Wall clock time and date at job start Tue Mar 31 2020 19:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.58267 * 2 1 4 4 C 1.53201 * 109.70089 * 120.34790 * 2 1 3 5 5 H 1.09003 * 109.49426 * 294.44754 * 4 2 1 6 6 N 1.46496 * 109.49430 * 54.51301 * 4 2 1 7 7 C 1.34776 * 119.99654 * 204.99780 * 6 4 2 8 8 O 1.21620 * 120.00115 * 0.02562 * 7 6 4 9 9 C 1.47257 * 119.99756 * 179.97438 * 7 6 4 10 10 N 1.29770 * 125.52172 * 180.02562 * 9 7 6 11 11 C 1.32597 * 116.75381 * 179.97438 * 10 9 7 12 12 C 1.34634 * 114.30539 * 359.95718 * 11 10 9 13 13 S 1.71621 * 109.60016 * 359.82125 * 12 11 10 14 14 C 1.51947 * 110.68291 * 180.02562 * 12 11 10 15 15 C 1.54233 * 104.85176 * 17.36999 * 14 12 11 16 16 C 1.52793 * 136.16178 * 179.87379 * 11 10 9 17 17 C 1.53038 * 109.30930 * 174.49544 * 4 2 1 18 18 C 1.53038 * 109.53862 * 298.63617 * 17 4 2 19 19 C 1.52761 * 109.38433 * 61.24078 * 18 17 4 20 20 N 1.46918 * 109.59057 * 239.70909 * 2 1 3 21 21 C 1.36938 * 120.63044 * 6.44411 * 20 2 1 22 22 H 1.07998 * 119.99819 * 330.55146 * 21 20 2 23 23 C 1.38806 * 120.00130 * 150.55380 * 21 20 2 24 24 N 1.31621 * 120.00299 * 344.40870 * 23 21 20 25 25 Si 1.86808 * 120.00000 * 164.40872 * 23 21 20 26 26 H 1.48503 * 109.46920 * 266.31692 * 25 23 21 27 27 H 1.48499 * 109.46842 * 26.31562 * 25 23 21 28 28 H 1.48499 * 109.46960 * 146.31757 * 25 23 21 29 29 H 1.08995 * 109.46585 * 180.28382 * 1 2 3 30 30 H 1.08999 * 109.47023 * 300.28964 * 1 2 3 31 31 H 1.09003 * 109.46372 * 60.28910 * 1 2 3 32 32 H 0.97001 * 120.00279 * 24.99823 * 6 4 2 33 33 H 1.09001 * 110.36364 * 136.21442 * 14 12 11 34 34 H 1.09001 * 110.36128 * 258.41442 * 14 12 11 35 35 H 1.08999 * 110.95525 * 91.61991 * 15 14 12 36 36 H 1.09002 * 110.94928 * 215.30567 * 15 14 12 37 37 H 1.09000 * 110.31367 * 281.38581 * 16 11 10 38 38 H 1.09001 * 110.31490 * 43.56619 * 16 11 10 39 39 H 1.08997 * 109.46213 * 58.65706 * 17 4 2 40 40 H 1.08996 * 109.45886 * 178.62976 * 17 4 2 41 41 H 1.09003 * 109.49759 * 181.32344 * 18 17 4 42 42 H 1.09003 * 109.49808 * 301.38384 * 18 17 4 43 43 H 1.09001 * 109.51243 * 185.70529 * 19 18 17 44 44 H 1.09003 * 109.43084 * 65.42740 * 19 18 17 45 45 H 0.97003 * 120.00183 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7287 1.2447 5 1 1.7688 -0.1670 2.1366 6 7 1.4566 -2.0682 1.3070 7 6 1.3362 -2.6970 2.4930 8 8 1.7170 -2.1522 3.5115 9 6 0.7427 -4.0432 2.5557 10 7 0.5752 -4.7438 3.6351 11 6 0.0204 -5.9395 3.4905 12 6 -0.2937 -6.2546 2.2199 13 16 0.1392 -4.9587 1.1814 14 6 -0.9223 -7.6362 2.1493 15 6 -1.3563 -7.9474 3.5962 16 6 -0.3683 -7.0930 4.4140 17 6 3.5706 -0.8441 1.1676 18 6 3.9603 -1.6607 -0.0667 19 6 3.4649 -0.9475 -1.3235 20 7 2.0227 -0.6981 -1.1952 21 6 1.1535 -1.1135 -2.1684 22 1 0.1387 -1.3771 -1.9094 23 6 1.5768 -1.1959 -3.4878 24 7 2.6884 -0.5979 -3.8610 25 14 0.5688 -2.1554 -4.7340 26 1 1.0853 -3.5448 -4.8239 27 1 -0.8527 -2.1825 -4.3052 28 1 0.6726 -1.5017 -6.0633 29 1 -0.3632 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8874 31 1 -0.3632 0.5094 -0.8926 32 1 1.1526 -2.5026 0.4947 33 1 -1.7884 -7.6255 1.4876 34 1 -0.1918 -8.3681 1.8049 35 1 -2.3839 -7.6293 3.7720 36 1 -1.2346 -9.0072 3.8202 37 1 0.5115 -7.6806 4.6764 38 1 -0.8514 -6.7113 5.3135 39 1 4.0071 0.1521 1.0966 40 1 3.9429 -1.3407 2.0636 41 1 5.0448 -1.7624 -0.1081 42 1 3.5042 -2.6490 -0.0080 43 1 3.6511 -1.5747 -2.1953 44 1 3.9913 0.0006 -1.4338 45 1 2.9843 -0.6557 -4.7829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993597116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:20 Heat of formation + Delta-G solvation = 15.403212 kcal Electronic energy + Delta-G solvation = -27388.956486 eV Core-core repulsion = 23725.923556 eV Total energy + Delta-G solvation = -3663.032930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.66315 -40.98311 -39.18738 -36.84942 -35.69620 -34.12995 -33.46293 -31.42367 -29.72893 -29.42159 -27.95907 -26.88456 -26.18612 -23.83421 -22.87981 -22.39922 -21.81767 -20.53072 -20.01908 -19.39840 -18.24323 -18.17534 -17.16128 -16.97883 -16.52769 -16.37309 -15.77494 -15.60243 -15.24302 -15.11279 -14.91047 -14.63429 -14.43621 -14.30655 -14.23384 -13.77506 -13.56990 -13.04196 -12.97423 -12.90609 -12.71755 -12.47069 -12.32466 -12.29110 -12.20627 -12.14026 -11.92312 -11.89765 -11.68868 -11.55455 -11.40162 -11.05126 -10.71726 -10.54146 -10.48159 -10.16826 -9.63778 -8.60513 -7.80121 -5.27070 -0.84966 -0.03366 0.57376 1.15647 1.50985 1.53618 1.60580 1.72199 2.05171 2.55319 2.96480 3.36389 3.45092 3.58491 3.59790 3.94183 3.99899 4.02742 4.13386 4.17734 4.37275 4.38686 4.49904 4.53871 4.65108 4.71622 4.73924 4.80855 4.86675 4.93644 4.97465 5.00237 5.08251 5.09416 5.16355 5.19495 5.29278 5.32935 5.40998 5.49237 5.57658 5.75872 5.80536 6.23981 6.45807 6.55110 6.95917 7.21261 7.90372 8.43916 9.26668 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.004063 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.743457 B = 6889.248921 C = 8324.586800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.158 3.842 3 H 0.041 0.959 4 C 0.142 3.858 5 H 0.088 0.912 6 N -0.683 5.683 7 C 0.594 3.406 8 O -0.550 6.550 9 C -0.030 4.030 10 N -0.426 5.426 11 C 0.003 3.997 12 C -0.247 4.247 13 S 0.226 5.774 14 C -0.041 4.041 15 C -0.103 4.103 16 C -0.041 4.041 17 C -0.117 4.117 18 C -0.128 4.128 19 C 0.180 3.820 20 N -0.597 5.597 21 C -0.250 4.250 22 H 0.080 0.920 23 C -0.044 4.044 24 N -0.933 5.933 25 Si 0.953 3.047 26 H -0.287 1.287 27 H -0.264 1.264 28 H -0.304 1.304 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.408 0.592 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.056 0.944 44 H -0.001 1.001 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.635 -14.581 11.641 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.051 3.949 3 H 0.059 0.941 4 C 0.036 3.964 5 H 0.106 0.894 6 N -0.335 5.335 7 C 0.377 3.623 8 O -0.428 6.428 9 C -0.305 4.305 10 N -0.143 5.143 11 C -0.133 4.133 12 C -0.370 4.370 13 S 0.483 5.517 14 C -0.081 4.081 15 C -0.142 4.142 16 C -0.080 4.080 17 C -0.156 4.156 18 C -0.168 4.168 19 C 0.054 3.946 20 N -0.321 5.321 21 C -0.380 4.380 22 H 0.098 0.902 23 C -0.240 4.240 24 N -0.579 5.579 25 Si 0.783 3.217 26 H -0.214 1.214 27 H -0.189 1.189 28 H -0.231 1.231 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.245 0.755 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.017 0.983 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.179 -13.632 11.571 19.268 hybrid contribution -0.088 -0.503 -0.712 0.876 sum -7.267 -14.135 10.858 19.249 Atomic orbital electron populations 1.21739 0.94238 1.01614 1.01264 1.20852 0.94533 0.93729 0.85782 0.94129 1.21559 0.93219 0.82006 0.99627 0.89377 1.45737 1.61250 1.18706 1.07785 1.16882 0.78503 0.82798 0.84142 1.90770 1.50559 1.66250 1.35218 1.26900 1.10740 1.00961 0.91947 1.65695 1.12294 1.05857 1.30434 1.22548 1.01743 0.92543 0.96495 1.27551 1.06872 1.05049 0.97503 1.83946 1.51823 1.06479 1.09459 1.21037 1.00669 0.86341 1.00037 1.22389 0.98947 1.01614 0.91289 1.21114 1.00636 0.89686 0.96599 1.21748 0.95035 1.01104 0.97681 1.21911 0.99984 0.98888 0.95976 1.20484 0.83297 0.95977 0.94808 1.44345 1.03019 1.65445 1.19340 1.19481 0.95527 1.36510 0.86450 0.90238 1.25736 0.98857 1.00707 0.98701 1.70177 1.25776 1.45474 1.16516 0.85460 0.79364 0.78350 0.78570 1.21406 1.18858 1.23117 0.92888 0.91564 0.92875 0.75534 0.88339 0.87483 0.89569 0.86255 0.88457 0.89667 0.90540 0.92651 0.91674 0.93350 0.92604 0.98318 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 7.74 71.98 0.56 -3.92 16 2 C 0.16 5.96 3.19 44.98 0.14 6.10 16 3 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 4 C 0.14 4.90 2.33 45.07 0.10 5.00 16 5 H 0.09 3.00 7.58 -2.39 -0.02 2.98 16 6 N -0.68 -23.35 3.46 -445.59 -1.54 -24.89 16 7 C 0.59 21.65 7.78 86.61 0.67 22.33 16 8 O -0.55 -23.26 16.73 -4.09 -0.07 -23.33 16 9 C -0.03 -0.99 7.44 87.37 0.65 -0.34 16 10 N -0.43 -14.33 10.58 -175.37 -1.86 -16.19 16 11 C 0.00 0.06 7.62 42.29 0.32 0.39 16 12 C -0.25 -5.38 7.17 25.26 0.18 -5.20 16 13 S 0.23 5.84 22.30 -56.49 -1.26 4.58 16 14 C -0.04 -0.49 6.80 30.67 0.21 -0.29 16 15 C -0.10 -0.89 7.11 31.39 0.22 -0.66 16 16 C -0.04 -0.63 6.80 30.90 0.21 -0.42 16 17 C -0.12 -4.01 5.58 30.62 0.17 -3.84 16 18 C -0.13 -4.75 5.91 30.53 0.18 -4.57 16 19 C 0.18 8.14 5.26 86.22 0.45 8.59 16 20 N -0.60 -26.80 2.65 -676.05 -1.79 -28.59 16 21 C -0.25 -12.14 8.58 84.03 0.72 -11.42 16 22 H 0.08 3.67 6.23 -2.91 -0.02 3.66 16 23 C -0.04 -2.29 4.94 84.86 0.42 -1.87 16 24 N -0.93 -52.30 11.23 21.65 0.24 -52.06 16 25 Si 0.95 41.87 29.58 68.60 2.03 43.90 16 26 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 28 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 29 H 0.05 1.78 6.40 -2.39 -0.02 1.77 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.95 7.63 -2.39 -0.02 1.94 16 32 H 0.41 13.98 6.92 -92.71 -0.64 13.34 16 33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.05 1.82 7.53 -2.39 -0.02 1.80 16 43 H 0.06 2.88 6.14 -2.39 -0.01 2.86 16 44 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -66.73 366.54 1.35 -65.39 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.37 Total: 21.31 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 5.22 Total: 9.88 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -4.95 Total: -121.73 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.07 Total: -23.33 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 5.84 SS G_CDS: -1.26 Total: 4.58 kcal Total: -66.73 1.35 -65.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993597116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.789 kcal (2) G-P(sol) polarization free energy of solvation -66.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds