Wall clock time and date at job start Tue Mar 31 2020 19:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.58664 * 2 1 4 4 C 1.53192 * 109.58404 * 239.57225 * 2 1 3 5 5 H 1.09006 * 109.49641 * 305.52607 * 4 2 1 6 6 N 1.46496 * 109.50339 * 65.62621 * 4 2 1 7 7 C 1.34775 * 120.00550 * 205.00256 * 6 4 2 8 8 O 1.21626 * 119.99647 * 359.97438 * 7 6 4 9 9 C 1.47271 * 119.99853 * 179.97438 * 7 6 4 10 10 N 1.33559 * 123.14329 * 359.70589 * 9 7 6 11 11 C 1.28645 * 115.76652 * 179.82837 * 10 9 7 12 12 S 1.70775 * 110.55761 * 0.42373 * 11 10 9 13 13 C 1.35206 * 123.13652 * 179.97438 * 9 7 6 14 14 C 1.50696 * 125.58819 * 359.96377 * 13 9 7 15 15 C 1.53005 * 117.49776 * 188.62406 * 14 13 9 16 16 C 1.52999 * 117.50089 * 120.00290 * 14 13 9 17 17 C 1.53039 * 109.31444 * 185.58010 * 4 2 1 18 18 C 1.53044 * 109.53606 * 61.36421 * 17 4 2 19 19 C 1.53190 * 109.31270 * 298.63705 * 18 17 4 20 20 N 1.46923 * 108.77855 * 54.63526 * 19 18 17 21 21 C 1.36939 * 120.63275 * 126.41244 * 20 19 18 22 22 H 1.08000 * 119.99892 * 209.00674 * 21 20 19 23 23 C 1.38808 * 119.99934 * 29.00466 * 21 20 19 24 24 N 1.31625 * 119.99625 * 15.02910 * 23 21 20 25 25 Si 1.86798 * 120.00303 * 195.02477 * 23 21 20 26 26 H 1.48498 * 109.47101 * 90.00142 * 25 23 21 27 27 H 1.48494 * 109.47389 * 210.00489 * 25 23 21 28 28 H 1.48503 * 109.46732 * 329.99893 * 25 23 21 29 29 H 1.08995 * 109.46889 * 299.72121 * 1 2 3 30 30 H 1.09003 * 109.46868 * 59.71390 * 1 2 3 31 31 H 1.08993 * 109.47361 * 179.71824 * 1 2 3 32 32 H 0.97006 * 119.99289 * 24.99980 * 6 4 2 33 33 H 1.08000 * 124.72415 * 180.15238 * 11 10 9 34 34 H 1.08997 * 115.55347 * 334.32592 * 14 13 9 35 35 H 1.08997 * 117.50078 * 359.97438 * 15 14 13 36 36 H 1.08997 * 117.49982 * 145.02144 * 15 14 13 37 37 H 1.08995 * 117.49948 * 214.98045 * 16 14 13 38 38 H 1.09000 * 117.49681 * 359.97438 * 16 14 13 39 39 H 1.08995 * 109.45937 * 301.34519 * 17 4 2 40 40 H 1.09000 * 109.46463 * 181.38449 * 17 4 2 41 41 H 1.08999 * 109.49601 * 178.68911 * 18 17 4 42 42 H 1.09001 * 109.52814 * 58.60658 * 18 17 4 43 43 H 1.09004 * 109.58442 * 294.84696 * 19 18 17 44 44 H 1.08998 * 109.58904 * 174.42609 * 19 18 17 45 45 H 0.97010 * 119.99482 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 1 1.6029 -1.7270 -1.2891 6 7 1.6706 0.0235 -2.4436 7 6 1.5472 -0.6096 -3.6270 8 8 1.7459 -1.8073 -3.6995 9 6 1.1716 0.1489 -4.8322 10 7 0.9335 1.4631 -4.8232 11 6 0.6193 1.9823 -5.9575 12 16 0.5893 0.7866 -7.1765 13 6 1.0306 -0.4210 -6.0501 14 6 1.2296 -1.8816 -6.3632 15 6 1.2206 -2.2960 -7.8360 16 6 0.0366 -2.6507 -6.9342 17 6 3.5675 -0.8496 -1.1692 18 6 3.9568 -1.6658 0.0655 19 6 3.4650 -0.9454 1.3248 20 7 2.0226 -0.6981 1.1954 21 6 1.1537 -1.1100 2.1704 22 1 0.1359 -1.3646 1.9142 23 6 1.5812 -1.2002 3.4879 24 7 2.7046 -0.6216 3.8564 25 14 0.5622 -2.1427 4.7380 26 1 0.9961 -3.5627 4.7608 27 1 0.7532 -1.5451 6.0839 28 1 -0.8728 -2.0694 4.3631 29 1 -0.3633 0.5095 0.8924 30 1 -0.3633 0.5183 -0.8874 31 1 -0.3634 -1.0276 -0.0051 32 1 1.5124 0.9788 -2.3857 33 1 0.4002 3.0279 -6.1160 34 1 1.9006 -2.4189 -5.6930 35 1 1.0703 -1.5123 -8.5785 36 1 1.8858 -3.1060 -8.1350 37 1 -0.0771 -3.6940 -6.6399 38 1 -0.8924 -2.1003 -7.0830 39 1 4.0061 0.1458 -1.0996 40 1 3.9378 -1.3476 -2.0652 41 1 5.0411 -1.7696 0.1059 42 1 3.4987 -2.6532 0.0089 43 1 3.9904 0.0037 1.4316 44 1 3.6518 -1.5691 2.1991 45 1 3.0031 -0.6844 4.7772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993836979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:57 Heat of formation + Delta-G solvation = 53.080116 kcal Electronic energy + Delta-G solvation = -27051.849763 eV Core-core repulsion = 23390.450627 eV Total energy + Delta-G solvation = -3661.399137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.66954 -38.94833 -37.58107 -37.30386 -34.26531 -32.52759 -31.63972 -30.69939 -29.24799 -26.68615 -25.74932 -24.93868 -23.14987 -22.68439 -22.27699 -21.40218 -20.64184 -19.82751 -19.11183 -18.31890 -16.93958 -16.38541 -15.95381 -15.56008 -15.38898 -14.93904 -14.66713 -14.40686 -14.07575 -13.94263 -13.71260 -13.47678 -13.25081 -12.74534 -12.52777 -12.36443 -12.23209 -11.88408 -11.66407 -11.50540 -11.32103 -11.07138 -10.90224 -10.87638 -10.73595 -10.52678 -10.26659 -10.11669 -10.04078 -10.00215 -9.84394 -9.58438 -9.56943 -9.33606 -9.07666 -8.58931 -8.41983 -6.65148 -5.76845 -3.21244 0.28240 0.93650 1.36193 1.90036 3.37967 3.39512 3.42293 3.46827 3.48555 3.66476 3.96056 4.23985 4.50472 4.54257 4.70079 4.85855 5.00102 5.27627 5.31073 5.32900 5.42655 5.54275 5.56883 5.62399 5.72945 5.77810 5.83317 5.99642 6.02015 6.14904 6.26068 6.37761 6.46850 6.56834 6.67101 6.75762 6.79106 6.88513 7.02643 7.09675 7.19718 7.43469 7.70588 7.83347 7.84814 8.41506 8.48473 9.22771 9.85298 10.41698 11.31718 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020860 B = 0.002768 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.989477 B =10114.241904 C =10285.514507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.131 3.869 5 H 0.087 0.913 6 N -0.698 5.698 7 C 0.591 3.409 8 O -0.534 6.534 9 C 0.004 3.996 10 N -0.434 5.434 11 C -0.006 4.006 12 S 0.190 5.810 13 C -0.149 4.149 14 C -0.086 4.086 15 C -0.179 4.179 16 C -0.159 4.159 17 C -0.117 4.117 18 C -0.140 4.140 19 C 0.169 3.831 20 N -0.582 5.582 21 C -0.251 4.251 22 H 0.071 0.929 23 C 0.003 3.997 24 N -0.903 5.903 25 Si 0.903 3.097 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.405 0.595 33 H 0.205 0.795 34 H 0.150 0.850 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.019 0.981 44 H 0.090 0.910 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 3.102 -24.514 24.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.025 3.975 5 H 0.105 0.895 6 N -0.347 5.347 7 C 0.374 3.626 8 O -0.412 6.412 9 C -0.131 4.131 10 N -0.148 5.148 11 C -0.306 4.306 12 S 0.447 5.553 13 C -0.273 4.273 14 C -0.106 4.106 15 C -0.216 4.216 16 C -0.197 4.197 17 C -0.155 4.155 18 C -0.179 4.179 19 C 0.044 3.956 20 N -0.305 5.305 21 C -0.380 4.380 22 H 0.089 0.911 23 C -0.195 4.195 24 N -0.547 5.547 25 Si 0.733 3.267 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.240 0.760 33 H 0.221 0.779 34 H 0.168 0.832 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.037 0.963 44 H 0.108 0.892 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.123 2.697 -24.871 25.211 hybrid contribution -0.252 -0.168 1.511 1.541 sum -3.375 2.529 -23.360 23.738 Atomic orbital electron populations 1.21820 0.95660 1.01600 1.00345 1.20554 0.93276 0.93615 0.86552 0.95384 1.21844 0.95186 0.96864 0.83593 0.89466 1.45979 1.68306 1.12760 1.07697 1.16976 0.77481 0.86174 0.81930 1.90737 1.51717 1.13823 1.84918 1.20486 1.08295 0.89238 0.95063 1.66969 1.12279 1.09248 1.26269 1.28321 1.05799 1.05285 0.91193 1.82738 1.61186 0.97714 1.13700 1.24809 1.05031 1.00977 0.96507 1.20721 1.04160 0.88293 0.97451 1.23158 1.02352 1.03946 0.92158 1.23069 0.92654 1.01515 1.02482 1.21765 0.95293 1.00123 0.98345 1.22185 0.99205 0.99693 0.96860 1.20855 0.83050 0.97213 0.94523 1.44048 1.03181 1.65191 1.18124 1.19197 0.94836 1.37823 0.86158 0.91136 1.25073 0.97848 0.99681 0.96922 1.70030 1.23340 1.44493 1.16881 0.86283 0.79848 0.79787 0.80813 1.21438 1.21807 1.20430 0.91728 0.94240 0.92736 0.76046 0.77878 0.83243 0.88766 0.87609 0.87602 0.88672 0.92734 0.93207 0.93014 0.92510 0.96324 0.89218 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 7.83 37.16 0.29 -2.38 16 2 C 0.17 3.51 3.03 -67.60 -0.21 3.31 16 3 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 4 C 0.13 2.48 1.99 -67.81 -0.14 2.35 16 5 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 6 N -0.70 -11.54 4.58 -54.81 -0.25 -11.79 16 7 C 0.59 9.88 7.76 -12.59 -0.10 9.78 16 8 O -0.53 -10.05 13.82 5.25 0.07 -9.97 16 9 C 0.00 0.05 6.70 -84.52 -0.57 -0.52 16 10 N -0.43 -5.42 10.12 -12.36 -0.13 -5.55 16 11 C -0.01 -0.06 12.17 51.43 0.63 0.57 16 12 S 0.19 1.50 21.77 -107.50 -2.34 -0.84 16 13 C -0.15 -1.76 6.04 -35.39 -0.21 -1.98 16 14 C -0.09 -0.97 5.40 -91.77 -0.50 -1.46 16 15 C -0.18 -1.43 10.03 -26.73 -0.27 -1.70 16 16 C -0.16 -1.45 10.23 -26.73 -0.27 -1.72 16 17 C -0.12 -2.18 5.46 -26.69 -0.15 -2.33 16 18 C -0.14 -2.81 6.08 -26.61 -0.16 -2.97 16 19 C 0.17 4.06 5.29 -3.71 -0.02 4.04 16 20 N -0.58 -14.45 2.99 -164.78 -0.49 -14.94 16 21 C -0.25 -6.75 8.60 -15.06 -0.13 -6.88 16 22 H 0.07 1.87 6.21 -52.49 -0.33 1.54 16 23 C 0.00 0.09 4.96 -17.43 -0.09 0.00 16 24 N -0.90 -26.02 11.14 55.49 0.62 -25.40 16 25 Si 0.90 21.73 29.58 -169.99 -5.03 16.71 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H 0.06 1.33 7.62 -51.93 -0.40 0.93 16 30 H 0.04 0.66 7.80 -51.93 -0.41 0.26 16 31 H 0.05 1.10 7.45 -51.93 -0.39 0.72 16 32 H 0.40 6.17 8.12 -40.82 -0.33 5.84 16 33 H 0.20 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.15 2.04 6.17 -51.93 -0.32 1.72 16 35 H 0.09 0.64 7.28 -51.93 -0.38 0.26 16 36 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -31.14 370.84 -10.45 -41.59 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.61 Total: 6.49 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.88 Total: -1.88 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.25 Total: -57.67 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.34 Total: -0.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.14 -10.45 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993836979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.671 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds