Wall clock time and date at job start Tue Mar 31 2020 19:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.69877 * 2 1 4 4 C 1.53626 * 109.66400 * 120.59506 * 2 1 3 5 5 H 1.09004 * 109.42750 * 294.41656 * 4 2 1 6 6 N 1.46494 * 109.63448 * 54.55390 * 4 2 1 7 7 C 1.34772 * 120.00129 * 204.83477 * 6 4 2 8 8 O 1.21687 * 120.00139 * 359.97438 * 7 6 4 9 9 C 1.46677 * 120.00304 * 180.02562 * 7 6 4 10 10 S 1.76218 * 126.12838 * 359.68662 * 9 7 6 11 11 C 1.70954 * 90.31293 * 179.97438 * 10 9 7 12 12 N 1.29425 * 110.39170 * 0.34787 * 11 10 9 13 13 C 1.30941 * 117.36561 * 359.72466 * 12 11 10 14 14 C 1.50703 * 122.90763 * 180.02562 * 13 12 11 15 15 C 1.53002 * 117.49648 * 8.71098 * 14 13 12 16 16 C 1.53000 * 117.49662 * 300.05332 * 14 13 12 17 17 C 1.53035 * 109.23856 * 174.54926 * 4 2 1 18 18 C 1.53041 * 109.54001 * 298.50796 * 17 4 2 19 19 C 1.53193 * 109.30945 * 61.36932 * 18 17 4 20 20 N 1.46921 * 109.58308 * 239.64722 * 2 1 3 21 21 C 1.36928 * 120.63487 * 6.62583 * 20 2 1 22 22 H 1.08004 * 120.00078 * 332.30910 * 21 20 2 23 23 C 1.38816 * 120.00302 * 152.30235 * 21 20 2 24 24 N 1.31613 * 120.00013 * 334.10620 * 23 21 20 25 25 Si 1.86798 * 119.99931 * 154.09845 * 23 21 20 26 26 H 1.48501 * 109.47273 * 180.02562 * 25 23 21 27 27 H 1.48501 * 109.47362 * 300.00150 * 25 23 21 28 28 H 1.48501 * 109.47266 * 60.00252 * 25 23 21 29 29 H 1.08994 * 109.47278 * 180.35360 * 1 2 3 30 30 H 1.09006 * 109.46769 * 300.35375 * 1 2 3 31 31 H 1.08994 * 109.47175 * 60.35123 * 1 2 3 32 32 H 0.97003 * 119.99745 * 24.84287 * 6 4 2 33 33 H 1.08003 * 124.80564 * 180.02562 * 11 10 9 34 34 H 1.09001 * 115.55099 * 154.37481 * 14 13 12 35 35 H 1.09000 * 117.49907 * 359.97438 * 15 14 13 36 36 H 1.08991 * 117.50418 * 145.01878 * 15 14 13 37 37 H 1.09009 * 117.49448 * 214.97366 * 16 14 13 38 38 H 1.08993 * 117.50060 * 359.97027 * 16 14 13 39 39 H 1.09006 * 109.45942 * 178.49090 * 17 4 2 40 40 H 1.08998 * 109.45256 * 58.52608 * 17 4 2 41 41 H 1.08999 * 109.49582 * 301.41532 * 18 17 4 42 42 H 1.09001 * 109.52690 * 181.33441 * 18 17 4 43 43 H 1.09000 * 109.58243 * 185.58397 * 19 18 17 44 44 H 1.08998 * 109.70395 * 65.22183 * 19 18 17 45 45 H 0.97001 * 120.00272 * 354.50558 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0470 -0.7363 1.2453 5 1 1.7688 -0.1771 2.1387 6 7 1.4591 -2.0768 1.3040 7 6 1.3427 -2.7104 2.4878 8 8 1.7263 -2.1691 3.5079 9 6 0.7546 -4.0528 2.5465 10 16 0.1435 -4.9802 1.1784 11 6 -0.2749 -6.2658 2.2246 12 7 0.0272 -5.9685 3.4475 13 6 0.5773 -4.8003 3.6647 14 6 0.9792 -4.3271 5.0379 15 6 0.9141 -5.3413 6.1816 16 6 -0.1199 -4.2158 6.0964 17 6 3.5711 -0.8498 1.1675 18 6 3.9615 -1.6628 -0.0689 19 6 3.4656 -0.9419 -1.3264 20 7 2.0225 -0.6995 -1.1945 21 6 1.1537 -1.1126 -2.1689 22 1 0.1300 -1.3463 -1.9161 23 6 1.5886 -1.2309 -3.4819 24 7 2.6024 -0.5072 -3.9071 25 14 0.7352 -2.4174 -4.6451 26 1 1.3852 -2.3567 -5.9789 27 1 0.8379 -3.7979 -4.1074 28 1 -0.6957 -2.0415 -4.7737 29 1 -0.3633 -1.0276 0.0063 30 1 -0.3633 0.5194 0.8869 31 1 -0.3633 0.5083 -0.8931 32 1 1.1538 -2.5085 0.4907 33 1 -0.7318 -7.1926 1.9104 34 1 1.7806 -3.5889 5.0649 35 1 0.5802 -6.3506 5.9409 36 1 1.6724 -5.2701 6.9613 37 1 -0.0413 -3.4044 6.8202 38 1 -1.1337 -4.4843 5.7995 39 1 3.9443 -1.3481 2.0624 40 1 4.0063 0.1472 1.0989 41 1 3.5061 -2.6515 -0.0129 42 1 5.0460 -1.7636 -0.1112 43 1 3.6531 -1.5637 -2.2019 44 1 3.9875 0.0089 -1.4349 45 1 2.9944 0.1656 -3.3286 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993965018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:30 Heat of formation + Delta-G solvation = 39.057227 kcal Electronic energy + Delta-G solvation = -27733.341005 eV Core-core repulsion = 24071.333791 eV Total energy + Delta-G solvation = -3662.007215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.66583 -40.79045 -39.13171 -37.44248 -35.87194 -34.17032 -33.54029 -31.96505 -30.74710 -28.08346 -27.13469 -26.70867 -24.32266 -23.64149 -23.24754 -22.75796 -22.53172 -20.54902 -20.45067 -19.12740 -18.84853 -17.97650 -17.20824 -16.66036 -16.55081 -16.16775 -16.02772 -15.60455 -15.50527 -15.39455 -15.28140 -14.91112 -14.67998 -14.60694 -14.28057 -13.51269 -13.33952 -13.23694 -12.81557 -12.74631 -12.63221 -12.50128 -12.40595 -12.26171 -11.91825 -11.85959 -11.78015 -11.73763 -11.53606 -11.42593 -11.12161 -10.98733 -10.70716 -10.64650 -10.38874 -10.06754 -9.73546 -8.86613 -8.14183 -5.29504 -0.80929 0.16535 0.56122 1.33450 1.63735 1.69709 1.87079 2.03511 2.11684 2.70580 2.96461 3.13469 3.28809 3.46187 3.60390 3.78994 3.93130 3.95256 3.98899 4.06944 4.11764 4.22617 4.24620 4.43135 4.46065 4.54264 4.59740 4.74281 4.83105 4.84375 4.85788 4.89049 4.99927 5.04252 5.07169 5.20877 5.21374 5.28230 5.30302 5.35232 5.38272 5.55718 5.97887 6.41556 6.48014 6.55313 7.07152 7.11448 7.85803 8.30265 9.11281 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.004108 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.765198 B = 6814.200014 C = 7926.505732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.157 3.843 3 H 0.036 0.964 4 C 0.143 3.857 5 H 0.086 0.914 6 N -0.694 5.694 7 C 0.593 3.407 8 O -0.557 6.557 9 C -0.321 4.321 10 S 0.189 5.811 11 C 0.052 3.948 12 N -0.492 5.492 13 C 0.170 3.830 14 C -0.120 4.120 15 C -0.147 4.147 16 C -0.150 4.150 17 C -0.115 4.115 18 C -0.122 4.122 19 C 0.158 3.842 20 N -0.604 5.604 21 C -0.341 4.341 22 H 0.067 0.933 23 C -0.073 4.073 24 N -0.947 5.947 25 Si 1.102 2.898 26 H -0.302 1.302 27 H -0.275 1.275 28 H -0.278 1.278 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.404 0.596 33 H 0.249 0.751 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.004 0.996 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.400 -10.406 14.833 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 H 0.054 0.946 4 C 0.037 3.963 5 H 0.104 0.896 6 N -0.344 5.344 7 C 0.380 3.620 8 O -0.438 6.438 9 C -0.445 4.445 10 S 0.446 5.554 11 C -0.243 4.243 12 N -0.206 5.206 13 C 0.032 3.968 14 C -0.141 4.141 15 C -0.184 4.184 16 C -0.188 4.188 17 C -0.154 4.154 18 C -0.161 4.161 19 C 0.032 3.968 20 N -0.329 5.329 21 C -0.470 4.470 22 H 0.084 0.916 23 C -0.270 4.270 24 N -0.589 5.589 25 Si 0.928 3.072 26 H -0.229 1.229 27 H -0.201 1.201 28 H -0.204 1.204 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.241 0.759 33 H 0.265 0.735 34 H 0.141 0.859 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.022 0.978 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.365 -10.922 13.235 17.979 hybrid contribution 0.363 1.161 1.381 1.840 sum -5.002 -9.762 14.616 18.274 Atomic orbital electron populations 1.21669 0.94331 1.01458 1.00802 1.20938 0.94504 0.93390 0.86081 0.94627 1.21474 0.93056 0.82836 0.98977 0.89633 1.45857 1.61686 1.18347 1.08490 1.16879 0.77961 0.83494 0.83699 1.90710 1.51668 1.67014 1.34457 1.25411 1.18238 1.02532 0.98300 1.84417 1.52049 1.08977 1.09982 1.29458 1.00049 1.04672 0.90135 1.66045 1.15778 1.17135 1.21619 1.19898 0.93882 0.87907 0.95159 1.20852 1.04098 1.04421 0.84722 1.23040 1.01856 0.95198 0.98330 1.22970 0.94466 1.01720 0.99604 1.21729 0.95254 1.00804 0.97575 1.21857 0.99986 0.98860 0.95400 1.20800 0.84019 0.95932 0.96015 1.44436 1.02578 1.65939 1.19941 1.20165 0.95732 1.42242 0.88870 0.91550 1.26919 1.00447 1.02214 0.97401 1.70892 1.28614 1.21385 1.38048 0.83019 0.74857 0.75290 0.74018 1.22879 1.20065 1.20354 0.92982 0.91676 0.93478 0.75923 0.73520 0.85873 0.87902 0.86862 0.87091 0.89065 0.92233 0.90866 0.93192 0.91463 0.93404 0.97805 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 7.74 71.98 0.56 -3.84 16 2 C 0.16 5.98 3.22 45.12 0.15 6.12 16 3 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 4 C 0.14 4.85 2.33 45.21 0.11 4.96 16 5 H 0.09 2.86 7.58 -2.38 -0.02 2.84 16 6 N -0.69 -23.05 3.47 -445.46 -1.55 -24.60 16 7 C 0.59 19.71 7.75 86.45 0.67 20.38 16 8 O -0.56 -20.46 13.99 -4.31 -0.06 -20.52 16 9 C -0.32 -9.32 6.48 23.88 0.15 -9.17 16 10 S 0.19 4.27 22.35 -56.49 -1.26 3.00 16 11 C 0.05 0.93 12.22 130.60 1.60 2.52 16 12 N -0.49 -11.67 9.80 -190.40 -1.87 -13.53 16 13 C 0.17 4.68 6.42 42.10 0.27 4.95 16 14 C -0.12 -3.13 5.44 -11.54 -0.06 -3.19 16 15 C -0.15 -2.93 10.09 30.62 0.31 -2.62 16 16 C -0.15 -3.15 10.24 30.62 0.31 -2.84 16 17 C -0.12 -3.82 5.57 30.62 0.17 -3.65 16 18 C -0.12 -4.42 5.93 30.67 0.18 -4.24 16 19 C 0.16 7.01 4.71 86.36 0.41 7.42 16 20 N -0.60 -27.08 2.50 -674.41 -1.69 -28.77 16 21 C -0.34 -16.88 8.52 84.04 0.72 -16.17 16 22 H 0.07 3.21 6.24 -2.91 -0.02 3.19 16 23 C -0.07 -3.87 4.66 84.86 0.40 -3.47 16 24 N -0.95 -55.02 12.42 21.65 0.27 -54.75 16 25 Si 1.10 47.63 29.99 68.60 2.06 49.69 16 26 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 29 H 0.05 1.83 6.43 -2.39 -0.02 1.81 16 30 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.05 1.81 7.60 -2.39 -0.02 1.79 16 32 H 0.40 13.99 6.97 -92.71 -0.65 13.34 16 33 H 0.25 2.02 8.06 -2.91 -0.02 1.99 16 34 H 0.12 3.69 6.17 -2.39 -0.01 3.68 16 35 H 0.10 2.07 7.74 -2.39 -0.02 2.05 16 36 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.05 1.87 7.53 -2.39 -0.02 1.85 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.05 2.43 6.31 -2.39 -0.02 2.42 16 44 H 0.00 0.18 7.88 -2.39 -0.02 0.16 16 45 H 0.25 15.08 6.77 -92.71 -0.63 14.46 16 Total: -1.00 -63.41 367.56 2.35 -61.06 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.51 Total: 31.26 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.93 Total: -2.84 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -4.83 Total: -121.65 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.06 Total: -20.52 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.06 Total: 49.69 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.26 Total: 3.00 kcal Total: -63.41 2.35 -61.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993965018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.119 kcal (2) G-P(sol) polarization free energy of solvation -63.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds