Wall clock time and date at job start Tue Mar 31 2020 19:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.69666 * 2 1 4 4 C 1.53189 * 109.59264 * 120.35708 * 2 1 3 5 5 H 1.09005 * 109.52060 * 54.45625 * 4 2 1 6 6 N 1.46497 * 109.49865 * 294.37743 * 4 2 1 7 7 C 1.34778 * 120.00037 * 155.15901 * 6 4 2 8 8 O 1.21621 * 119.99829 * 0.02562 * 7 6 4 9 9 C 1.47258 * 119.99994 * 179.97438 * 7 6 4 10 10 N 1.29764 * 125.52679 * 180.02562 * 9 7 6 11 11 C 1.32593 * 116.75443 * 180.02562 * 10 9 7 12 12 C 1.34628 * 114.30935 * 359.95893 * 11 10 9 13 13 S 1.71623 * 109.59989 * 0.05108 * 12 11 10 14 14 C 1.51947 * 110.68299 * 180.10147 * 12 11 10 15 15 C 1.54225 * 104.84974 * 17.38038 * 14 12 11 16 16 C 1.52792 * 136.15388 * 179.97438 * 11 10 9 17 17 C 1.53039 * 109.31498 * 174.42113 * 4 2 1 18 18 C 1.53037 * 109.54065 * 298.63948 * 17 4 2 19 19 C 1.53194 * 109.31535 * 61.36049 * 18 17 4 20 20 N 1.46921 * 108.77629 * 305.37119 * 19 18 17 21 21 C 1.36940 * 120.63223 * 233.58417 * 20 19 18 22 22 H 1.07998 * 120.00588 * 150.16189 * 21 20 19 23 23 C 1.38820 * 119.99622 * 330.16844 * 21 20 19 24 24 N 1.31619 * 119.99924 * 344.49252 * 23 21 20 25 25 Si 1.86797 * 120.00059 * 164.48878 * 23 21 20 26 26 H 1.48506 * 109.47085 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46966 * 119.99647 * 25 23 21 28 28 H 1.48493 * 109.47487 * 240.00251 * 25 23 21 29 29 H 1.09003 * 109.47272 * 299.63533 * 1 2 3 30 30 H 1.08993 * 109.47819 * 59.64396 * 1 2 3 31 31 H 1.09011 * 109.46927 * 179.64222 * 1 2 3 32 32 H 0.96997 * 120.00113 * 335.15736 * 6 4 2 33 33 H 1.08999 * 110.36286 * 136.24020 * 14 12 11 34 34 H 1.08994 * 110.36320 * 258.44459 * 14 12 11 35 35 H 1.09010 * 110.95513 * 215.34246 * 15 14 12 36 36 H 1.09000 * 110.94007 * 91.62872 * 15 14 12 37 37 H 1.09009 * 110.31424 * 281.32764 * 16 11 10 38 38 H 1.08992 * 110.31868 * 43.51082 * 16 11 10 39 39 H 1.09003 * 109.45747 * 58.65786 * 17 4 2 40 40 H 1.09000 * 109.46225 * 178.62715 * 17 4 2 41 41 H 1.09003 * 109.50018 * 181.31558 * 18 17 4 42 42 H 1.09002 * 109.49753 * 301.38048 * 18 17 4 43 43 H 1.09004 * 109.58342 * 65.15644 * 19 18 17 44 44 H 1.08990 * 109.58930 * 185.57472 * 19 18 17 45 45 H 0.96998 * 120.00071 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8973 1.0263 0.0000 4 6 2.0436 -0.7294 1.2453 5 1 1.6031 -1.7254 1.2918 6 7 1.6706 0.0266 2.4435 7 6 1.5505 -0.6045 3.6283 8 8 1.7523 -1.8016 3.7028 9 6 1.1761 0.1555 4.8327 10 7 1.0313 -0.3410 6.0228 11 6 0.6886 0.5048 6.9848 12 6 0.5398 1.7787 6.5756 13 16 0.8525 1.8826 4.8913 14 6 0.1508 2.6744 7.7397 15 6 0.5106 1.8623 9.0006 16 6 0.4090 0.4138 8.4841 17 6 3.5675 -0.8479 1.1699 18 6 3.9569 -1.6655 -0.0637 19 6 3.4650 -0.9468 -1.3239 20 7 2.0225 -0.6994 -1.1946 21 6 1.1536 -1.1125 -2.1690 22 1 0.1396 -1.3798 -1.9106 23 6 1.5761 -1.1878 -3.4892 24 7 2.6868 -0.5868 -3.8600 25 14 0.5685 -2.1423 -4.7394 26 1 -0.6271 -2.7200 -4.0744 27 1 0.1360 -1.2290 -5.8276 28 1 1.3949 -3.2360 -5.3101 29 1 -0.3634 0.5082 0.8932 30 1 -0.3634 0.5193 -0.8867 31 1 -0.3633 -1.0278 -0.0064 32 1 1.5101 0.9813 2.3841 33 1 0.7209 3.6029 7.7109 34 1 -0.9182 2.8855 7.7151 35 1 -0.2091 2.0430 9.7992 36 1 1.5240 2.0874 9.3329 37 1 -0.5920 0.0190 8.6591 38 1 1.1548 -0.2147 8.9708 39 1 4.0061 0.1475 1.0992 40 1 3.9379 -1.3450 2.0665 41 1 5.0413 -1.7694 -0.1040 42 1 3.4989 -2.6529 -0.0053 43 1 3.9902 0.0023 -1.4319 44 1 3.6518 -1.5714 -2.1973 45 1 2.9819 -0.6391 -4.7825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993597117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:23 Heat of formation + Delta-G solvation = 11.618125 kcal Electronic energy + Delta-G solvation = -26600.452647 eV Core-core repulsion = 22937.255584 eV Total energy + Delta-G solvation = -3663.197063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.66455 -40.92672 -39.25132 -36.86894 -36.02063 -34.33745 -33.46371 -31.34719 -29.73012 -29.42085 -27.94940 -26.95408 -26.14532 -23.88064 -22.69253 -22.37478 -21.71620 -21.21735 -20.02272 -19.44670 -18.33305 -18.06457 -17.31118 -17.02229 -16.70343 -16.23562 -15.78710 -15.59711 -15.40481 -15.09982 -15.00423 -14.73921 -14.43711 -14.30599 -14.27862 -13.76642 -13.36419 -13.28928 -13.04476 -12.83445 -12.73238 -12.52673 -12.39759 -12.34560 -12.13343 -12.01500 -11.94351 -11.86408 -11.80567 -11.71683 -11.48883 -11.16914 -10.70633 -10.53425 -10.52295 -10.25192 -9.63924 -8.65157 -7.85542 -5.31661 -0.85639 -0.04946 0.53289 1.13871 1.46105 1.49430 1.57432 1.61275 2.02795 2.52245 2.93006 3.30396 3.45117 3.50666 3.65829 3.85419 3.96071 3.99673 4.14236 4.17832 4.34503 4.38365 4.46721 4.51233 4.59886 4.72870 4.73674 4.80806 4.86135 4.87327 4.90086 5.01340 5.09034 5.10947 5.12791 5.16500 5.23111 5.29874 5.38456 5.45376 5.56532 5.71912 5.76513 6.16565 6.42496 6.55340 6.92178 7.17079 7.86190 8.38029 9.21715 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027233 B = 0.002529 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.923907 B =11070.214299 C =11353.473720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.166 3.834 3 H 0.040 0.960 4 C 0.147 3.853 5 H 0.064 0.936 6 N -0.692 5.692 7 C 0.596 3.404 8 O -0.550 6.550 9 C -0.035 4.035 10 N -0.433 5.433 11 C 0.001 3.999 12 C -0.245 4.245 13 S 0.256 5.744 14 C -0.040 4.040 15 C -0.105 4.105 16 C -0.044 4.044 17 C -0.112 4.112 18 C -0.129 4.129 19 C 0.176 3.824 20 N -0.599 5.599 21 C -0.252 4.252 22 H 0.072 0.928 23 C -0.047 4.047 24 N -0.931 5.931 25 Si 0.959 3.041 26 H -0.269 1.269 27 H -0.291 1.291 28 H -0.294 1.294 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.410 0.590 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.008 0.992 44 H 0.054 0.946 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.560 11.680 25.338 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 H 0.058 0.942 4 C 0.041 3.959 5 H 0.082 0.918 6 N -0.345 5.345 7 C 0.379 3.621 8 O -0.428 6.428 9 C -0.310 4.310 10 N -0.150 5.150 11 C -0.135 4.135 12 C -0.368 4.368 13 S 0.513 5.487 14 C -0.079 4.079 15 C -0.144 4.144 16 C -0.084 4.084 17 C -0.151 4.151 18 C -0.169 4.169 19 C 0.050 3.950 20 N -0.323 5.323 21 C -0.382 4.382 22 H 0.090 0.910 23 C -0.242 4.242 24 N -0.577 5.577 25 Si 0.788 3.212 26 H -0.194 1.194 27 H -0.218 1.218 28 H -0.221 1.221 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.247 0.753 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.026 0.974 44 H 0.073 0.927 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.262 11.046 24.429 27.147 hybrid contribution -0.266 -0.906 -0.553 1.094 sum -4.528 10.140 23.876 26.332 Atomic orbital electron populations 1.21766 0.94377 1.01254 1.01459 1.20710 0.94358 0.93679 0.85389 0.94229 1.21513 0.95433 0.95684 0.83272 0.91782 1.45649 1.69513 1.12599 1.06691 1.16968 0.77211 0.86026 0.81939 1.90818 1.50945 1.15670 1.85323 1.26736 1.12870 0.96038 0.95342 1.65652 1.11209 1.38922 0.99228 1.22469 1.04040 0.87895 0.99087 1.27553 1.06217 1.02499 1.00502 1.83310 1.59020 1.05286 1.01100 1.21026 1.03392 0.96744 0.86738 1.22392 1.04336 0.90775 0.96902 1.21127 1.03344 1.00196 0.83707 1.21720 0.94843 1.00820 0.97685 1.22027 1.00507 0.98738 0.95608 1.20645 0.83123 0.96280 0.94924 1.44261 1.03204 1.65885 1.18914 1.19455 0.95484 1.36772 0.86522 0.91038 1.25750 0.99073 1.00733 0.98685 1.70162 1.25619 1.45328 1.16640 0.85325 0.78495 0.78101 0.79244 1.19360 1.21848 1.22056 0.90823 0.92729 0.93998 0.75305 0.87961 0.87277 0.86424 0.89654 0.88611 0.90082 0.90982 0.92709 0.90698 0.93661 0.97392 0.92708 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 7.84 71.98 0.56 -4.10 16 2 C 0.17 6.43 3.03 44.97 0.14 6.57 16 3 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 4 C 0.15 5.26 1.99 45.07 0.09 5.35 16 5 H 0.06 2.70 7.58 -2.38 -0.02 2.68 16 6 N -0.69 -20.33 4.57 -445.60 -2.04 -22.36 16 7 C 0.60 20.05 7.77 86.61 0.67 20.73 16 8 O -0.55 -23.54 16.73 -4.10 -0.07 -23.61 16 9 C -0.03 -0.99 7.44 87.37 0.65 -0.34 16 10 N -0.43 -13.36 10.58 -175.38 -1.86 -15.21 16 11 C 0.00 0.02 7.62 42.29 0.32 0.34 16 12 C -0.24 -4.09 7.17 25.26 0.18 -3.91 16 13 S 0.26 4.61 22.30 -56.49 -1.26 3.35 16 14 C -0.04 -0.30 6.80 30.66 0.21 -0.09 16 15 C -0.11 -0.61 7.11 31.39 0.22 -0.38 16 16 C -0.04 -0.58 6.80 30.91 0.21 -0.37 16 17 C -0.11 -3.94 5.46 30.62 0.17 -3.77 16 18 C -0.13 -5.05 6.08 30.67 0.19 -4.86 16 19 C 0.18 8.34 5.28 86.36 0.46 8.80 16 20 N -0.60 -29.01 2.99 -675.25 -2.02 -31.03 16 21 C -0.25 -13.39 8.58 84.03 0.72 -12.67 16 22 H 0.07 3.72 6.23 -2.91 -0.02 3.70 16 23 C -0.05 -2.57 4.94 84.86 0.42 -2.15 16 24 N -0.93 -53.92 11.23 21.65 0.24 -53.68 16 25 Si 0.96 44.68 29.58 68.60 2.03 46.71 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 27 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 28 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 29 H 0.07 2.06 7.79 -2.39 -0.02 2.04 16 30 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 31 H 0.04 1.60 7.40 -2.38 -0.02 1.58 16 32 H 0.41 9.37 7.74 -92.71 -0.72 8.66 16 33 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.12 0.07 8.14 -2.38 -0.02 0.05 16 36 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.05 2.96 6.15 -2.39 -0.01 2.95 16 45 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -73.60 369.79 0.54 -73.06 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.29 Total: 13.63 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.21 Total: 9.14 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -5.67 Total: -122.28 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.07 Total: -23.61 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.26 Total: 3.35 kcal Total: -73.60 0.54 -73.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993597117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.675 kcal (2) G-P(sol) polarization free energy of solvation -73.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds