Wall clock time and date at job start Tue Mar 31 2020 19:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.69666 * 2 1 4 4 C 1.53189 * 109.59264 * 120.35708 * 2 1 3 5 5 H 1.09005 * 109.52060 * 54.45625 * 4 2 1 6 6 N 1.46497 * 109.49865 * 294.37743 * 4 2 1 7 7 C 1.34778 * 120.00037 * 155.15901 * 6 4 2 8 8 O 1.21621 * 119.99829 * 0.02562 * 7 6 4 9 9 C 1.47258 * 119.99994 * 179.97438 * 7 6 4 10 10 N 1.29764 * 125.52679 * 180.02562 * 9 7 6 11 11 C 1.32593 * 116.75443 * 180.02562 * 10 9 7 12 12 C 1.34628 * 114.30935 * 359.95893 * 11 10 9 13 13 S 1.71623 * 109.59989 * 0.05108 * 12 11 10 14 14 C 1.51947 * 110.68299 * 180.10147 * 12 11 10 15 15 C 1.54225 * 104.84974 * 17.38038 * 14 12 11 16 16 C 1.52792 * 136.15388 * 179.97438 * 11 10 9 17 17 C 1.53039 * 109.31498 * 174.42113 * 4 2 1 18 18 C 1.53037 * 109.54065 * 298.63948 * 17 4 2 19 19 C 1.53194 * 109.31535 * 61.36049 * 18 17 4 20 20 N 1.46921 * 108.77629 * 305.37119 * 19 18 17 21 21 C 1.36940 * 120.63223 * 233.58417 * 20 19 18 22 22 H 1.07998 * 120.00588 * 150.16189 * 21 20 19 23 23 C 1.38820 * 119.99622 * 330.16844 * 21 20 19 24 24 N 1.31619 * 119.99924 * 344.49252 * 23 21 20 25 25 Si 1.86797 * 120.00059 * 164.48878 * 23 21 20 26 26 H 1.48506 * 109.47085 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46966 * 119.99647 * 25 23 21 28 28 H 1.48493 * 109.47487 * 240.00251 * 25 23 21 29 29 H 1.09003 * 109.47272 * 299.63533 * 1 2 3 30 30 H 1.08993 * 109.47819 * 59.64396 * 1 2 3 31 31 H 1.09011 * 109.46927 * 179.64222 * 1 2 3 32 32 H 0.96997 * 120.00113 * 335.15736 * 6 4 2 33 33 H 1.08999 * 110.36286 * 136.24020 * 14 12 11 34 34 H 1.08994 * 110.36320 * 258.44459 * 14 12 11 35 35 H 1.09010 * 110.95513 * 215.34246 * 15 14 12 36 36 H 1.09000 * 110.94007 * 91.62872 * 15 14 12 37 37 H 1.09009 * 110.31424 * 281.32764 * 16 11 10 38 38 H 1.08992 * 110.31868 * 43.51082 * 16 11 10 39 39 H 1.09003 * 109.45747 * 58.65786 * 17 4 2 40 40 H 1.09000 * 109.46225 * 178.62715 * 17 4 2 41 41 H 1.09003 * 109.50018 * 181.31558 * 18 17 4 42 42 H 1.09002 * 109.49753 * 301.38048 * 18 17 4 43 43 H 1.09004 * 109.58342 * 65.15644 * 19 18 17 44 44 H 1.08990 * 109.58930 * 185.57472 * 19 18 17 45 45 H 0.96998 * 120.00071 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8973 1.0263 0.0000 4 6 2.0436 -0.7294 1.2453 5 1 1.6031 -1.7254 1.2918 6 7 1.6706 0.0266 2.4435 7 6 1.5505 -0.6045 3.6283 8 8 1.7523 -1.8016 3.7028 9 6 1.1761 0.1555 4.8327 10 7 1.0313 -0.3410 6.0228 11 6 0.6886 0.5048 6.9848 12 6 0.5398 1.7787 6.5756 13 16 0.8525 1.8826 4.8913 14 6 0.1508 2.6744 7.7397 15 6 0.5106 1.8623 9.0006 16 6 0.4090 0.4138 8.4841 17 6 3.5675 -0.8479 1.1699 18 6 3.9569 -1.6655 -0.0637 19 6 3.4650 -0.9468 -1.3239 20 7 2.0225 -0.6994 -1.1946 21 6 1.1536 -1.1125 -2.1690 22 1 0.1396 -1.3798 -1.9106 23 6 1.5761 -1.1878 -3.4892 24 7 2.6868 -0.5868 -3.8600 25 14 0.5685 -2.1423 -4.7394 26 1 -0.6271 -2.7200 -4.0744 27 1 0.1360 -1.2290 -5.8276 28 1 1.3949 -3.2360 -5.3101 29 1 -0.3634 0.5082 0.8932 30 1 -0.3634 0.5193 -0.8867 31 1 -0.3633 -1.0278 -0.0064 32 1 1.5101 0.9813 2.3841 33 1 0.7209 3.6029 7.7109 34 1 -0.9182 2.8855 7.7151 35 1 -0.2091 2.0430 9.7992 36 1 1.5240 2.0874 9.3329 37 1 -0.5920 0.0190 8.6591 38 1 1.1548 -0.2147 8.9708 39 1 4.0061 0.1475 1.0992 40 1 3.9379 -1.3450 2.0665 41 1 5.0413 -1.7694 -0.1040 42 1 3.4989 -2.6529 -0.0053 43 1 3.9902 0.0023 -1.4319 44 1 3.6518 -1.5714 -2.1973 45 1 2.9819 -0.6391 -4.7825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993597117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:24 Heat of formation + Delta-G solvation = 32.234155 kcal Electronic energy + Delta-G solvation = -26599.558669 eV Core-core repulsion = 22937.255584 eV Total energy + Delta-G solvation = -3662.303085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.71899 -39.67880 -37.69985 -36.11572 -34.42609 -32.63797 -31.74450 -29.75758 -29.03787 -28.52399 -26.45476 -25.31242 -24.82717 -22.51813 -21.81804 -20.76155 -20.57413 -19.74951 -18.86602 -18.56167 -17.05522 -16.43468 -16.32660 -15.69926 -15.19030 -14.90036 -14.49320 -14.26816 -13.95261 -13.78589 -13.65935 -13.54987 -13.36359 -13.26367 -12.82917 -12.58738 -12.48344 -11.76119 -11.69936 -11.58807 -11.53154 -11.45640 -11.14766 -10.95065 -10.77927 -10.60818 -10.45548 -10.33301 -10.13581 -10.04698 -9.82135 -9.70857 -9.63459 -9.41616 -8.93826 -8.73609 -8.48238 -6.69710 -5.81785 -3.26639 0.07552 0.81839 1.40041 2.12097 2.76601 3.17938 3.36210 3.44723 3.46569 3.76552 4.01892 4.38863 4.48279 4.49797 4.71502 4.95278 5.09810 5.18352 5.25868 5.28162 5.35141 5.39975 5.47404 5.49267 5.54531 5.66384 5.74094 5.77537 5.92425 6.01596 6.17372 6.28589 6.36896 6.48482 6.52861 6.65534 6.72772 6.79578 6.94402 7.01790 7.26292 7.37570 7.57838 7.64700 7.80644 8.15534 8.42519 9.17792 9.80047 10.36458 11.26980 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027233 B = 0.002529 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.923907 B =11070.214299 C =11353.473720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.168 3.832 3 H 0.030 0.970 4 C 0.132 3.868 5 H 0.092 0.908 6 N -0.706 5.706 7 C 0.592 3.408 8 O -0.499 6.499 9 C 0.016 3.984 10 N -0.396 5.396 11 C 0.034 3.966 12 C -0.257 4.257 13 S 0.188 5.812 14 C -0.038 4.038 15 C -0.116 4.116 16 C -0.041 4.041 17 C -0.119 4.119 18 C -0.140 4.140 19 C 0.169 3.831 20 N -0.581 5.581 21 C -0.253 4.253 22 H 0.071 0.929 23 C 0.005 3.995 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.289 1.289 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.395 0.605 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.088 0.912 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.419 9.175 22.691 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.060 3.940 3 H 0.047 0.953 4 C 0.027 3.973 5 H 0.110 0.890 6 N -0.358 5.358 7 C 0.373 3.627 8 O -0.373 6.373 9 C -0.262 4.262 10 N -0.111 5.111 11 C -0.101 4.101 12 C -0.380 4.380 13 S 0.445 5.555 14 C -0.078 4.078 15 C -0.155 4.155 16 C -0.081 4.081 17 C -0.158 4.158 18 C -0.180 4.180 19 C 0.044 3.956 20 N -0.304 5.304 21 C -0.382 4.382 22 H 0.089 0.911 23 C -0.194 4.194 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.215 1.215 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.229 0.771 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.106 0.894 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.107 8.507 21.769 23.578 hybrid contribution -0.577 -0.245 0.125 0.639 sum -3.683 8.262 21.894 23.689 Atomic orbital electron populations 1.21840 0.95540 1.01910 1.00303 1.20562 0.93343 0.93619 0.86503 0.95279 1.21965 0.95516 0.96937 0.82886 0.89042 1.45965 1.69876 1.12116 1.07824 1.16672 0.78439 0.86474 0.81161 1.90860 1.48646 1.13386 1.84373 1.27346 1.09258 0.93368 0.96263 1.65697 1.10706 1.36482 0.98192 1.21820 1.03111 0.87487 0.97721 1.26783 1.09235 1.02128 0.99829 1.83666 1.61025 1.09814 1.01008 1.20731 1.01922 0.96707 0.88408 1.22342 1.03013 0.93413 0.96752 1.20907 1.03058 0.97982 0.86113 1.21790 0.94979 1.00340 0.98646 1.22188 0.99380 0.99732 0.96668 1.20844 0.83056 0.97248 0.94469 1.44038 1.03191 1.65080 1.18096 1.19201 0.95219 1.37824 0.85951 0.91116 1.25093 0.97880 0.99428 0.96992 1.70034 1.24080 1.43693 1.16703 0.86239 0.79661 0.79578 0.81393 1.20193 1.21748 1.21539 0.94359 0.91549 0.92483 0.77140 0.89991 0.89296 0.89302 0.90217 0.89366 0.89733 0.92521 0.92967 0.92834 0.92380 0.96163 0.89394 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 7.84 37.15 0.29 -2.22 16 2 C 0.17 3.29 3.03 -67.60 -0.20 3.09 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 4 C 0.13 2.37 1.99 -67.81 -0.14 2.23 16 5 H 0.09 1.88 7.58 -51.93 -0.39 1.48 16 6 N -0.71 -10.64 4.57 -54.82 -0.25 -10.89 16 7 C 0.59 9.88 7.77 -12.59 -0.10 9.78 16 8 O -0.50 -10.28 16.73 5.26 0.09 -10.19 16 9 C 0.02 0.24 7.44 -14.76 -0.11 0.13 16 10 N -0.40 -6.09 10.58 -6.78 -0.07 -6.16 16 11 C 0.03 0.41 7.62 -82.50 -0.63 -0.22 16 12 C -0.26 -2.53 7.17 -34.97 -0.25 -2.78 16 13 S 0.19 1.93 22.30 -107.50 -2.40 -0.46 16 14 C -0.04 -0.23 6.80 -26.63 -0.18 -0.41 16 15 C -0.12 -0.57 7.11 -25.50 -0.18 -0.75 16 16 C -0.04 -0.31 6.80 -26.25 -0.18 -0.49 16 17 C -0.12 -2.12 5.46 -26.69 -0.15 -2.26 16 18 C -0.14 -2.72 6.08 -26.61 -0.16 -2.88 16 19 C 0.17 3.93 5.28 -3.71 -0.02 3.91 16 20 N -0.58 -13.87 2.99 -164.78 -0.49 -14.36 16 21 C -0.25 -6.60 8.58 -15.05 -0.13 -6.73 16 22 H 0.07 1.82 6.23 -52.49 -0.33 1.49 16 23 C 0.00 0.13 4.94 -17.43 -0.09 0.05 16 24 N -0.90 -25.42 11.23 55.49 0.62 -24.79 16 25 Si 0.90 21.34 29.58 -169.99 -5.03 16.31 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 29 H 0.04 0.57 7.79 -51.93 -0.40 0.17 16 30 H 0.07 1.28 7.67 -51.93 -0.40 0.88 16 31 H 0.06 1.09 7.40 -51.92 -0.38 0.71 16 32 H 0.39 4.89 7.74 -40.82 -0.32 4.58 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.25 8.14 -51.92 -0.42 -0.17 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 2.29 6.15 -51.93 -0.32 1.97 16 45 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -32.19 369.79 -10.93 -43.12 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.75 Total: 1.44 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.22 Total: 0.42 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.19 Total: -56.20 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.40 Total: -0.46 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.19 -10.93 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993597117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.351 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds