3362 -2.6970 2.4930 8 8 1.7170 -2.1522 3.5115 9 6 0.7427 -4.0432 2.5557 10 7 0.5752 -4.7438 3.6351 11 6 0.0204 -5.9395 3.4905 12 6 -0.2937 -6.2546 2.2199 13 16 0.1392 -4.9587 1.1814 14 6 -0.9223 -7.6362 2.1493 15 6 -1.3563 -7.9474 3.5962 16 6 -0.3683 -7.0930 4.4140 17 6 3.5706 -0.8441 1.1676 18 6 3.9603 -1.6607 -0.0667 19 6 3.4649 -0.9475 -1.3235 20 7 2.0227 -0.6981 -1.1952 21 6 1.1535 -1.1135 -2.1684 22 1 0.1387 -1.3771 -1.9094 23 6 1.5768 -1.1959 -3.4878 24 7 2.6884 -0.5979 -3.8610 25 14 0.5688 -2.1554 -4.7340 26 1 1.0853 -3.5448 -4.8239 27 1 -0.8527 -2.1825 -4.3052 28 1 0.6726 -1.5017 -6.0633 29 1 -0.3632 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8874 31 1 -0.3632 0.5094 -0.8926 32 1 1.1526 -2.5026 0.4947 33 1 -1.7884 -7.6255 1.4876 34 1 -0.1918 -8.3681 1.8049 35 1 -2.3839 -7.6293 3.7720 36 1 -1.2346 -9.0072 3.8202 37 1 0.5115 -7.6806 4.6764 38 1 -0.8514 -6.7113 5.3135 39 1 4.0071 0.1521 1.0966 40 1 3.9429 -1.3407 2.0636 41 1 5.0448 -1.7624 -0.1081 42 1 3.5042 -2.6490 -0.0080 43 1 3.6511 -1.5747 -2.1953 44 1 3.9913 0.0006 -1.4338 45 1 2.9843 -0.6557 -4.7829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993597116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:21 Heat of formation + Delta-G solvation = 32.794196 kcal Electronic energy + Delta-G solvation = -27388.202356 eV Core-core repulsion = 23725.923556 eV Total energy + Delta-G solvation = -3662.278800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.55694 -39.66142 -37.66798 -35.95303 -34.04276 -32.52590 -31.80049 -29.79638 -28.90680 -28.45569 -26.46021 -25.23239 -24.89108 -22.37828 -21.80384 -20.95157 -20.59369 -19.14908 -18.75348 -18.30508 -16.97320 -16.48166 -16.18952 -15.42262 -15.12918 -14.93132 -14.32328 -14.14740 -13.99060 -13.88419 -13.53051 -13.31573 -13.14546 -13.06881 -13.04523 -12.61415 -12.35128 -11.91060 -11.56519 -11.38481 -11.33933 -11.28309 -11.26413 -11.02142 -10.76951 -10.68245 -10.56655 -10.24570 -10.13239 -10.05782 -9.72800 -9.51146 -9.50123 -9.36227 -8.79921 -8.59184 -8.51203 -6.73344 -5.86218 -3.32174 0.25714 1.02865 1.62225 2.27753 2.97554 3.30835 3.33972 3.38275 3.39876 3.94770 4.16867 4.40431 4.56877 4.62177 4.92591 5.09171 5.24140 5.26283 5.28197 5.31589 5.41177 5.50305 5.52337 5.54565 5.62752 5.68510 5.78397 5.90306 5.93049 6.05188 6.17063 6.25627 6.36488 6.47994 6.56944 6.63279 6.72568 6.88036 6.89305 6.99613 7.33294 7.44308 7.61443 7.73331 7.81985 8.34272 8.37385 9.12881 9.75605 10.32775 11.21772 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.004063 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.743457 B = 6889.248921 C = 8324.586800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.159 3.841 3 H 0.044 0.956 4 C 0.135 3.865 5 H 0.082 0.918 6 N -0.689 5.689 7 C 0.590 3.410 8 O -0.514 6.514 9 C 0.011 3.989 10 N -0.398 5.398 11 C 0.031 3.969 12 C -0.262 4.262 13 S 0.207 5.793 14 C -0.038 4.038 15 C -0.116 4.116 16 C -0.039 4.039 17 C -0.123 4.123 18 C -0.141 4.141 19 C 0.171 3.829 20 N -0.587 5.587 21 C -0.259 4.259 22 H 0.071 0.929 23 C 0.009 3.991 24 N -0.898 5.898 25 Si 0.897 3.103 26 H -0.287 1.287 27 H -0.278 1.278 28 H -0.291 1.291 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.408 0.592 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.019 0.981 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.875 -12.059 10.746 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.052 3.948 3 H 0.062 0.938 4 C 0.029 3.971 5 H 0.100 0.900 6 N -0.341 5.341 7 C 0.371 3.629 8 O -0.389 6.389 9 C -0.267 4.267 10 N -0.113 5.113 11 C -0.105 4.105 12 C -0.385 4.385 13 S 0.465 5.535 14 C -0.078 4.078 15 C -0.155 4.155 16 C -0.079 4.079 17 C -0.161 4.161 18 C -0.181 4.181 19 C 0.046 3.954 20 N -0.311 5.311 21 C -0.389 4.389 22 H 0.088 0.912 23 C -0.190 4.190 24 N -0.541 5.541 25 Si 0.727 3.273 26 H -0.214 1.214 27 H -0.203 1.203 28 H -0.218 1.218 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.245 0.755 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.038 0.962 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.398 -11.112 10.658 16.316 hybrid contribution -0.593 -1.224 -0.478 1.442 sum -5.991 -12.336 10.180 17.079 Atomic orbital electron populations 1.21806 0.95553 1.01398 1.00764 1.20737 0.93423 0.94073 0.86588 0.93802 1.21694 0.93166 0.81761 1.00437 0.90003 1.45828 1.61452 1.18963 1.07898 1.16697 0.79249 0.82235 0.84737 1.90808 1.48832 1.65013 1.34248 1.27319 1.08005 1.00893 0.90460 1.65715 1.11804 1.04320 1.29501 1.21789 1.01582 0.92643 0.94534 1.26859 1.08987 1.04068 0.98553 1.84102 1.52568 1.06269 1.10572 1.20722 0.99877 0.88825 0.98375 1.22333 0.99476 1.00334 0.93360 1.20874 0.99435 0.90826 0.96757 1.21794 0.95081 1.00811 0.98440 1.22087 0.99171 0.99503 0.97314 1.20713 0.83135 0.97298 0.94290 1.44169 1.03165 1.64893 1.18827 1.19156 0.95127 1.38352 0.86232 0.91155 1.25087 0.97743 0.99272 0.96944 1.70027 1.23934 1.43360 1.16785 0.86365 0.79913 0.79859 0.81171 1.21415 1.20296 1.21779 0.92983 0.93992 0.91489 0.75529 0.90009 0.89357 0.90283 0.89410 0.89528 0.89869 0.91454 0.92895 0.93192 0.93016 0.89577 0.96248 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.74 37.16 0.29 -2.14 16 2 C 0.16 3.05 3.19 -67.60 -0.22 2.83 16 3 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.14 2.38 2.33 -67.81 -0.16 2.22 16 5 H 0.08 1.43 7.58 -51.93 -0.39 1.03 16 6 N -0.69 -11.89 3.46 -54.82 -0.19 -12.08 16 7 C 0.59 10.70 7.78 -12.60 -0.10 10.60 16 8 O -0.51 -10.73 16.73 5.26 0.09 -10.64 16 9 C 0.01 0.19 7.44 -14.76 -0.11 0.08 16 10 N -0.40 -6.72 10.58 -6.78 -0.07 -6.79 16 11 C 0.03 0.41 7.62 -82.49 -0.63 -0.21 16 12 C -0.26 -3.16 7.17 -34.97 -0.25 -3.41 16 13 S 0.21 2.80 22.30 -107.50 -2.40 0.41 16 14 C -0.04 -0.31 6.80 -26.62 -0.18 -0.49 16 15 C -0.12 -0.75 7.11 -25.51 -0.18 -0.93 16 16 C -0.04 -0.35 6.80 -26.26 -0.18 -0.53 16 17 C -0.12 -2.14 5.58 -26.69 -0.15 -2.29 16 18 C -0.14 -2.63 5.91 -26.83 -0.16 -2.79 16 19 C 0.17 3.79 5.26 -3.93 -0.02 3.77 16 20 N -0.59 -13.11 2.65 -165.03 -0.44 -13.54 16 21 C -0.26 -6.32 8.58 -15.06 -0.13 -6.45 16 22 H 0.07 1.66 6.23 -52.49 -0.33 1.33 16 23 C 0.01 0.23 4.94 -17.43 -0.09 0.15 16 24 N -0.90 -24.50 11.23 55.49 0.62 -23.87 16 25 Si 0.90 20.29 29.58 -169.99 -5.03 15.26 16 26 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H 0.05 0.91 6.40 -51.93 -0.33 0.58 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.26 7.63 -51.93 -0.40 0.87 16 32 H 0.41 7.08 6.92 -40.82 -0.28 6.80 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.98 7.53 -51.93 -0.39 0.59 16 43 H 0.09 2.15 6.14 -51.93 -0.32 1.83 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 366.54 15.07 5.52 5.52 Total: -1.00 -30.05 366.54 -10.80 -40.84 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.65 Total: 4.48 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.26 Total: 0.41 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.08 Total: -56.29 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.40 Total: 0.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.05 -10.80 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993597116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.637 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds