Wall clock time and date at job start Tue Mar 31 2020 19:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.69877 * 2 1 4 4 C 1.53626 * 109.66400 * 120.59506 * 2 1 3 5 5 H 1.09004 * 109.42750 * 294.41656 * 4 2 1 6 6 N 1.46494 * 109.63448 * 54.55390 * 4 2 1 7 7 C 1.34772 * 120.00129 * 204.83477 * 6 4 2 8 8 O 1.21687 * 120.00139 * 359.97438 * 7 6 4 9 9 C 1.46677 * 120.00304 * 180.02562 * 7 6 4 10 10 S 1.76218 * 126.12838 * 359.68662 * 9 7 6 11 11 C 1.70954 * 90.31293 * 179.97438 * 10 9 7 12 12 N 1.29425 * 110.39170 * 0.34787 * 11 10 9 13 13 C 1.30941 * 117.36561 * 359.72466 * 12 11 10 14 14 C 1.50703 * 122.90763 * 180.02562 * 13 12 11 15 15 C 1.53002 * 117.49648 * 8.71098 * 14 13 12 16 16 C 1.53000 * 117.49662 * 300.05332 * 14 13 12 17 17 C 1.53035 * 109.23856 * 174.54926 * 4 2 1 18 18 C 1.53041 * 109.54001 * 298.50796 * 17 4 2 19 19 C 1.53193 * 109.30945 * 61.36932 * 18 17 4 20 20 N 1.46921 * 109.58308 * 239.64722 * 2 1 3 21 21 C 1.36928 * 120.63487 * 6.62583 * 20 2 1 22 22 H 1.08004 * 120.00078 * 332.30910 * 21 20 2 23 23 C 1.38816 * 120.00302 * 152.30235 * 21 20 2 24 24 N 1.31613 * 120.00013 * 334.10620 * 23 21 20 25 25 Si 1.86798 * 119.99931 * 154.09845 * 23 21 20 26 26 H 1.48501 * 109.47273 * 180.02562 * 25 23 21 27 27 H 1.48501 * 109.47362 * 300.00150 * 25 23 21 28 28 H 1.48501 * 109.47266 * 60.00252 * 25 23 21 29 29 H 1.08994 * 109.47278 * 180.35360 * 1 2 3 30 30 H 1.09006 * 109.46769 * 300.35375 * 1 2 3 31 31 H 1.08994 * 109.47175 * 60.35123 * 1 2 3 32 32 H 0.97003 * 119.99745 * 24.84287 * 6 4 2 33 33 H 1.08003 * 124.80564 * 180.02562 * 11 10 9 34 34 H 1.09001 * 115.55099 * 154.37481 * 14 13 12 35 35 H 1.09000 * 117.49907 * 359.97438 * 15 14 13 36 36 H 1.08991 * 117.50418 * 145.01878 * 15 14 13 37 37 H 1.09009 * 117.49448 * 214.97366 * 16 14 13 38 38 H 1.08993 * 117.50060 * 359.97027 * 16 14 13 39 39 H 1.09006 * 109.45942 * 178.49090 * 17 4 2 40 40 H 1.08998 * 109.45256 * 58.52608 * 17 4 2 41 41 H 1.08999 * 109.49582 * 301.41532 * 18 17 4 42 42 H 1.09001 * 109.52690 * 181.33441 * 18 17 4 43 43 H 1.09000 * 109.58243 * 185.58397 * 19 18 17 44 44 H 1.08998 * 109.70395 * 65.22183 * 19 18 17 45 45 H 0.97001 * 120.00272 * 354.50558 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0470 -0.7363 1.2453 5 1 1.7688 -0.1771 2.1387 6 7 1.4591 -2.0768 1.3040 7 6 1.3427 -2.7104 2.4878 8 8 1.7263 -2.1691 3.5079 9 6 0.7546 -4.0528 2.5465 10 16 0.1435 -4.9802 1.1784 11 6 -0.2749 -6.2658 2.2246 12 7 0.0272 -5.9685 3.4475 13 6 0.5773 -4.8003 3.6647 14 6 0.9792 -4.3271 5.0379 15 6 0.9141 -5.3413 6.1816 16 6 -0.1199 -4.2158 6.0964 17 6 3.5711 -0.8498 1.1675 18 6 3.9615 -1.6628 -0.0689 19 6 3.4656 -0.9419 -1.3264 20 7 2.0225 -0.6995 -1.1945 21 6 1.1537 -1.1126 -2.1689 22 1 0.1300 -1.3463 -1.9161 23 6 1.5886 -1.2309 -3.4819 24 7 2.6024 -0.5072 -3.9071 25 14 0.7352 -2.4174 -4.6451 26 1 1.3852 -2.3567 -5.9789 27 1 0.8379 -3.7979 -4.1074 28 1 -0.6957 -2.0415 -4.7737 29 1 -0.3633 -1.0276 0.0063 30 1 -0.3633 0.5194 0.8869 31 1 -0.3633 0.5083 -0.8931 32 1 1.1538 -2.5085 0.4907 33 1 -0.7318 -7.1926 1.9104 34 1 1.7806 -3.5889 5.0649 35 1 0.5802 -6.3506 5.9409 36 1 1.6724 -5.2701 6.9613 37 1 -0.0413 -3.4044 6.8202 38 1 -1.1337 -4.4843 5.7995 39 1 3.9443 -1.3481 2.0624 40 1 4.0063 0.1472 1.0989 41 1 3.5061 -2.6515 -0.0129 42 1 5.0460 -1.7636 -0.1112 43 1 3.6531 -1.5637 -2.2019 44 1 3.9875 0.0089 -1.4349 45 1 2.9944 0.1656 -3.3286 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993965018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:31 Heat of formation + Delta-G solvation = 54.653083 kcal Electronic energy + Delta-G solvation = -27732.664718 eV Core-core repulsion = 24071.333791 eV Total energy + Delta-G solvation = -3661.330928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54759 -39.49637 -37.64908 -36.52048 -34.23304 -32.61939 -31.94057 -30.72570 -29.20671 -26.63249 -25.95081 -24.95964 -23.18991 -22.40908 -22.28560 -21.32305 -20.97222 -19.37245 -18.92165 -18.05836 -17.12061 -16.82665 -15.96683 -15.40794 -15.26505 -14.78007 -14.55136 -14.45271 -14.31164 -14.02167 -13.66517 -13.62072 -13.27593 -13.15328 -12.71040 -12.36430 -11.92851 -11.59267 -11.56946 -11.54138 -11.30849 -11.06296 -10.86720 -10.84141 -10.68134 -10.44018 -10.29940 -10.14030 -10.12239 -10.03644 -9.84715 -9.61272 -9.58855 -9.21897 -8.85713 -8.64655 -8.41307 -6.97160 -6.13112 -3.30582 0.18378 1.13285 1.51474 2.34465 3.24990 3.39909 3.43217 3.45606 3.63782 3.88198 4.04459 4.50605 4.58466 4.81447 4.99209 5.02828 5.08313 5.12015 5.25338 5.40992 5.41847 5.50243 5.57308 5.59053 5.74084 5.77468 5.95533 5.97385 6.08035 6.09266 6.13453 6.23586 6.28535 6.34279 6.44366 6.49570 6.58031 6.74573 6.83670 6.91497 7.04112 7.15326 7.46954 7.81118 7.92829 8.38713 8.50270 9.02502 9.77255 10.21077 11.14592 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.004108 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.765198 B = 6814.200014 C = 7926.505732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.160 3.840 3 H 0.040 0.960 4 C 0.134 3.866 5 H 0.080 0.920 6 N -0.693 5.693 7 C 0.591 3.409 8 O -0.535 6.535 9 C -0.283 4.283 10 S 0.185 5.815 11 C 0.023 3.977 12 N -0.474 5.474 13 C 0.166 3.834 14 C -0.093 4.093 15 C -0.165 4.165 16 C -0.158 4.158 17 C -0.121 4.121 18 C -0.135 4.135 19 C 0.150 3.850 20 N -0.594 5.594 21 C -0.355 4.355 22 H 0.063 0.937 23 C -0.020 4.020 24 N -0.912 5.912 25 Si 1.058 2.942 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.408 0.592 33 H 0.205 0.795 34 H 0.143 0.857 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.017 0.983 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -8.465 13.329 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 H 0.058 0.942 4 C 0.028 3.972 5 H 0.098 0.902 6 N -0.344 5.344 7 C 0.376 3.624 8 O -0.415 6.415 9 C -0.407 4.407 10 S 0.441 5.559 11 C -0.272 4.272 12 N -0.188 5.188 13 C 0.028 3.972 14 C -0.113 4.113 15 C -0.202 4.202 16 C -0.196 4.196 17 C -0.160 4.160 18 C -0.174 4.174 19 C 0.024 3.976 20 N -0.318 5.318 21 C -0.484 4.484 22 H 0.080 0.920 23 C -0.222 4.222 24 N -0.552 5.552 25 Si 0.888 3.112 26 H -0.212 1.212 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.244 0.756 33 H 0.221 0.779 34 H 0.161 0.839 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.035 0.965 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.029 -8.978 11.696 15.285 hybrid contribution -0.005 0.589 1.769 1.865 sum -4.034 -8.389 13.466 16.370 Atomic orbital electron populations 1.21759 0.95359 1.01466 1.00523 1.20802 0.93622 0.93637 0.86613 0.94249 1.21657 0.92935 0.82496 1.00092 0.90194 1.45911 1.61425 1.18612 1.08441 1.16677 0.78512 0.82874 0.84331 1.90729 1.50678 1.66140 1.33958 1.25597 1.15701 1.02682 0.96738 1.84451 1.52083 1.08737 1.10654 1.28661 1.02877 1.04279 0.91363 1.65967 1.14592 1.17611 1.20628 1.19685 0.94855 0.87694 0.94985 1.20875 1.03282 1.03139 0.83997 1.22986 1.01973 0.95745 0.99541 1.22909 0.94923 1.01141 1.00610 1.21778 0.95393 1.00544 0.98285 1.22018 0.99133 0.99589 0.96680 1.20979 0.84069 0.96871 0.95646 1.44276 1.02609 1.65343 1.19618 1.19930 0.95377 1.44405 0.88648 0.91951 1.25772 1.00005 1.01052 0.95416 1.70774 1.26496 1.19940 1.37941 0.83618 0.75152 0.76033 0.76390 1.21168 1.21979 1.21976 0.92860 0.94138 0.91658 0.75552 0.77879 0.83942 0.87898 0.88577 0.88259 0.88962 0.92723 0.91715 0.92618 0.93106 0.90190 0.96496 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 7.74 37.16 0.29 -2.12 16 2 C 0.16 3.08 3.22 -67.37 -0.22 2.87 16 3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.13 2.34 2.33 -67.59 -0.16 2.18 16 5 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 6 N -0.69 -11.77 3.47 -54.78 -0.19 -11.96 16 7 C 0.59 9.99 7.75 -12.86 -0.10 9.89 16 8 O -0.54 -9.90 13.99 5.20 0.07 -9.83 16 9 C -0.28 -4.25 6.48 -37.10 -0.24 -4.49 16 10 S 0.18 2.26 22.35 -107.50 -2.40 -0.14 16 11 C 0.02 0.25 12.22 51.75 0.63 0.88 16 12 N -0.47 -6.20 9.80 -11.53 -0.11 -6.31 16 13 C 0.17 2.39 6.42 -83.89 -0.54 1.85 16 14 C -0.09 -1.25 5.44 -91.77 -0.50 -1.75 16 15 C -0.16 -1.81 10.09 -26.69 -0.27 -2.08 16 16 C -0.16 -1.79 10.24 -26.69 -0.27 -2.07 16 17 C -0.12 -2.07 5.57 -26.69 -0.15 -2.22 16 18 C -0.13 -2.47 5.93 -26.61 -0.16 -2.63 16 19 C 0.15 3.26 4.71 -3.71 -0.02 3.24 16 20 N -0.59 -13.21 2.50 -164.52 -0.41 -13.63 16 21 C -0.35 -8.77 8.52 -15.06 -0.13 -8.90 16 22 H 0.06 1.53 6.24 -52.48 -0.33 1.20 16 23 C -0.02 -0.51 4.66 -17.43 -0.08 -0.59 16 24 N -0.91 -25.73 12.42 55.49 0.69 -25.05 16 25 Si 1.06 23.56 29.99 -169.99 -5.10 18.47 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.05 0.96 6.43 -51.93 -0.33 0.63 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.27 7.60 -51.93 -0.39 0.88 16 32 H 0.41 7.18 6.97 -40.82 -0.28 6.90 16 33 H 0.20 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.14 2.13 6.17 -51.93 -0.32 1.81 16 35 H 0.10 1.15 7.74 -51.93 -0.40 0.75 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.06 7.53 -51.93 -0.39 0.67 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.97 6.31 -51.93 -0.33 1.64 16 44 H 0.02 0.38 7.88 -51.93 -0.41 -0.03 16 45 H 0.27 7.70 6.77 -40.82 -0.28 7.42 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -28.87 367.56 -10.28 -39.15 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.46 Total: 9.69 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -1.91 Total: -5.94 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.03 Total: -56.94 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.10 Total: 18.47 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.40 Total: -0.14 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.87 -10.28 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993965018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.803 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds